IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2641	 64.61	0	2888350..2889957	+	535	75676840	-	Nwi_2656	-	putative monovalent cation/H+ antiporter subunit D
2642	 61.96	0	2889954..2890442	+	162	75676841	-	Nwi_2657	-	putative monovalent cation/H+ antiporter subunit E
2643	 63.44	0	2890439..2890717	+	92	75676842	phaF	Nwi_2658	-	putative monovalent cation/H+ antiporter subunit F
2644	 60.83	0	2890714..2891073	+	119	75676843	-	Nwi_2659	-	putative monovalent cation/H+ antiporter subunit G
2645	 61.98	0	2891179..2891583	-	134	75676844	-	Nwi_2660	-	hypothetical protein
2646	 62.69	0	2891617..2893728	-	703	75676845	-	Nwi_2661	-	multicopper oxidase
2647	 63.07	0	2894397..2895257	-	286	75676846	-	Nwi_2662	-	short-chain dehydrogenase/reductase SDR
2648	 62.73	0	2895706..2896314	+	202	75676847	-	Nwi_2663	-	isochorismatase hydrolase
2649	 56.22	-1	2896380..2896877	+	165	75676848	-	Nwi_2664	-	hypothetical protein
2650	 61.88	0	2897131..2898111	-	326	75676849	-	Nwi_2665	-	helix-turn-helix, Fis-type
2651	 65.07	0	2898108..2898482	-	124	75676850	-	Nwi_2666	-	transposase IS3/IS911
2652	 54.12	-2	2899244..2899522	-	92	75676851	-	Nwi_2667	-	hypothetical protein
2653	 61.71	0	2899607..2900695	-	362	75676852	-	Nwi_2668	-	hypothetical protein
2654	 64.11	0	2900685..2903147	-	820	75676853	-	Nwi_2669	-	hypothetical protein
2655	 63.29	0	2903144..2903854	-	236	75676854	-	Nwi_2670	-	ABC transporter, ATPase subunit
2656	 58.56	-1	2904115..2904657	-	180	75676855	-	Nwi_2671	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2657	 59.23	0	2904779..2905114	+	111	75676856	-	Nwi_2672	-	hypothetical protein
2658	 65.07	0	2905644..2906018	+	124	75676857	-	Nwi_2673	-	transposase IS3/IS911
2659	 61.98	0	2906015..2906995	+	326	75676858	-	Nwi_2674	-	helix-turn-helix, Fis-type
2660	 59.62	0	2907069..2908019	+	316	75676859	-	Nwi_2675	-	glutathione S-transferase
2661	 66.21	+1	2908173..2908826	-	217	75676860	-	Nwi_2676	-	hypothetical protein
2662	 62.78	0	2909167..2909475	-	102	75676861	-	Nwi_2677	-	hypothetical protein
2663	 56.61	-1	2909616..2909804	-	62	75676862	-	Nwi_2678	-	hypothetical protein
2664	 62.81	0	2909931..2910527	-	198	75676863	-	Nwi_2679	-	hypothetical protein
2665	 66.29	+1	2910790..2911851	+	353	75676864	-	Nwi_2680	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
2666	 64.11	0	2912042..2913922	+	626	75676865	-	Nwi_2681	-	cyclic beta-1,2-glucan ABC transporter
2667	 64.55	0	2914163..2915530	+	455	75676866	-	Nwi_2682	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
2668	 53.69	-2	2916104..2916550	-	148	75676867	-	Nwi_2683	-	universal stress protein UspA
2669	 60.56	0	2916966..2918669	+	567	75676868	-	Nwi_2684	-	acyl-CoA synthetase
2670	 62.44	0	2918704..2919318	+	204	75676869	-	Nwi_2685	-	hypothetical protein
2671	 59.26	0	2919452..2919937	+	161	75676870	-	Nwi_2686	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2672	 64.09	0	2920007..2920471	-	154	75676871	-	Nwi_2687	-	ribonuclease H
