IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2601	 61.82	0	2844592..2846655	-	687	75676800	-	Nwi_2616	-	cytochrome c1
2602	 66.10	+1	2846707..2847234	-	175	75676801	-	Nwi_2617	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
2603	 64.97	0	2847437..2847907	+	156	75676802	-	Nwi_2618	-	tRNA/rRNA methyltransferase (SpoU)
2604	 66.19	+1	2847904..2848536	+	210	75676803	-	Nwi_2619	-	hypothetical protein
2605	 65.32	0	2848619..2848990	+	123	75676804	-	Nwi_2620	-	6-pyruvoyl tetrahydropterin synthase
2606	 64.78	0	2849027..2849929	+	300	75676805	-	Nwi_2621	-	coproporphyrinogen III oxidase
2607	 69.21	+1	2849949..2851205	-	418	75676806	-	Nwi_2622	-	polynucleotide adenylyltransferase region
2608	 57.95	-1	2851202..2851465	-	87	75676807	-	Nwi_2623	-	hypothetical protein
2609	 63.66	0	2851462..2852127	-	221	75676808	-	Nwi_2624	-	NUDIX hydrolase
2610	 63.04	0	2852136..2852741	-	201	75676809	-	Nwi_2625	-	hypothetical protein
2611	 65.98	0	2852988..2854001	+	337	75676810	-	Nwi_2626	-	ATPase
2612	 68.47	+1	2854001..2854942	+	313	75676811	-	Nwi_2627	-	hypothetical protein
2613	 69.58	+1	2854939..2857752	+	937	75676812	-	Nwi_2628	-	double-transmembrane region
2614	 67.30	+1	2857762..2859825	+	687	75676813	-	Nwi_2629	-	hypothetical protein
2615	 66.67	+1	2859996..2860421	+	141	75676814	-	Nwi_2630	-	hypothetical protein
2616	 65.50	0	2860548..2862947	+	799	75676815	-	Nwi_2631	-	TonB-dependent receptor
2617	 65.38	0	2863133..2863678	-	181	75676816	-	Nwi_2632	-	GCN5-related N-acetyltransferase
2618	 63.60	0	2863740..2864228	-	162	75676817	-	Nwi_2633	-	NUDIX hydrolase
2619	 63.47	0	2864455..2865360	+	301	75676818	-	Nwi_2634	-	metallophosphoesterase
2620	 55.65	-1	2865474..2865827	-	117	75676819	-	Nwi_2635	-	hypothetical protein
2621	 70.08	+2	2866268..2866765	+	165	75676820	-	Nwi_2636	-	hypothetical protein
2622	 65.19	0	2866750..2867019	+	89	75676821	-	Nwi_2637	-	hypothetical protein
2623	 58.33	-1	2867160..2867447	-	95	75676822	-	Nwi_2638	-	hypothetical protein
2624	 56.81	-1	2867444..2867920	-	158	75676823	-	Nwi_2639	-	glutathione peroxidase
2625	 58.91	0	2867970..2868227	-	85	75676824	-	Nwi_2640	-	hypothetical protein
2626	 62.32	0	2868473..2871370	+	965	75676825	-	Nwi_2641	-	bifunctional transaldolase/phosoglucose isomerase
2627	 63.42	0	2871632..2872648	+	338	75676826	-	Nwi_2642	-	6-phosphogluconate dehydrogenase-like protein
2628	 62.24	0	2872645..2874159	+	504	75676827	-	Nwi_2643	-	glucose-6-phosphate 1-dehydrogenase
2629	 63.36	0	2874141..2874896	+	251	75676828	-	Nwi_2644	-	6-phosphogluconolactonase
2630	 63.39	0	2874893..2875411	+	172	75676829	-	Nwi_2645	-	carbohydrate kinase, thermoresistant glucokinase
2631	 62.65	0	2875634..2877523	-	629	75676830	-	Nwi_2646	-	glycoside hydrolase 15-related protein
2632	 59.08	0	2877682..2879658	-	658	75676831	-	Nwi_2647	-	PAS sensor diguanylate cyclase/phophodiesterase
2633	 58.64	-1	2880044..2881015	-	323	75676832	-	Nwi_2648	-	multicopper oxidase
2634	 59.94	0	2881041..2881397	-	118	75676833	-	Nwi_2649	-	cytochrome c, class IC
2635	 62.39	0	2881397..2882074	-	225	75676834	-	Nwi_2650	-	cytochrome c, class I
2636	 59.42	0	2882098..2883174	-	358	75676835	-	Nwi_2651	-	multicopper oxidase3
2637	 61.44	0	2883484..2884134	-	216	75676836	-	Nwi_2652	-	cytochrome c biogenesis factor
2638	 59.44	0	2884371..2884799	-	142	75676837	-	Nwi_2653	-	hypothetical protein
2639	 63.57	0	2885067..2888009	+	980	75676838	-	Nwi_2654	-	putative monovalent cation/H+ antiporter subunit A
2640	 63.42	0	2888009..2888347	+	112	75676839	-	Nwi_2655	-	putative monovalent cation/H+ antiporter subunit C