2673	 63.30	0	2920468..2921448	-	326	75676872	-	Nwi_2688	-	homoserine kinase
2674	 62.22	0	2921580..2922569	-	329	75676873	-	Nwi_2689	-	LytB protein
2675	 62.96	0	2922773..2923474	+	233	75676874	-	Nwi_2690	-	hypothetical protein
2676	 62.75	0	2923614..2923970	-	118	75676875	-	Nwi_2691	-	hypothetical protein
2677	 61.97	0	2924268..2925353	-	361	75676876	-	Nwi_2692	-	fructose-1,6-bisphosphate aldolase
2678	 57.85	-1	2925475..2926347	-	290	75676877	-	Nwi_2693	-	phosphoribulokinase/uridine kinase
2679	 60.98	0	2926360..2927397	-	345	75676878	-	Nwi_2694	-	fructose-1,6-bisphosphatase
2680	 59.42	0	2927526..2928464	+	312	75676879	-	Nwi_2695	-	LysR family transcriptional regulator
2681	 70.92	+2	2928685..2929671	+	328	75676880	-	Nwi_2696	-	Sua5/YciO/YrdC/YwlC
2682	 65.14	0	2929671..2931113	+	480	75676881	-	Nwi_2697	-	FAD linked oxidase
2683	 64.19	0	2931176..2931943	-	255	75676882	-	Nwi_2698	-	hypothetical protein
2684	 61.79	0	2932007..2932519	+	170	75676883	-	Nwi_2699	-	hypothetical protein
2685	 68.82	+1	2932519..2932935	+	138	75676884	-	Nwi_2700	-	NUDIX hydrolase
2686	 61.99	0	2932907..2933398	+	163	75676885	-	Nwi_2701	-	hypothetical protein
2687	 62.55	0	2933590..2933856	+	88	75676886	-	Nwi_2702	-	hypothetical protein
2688	 64.41	0	2934012..2935340	-	442	75676887	-	Nwi_2703	-	dihydroorotase
2689	 67.57	+1	2935514..2936395	+	293	75676888	-	Nwi_2704	-	glycine cleavage T protein (aminomethyl transferase)
2690	 61.88	0	2936392..2937018	+	208	75676889	-	Nwi_2705	-	DNA-3-methyladenine glycosylase I
2691	 66.01	0	2937015..2937626	+	203	75676890	-	Nwi_2706	-	metal dependent phosphohydrolase
2692	 66.16	+1	2937705..2938301	-	198	75676891	-	Nwi_2707	-	hypothetical protein
2693	 65.87	0	2938598..2939980	-	460	75676892	-	Nwi_2708	-	cell wall hydrolase, SleB
2694	 61.48	0	2940410..2943496	-	1028	75676893	-	Nwi_2709	-	pyruvate phosphate dikinase
2695	 63.81	0	2943582..2945504	-	640	75676894	-	Nwi_2710	-	peptidase M41, FtsH
2696	 65.68	0	2945691..2946806	-	371	75676895	-	Nwi_2711	-	tRNA(Ile)-lysidine synthase
2697	 61.84	0	2946793..2947020	-	75	75676896	-	Nwi_2712	-	hypothetical protein
2698	 65.47	0	2947158..2948075	-	305	75676897	-	Nwi_2713	-	TPR repeat-containing protein
2699	 63.69	0	2948445..2948948	-	167	75676898	-	Nwi_2714	-	OmpA/MotB
2700	 58.50	-1	2949175..2949921	-	248	75676899	-	Nwi_2715	-	hypothetical protein
2701	 61.87	0	2950321..2952657	-	778	75676900	-	Nwi_2716	-	diguanylate cyclase/phophodiesterase
2702	 62.31	0	2953068..2954420	-	450	75676901	tolB	Nwi_2717	-	translocation protein TolB
2703	 62.20	0	2954463..2955515	-	350	75676902	-	Nwi_2718	-	hypothetical protein
2704	 62.72	0	2955518..2955973	-	151	75676903	-	Nwi_2719	-	biopolymer transport protein ExbD/TolR
2705	 62.46	0	2956005..2956718	-	237	75676904	-	Nwi_2720	-	MotA/TolQ/ExbB proton channel
2706	 58.08	-1	2957140..2957628	-	162	75676905	-	Nwi_2721	-	hypothetical protein
2707	 68.21	+1	2957895..2958608	-	237	75676906	-	Nwi_2722	-	TetR family transcriptional regulator
2708	 62.34	0	2958773..2959234	-	153	75676907	-	Nwi_2723	-	4-hydroxybenzoyl-CoA thioesterase
2709	 68.29	+1	2959231..2960277	-	348	75676908	ruvB	Nwi_2724	-	Holliday junction DNA helicase B
2710	 66.67	+1	2960274..2960891	-	205	75676909	ruvA	Nwi_2725	-	Holliday junction DNA helicase motor protein
2711	 66.28	+1	2960917..2961435	-	172	75676910	ruvC	Nwi_2726	-	Holliday junction resolvase
2712	 64.20	0	2961764..2962372	+	202	75676911	-	Nwi_2727	-	hypothetical protein
2713	 66.16	+1	2962436..2963806	-	456	75676912	-	Nwi_2728	-	divalent cation transporter
2714	 61.98	0	2964112..2964858	-	248	75676913	-	Nwi_2729	-	hypothetical protein
2715	 64.60	0	2965032..2965853	-	273	75676914	-	Nwi_2730	-	hypothetical protein
2716	 65.82	0	2965857..2966444	-	195	75676915	-	Nwi_2731	-	5-formyltetrahydrofolate cyclo-ligase
2717	 66.41	+1	2966934..2967317	-	127	75676916	-	Nwi_2732	-	hypothetical protein
2718	 68.45	+1	2967314..2967649	-	111	75676917	-	Nwi_2733	-	hypothetical protein
2719	 64.30	0	2967933..2969918	+	661	75676918	-	Nwi_2734	-	transketolase
2720	 61.21	0	2970244..2971251	+	335	75676919	-	Nwi_2735	-	glyceraldehyde-3-phosphate dehydrogenase
2721	 66.42	+1	2971394..2972590	+	398	75676920	pgk	Nwi_2736	-	phosphoglycerate kinase
2722	 65.21	0	2972714..2973745	+	343	75676921	-	Nwi_2737	-	fructose-bisphosphate aldolase, class-I
2723	 68.66	+1	2973912..2974613	+	233	75676922	-	Nwi_2738	-	thiamine monophosphate synthase
2724	 65.71	0	2974610..2975650	+	346	75676923	-	Nwi_2739	-	Sel1 repeat-containing protein
2725	 64.27	0	2975712..2976503	+	263	75676924	-	Nwi_2740	-	inositol monophosphatase
2726	 63.76	0	2976673..2979834	-	1053	75676925	-	Nwi_2741	-	hydrophobe/amphiphile efflux-1 HAE1
2727	 64.34	0	2979841..2981046	-	401	75676926	-	Nwi_2742	-	secretion protein HlyD
2728	 62.58	0	2981511..2982587	+	358	75676927	-	Nwi_2743	-	hypothetical protein
2729	 64.04	0	2982598..2983626	+	342	75676928	-	Nwi_2744	-	hypothetical protein
2730	 64.22	0	2983846..2984295	+	149	75676929	-	Nwi_2745	-	GCN5-related N-acetyltransferase
2731	 67.78	+1	2984357..2986240	-	627	75676930	-	Nwi_2746	-	ABC transporter, ATP-binding/permease protein
2732	 57.89	-1	2986389..2986616	+	75	75676931	rpmE	Nwi_2747	-	50S ribosomal protein L31
2733	 62.84	0	2986724..2987272	-	182	75676932	-	Nwi_2748	-	hypothetical protein
2734	 58.20	-1	2987862..2988050	-	62	75676933	-	Nwi_2749	-	hypothetical protein
2735	 65.67	0	2988257..2989255	+	332	75676934	-	Nwi_2750	-	zinc-containing alcohol dehydrogenase superfamily protein
2736	 64.62	0	2989347..2992229	+	960	75676935	-	Nwi_2751	-	multi-sensor diguanylate cyclase/phophodiesterase
2737	 58.26	-1	2992273..2992938	-	221	75676936	-	Nwi_2752	-	hypothetical protein
2738	 65.72	0	2993099..2993941	+	280	75676937	-	Nwi_2753	-	hypothetical protein
2739	 63.92	0	2994159..2995541	+	460	75676938	-	Nwi_2754	-	polysaccharide biosynthesis protein
2740	 63.62	0	2995670..2996458	-	262	75676939	-	Nwi_2755	-	3-hydroxybutyrate dehydrogenase
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.