2641	 64.61	0	2888350..2889957	+	535	75676840	-	Nwi_2656	-	putative monovalent cation/H+ antiporter subunit D
2642	 61.96	0	2889954..2890442	+	162	75676841	-	Nwi_2657	-	putative monovalent cation/H+ antiporter subunit E
2643	 63.44	0	2890439..2890717	+	92	75676842	phaF	Nwi_2658	-	putative monovalent cation/H+ antiporter subunit F
2644	 60.83	0	2890714..2891073	+	119	75676843	-	Nwi_2659	-	putative monovalent cation/H+ antiporter subunit G
2645	 61.98	0	2891179..2891583	-	134	75676844	-	Nwi_2660	-	hypothetical protein
2646	 62.69	0	2891617..2893728	-	703	75676845	-	Nwi_2661	-	multicopper oxidase
2647	 63.07	0	2894397..2895257	-	286	75676846	-	Nwi_2662	-	short-chain dehydrogenase/reductase SDR
2648	 62.73	0	2895706..2896314	+	202	75676847	-	Nwi_2663	-	isochorismatase hydrolase
2649	 56.22	-1	2896380..2896877	+	165	75676848	-	Nwi_2664	-	hypothetical protein
2650	 61.88	0	2897131..2898111	-	326	75676849	-	Nwi_2665	-	helix-turn-helix, Fis-type
2651	 65.07	0	2898108..2898482	-	124	75676850	-	Nwi_2666	-	transposase IS3/IS911
2652	 54.12	-2	2899244..2899522	-	92	75676851	-	Nwi_2667	-	hypothetical protein
2653	 61.71	0	2899607..2900695	-	362	75676852	-	Nwi_2668	-	hypothetical protein
2654	 64.11	0	2900685..2903147	-	820	75676853	-	Nwi_2669	-	hypothetical protein
2655	 63.29	0	2903144..2903854	-	236	75676854	-	Nwi_2670	-	ABC transporter, ATPase subunit
2656	 58.56	-1	2904115..2904657	-	180	75676855	-	Nwi_2671	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2657	 59.23	0	2904779..2905114	+	111	75676856	-	Nwi_2672	-	hypothetical protein
2658	 65.07	0	2905644..2906018	+	124	75676857	-	Nwi_2673	-	transposase IS3/IS911
2659	 61.98	0	2906015..2906995	+	326	75676858	-	Nwi_2674	-	helix-turn-helix, Fis-type
2660	 59.62	0	2907069..2908019	+	316	75676859	-	Nwi_2675	-	glutathione S-transferase
2661	 66.21	+1	2908173..2908826	-	217	75676860	-	Nwi_2676	-	hypothetical protein
2662	 62.78	0	2909167..2909475	-	102	75676861	-	Nwi_2677	-	hypothetical protein
2663	 56.61	-1	2909616..2909804	-	62	75676862	-	Nwi_2678	-	hypothetical protein
2664	 62.81	0	2909931..2910527	-	198	75676863	-	Nwi_2679	-	hypothetical protein
2665	 66.29	+1	2910790..2911851	+	353	75676864	-	Nwi_2680	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
2666	 64.11	0	2912042..2913922	+	626	75676865	-	Nwi_2681	-	cyclic beta-1,2-glucan ABC transporter
2667	 64.55	0	2914163..2915530	+	455	75676866	-	Nwi_2682	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
2668	 53.69	-2	2916104..2916550	-	148	75676867	-	Nwi_2683	-	universal stress protein UspA
2669	 60.56	0	2916966..2918669	+	567	75676868	-	Nwi_2684	-	acyl-CoA synthetase
2670	 62.44	0	2918704..2919318	+	204	75676869	-	Nwi_2685	-	hypothetical protein
2671	 59.26	0	2919452..2919937	+	161	75676870	-	Nwi_2686	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2672	 64.09	0	2920007..2920471	-	154	75676871	-	Nwi_2687	-	ribonuclease H
2673	 63.30	0	2920468..2921448	-	326	75676872	-	Nwi_2688	-	homoserine kinase
2674	 62.22	0	2921580..2922569	-	329	75676873	-	Nwi_2689	-	LytB protein
2675	 62.96	0	2922773..2923474	+	233	75676874	-	Nwi_2690	-	hypothetical protein
2676	 62.75	0	2923614..2923970	-	118	75676875	-	Nwi_2691	-	hypothetical protein
2677	 61.97	0	2924268..2925353	-	361	75676876	-	Nwi_2692	-	fructose-1,6-bisphosphate aldolase
2678	 57.85	-1	2925475..2926347	-	290	75676877	-	Nwi_2693	-	phosphoribulokinase/uridine kinase
2679	 60.98	0	2926360..2927397	-	345	75676878	-	Nwi_2694	-	fructose-1,6-bisphosphatase
2680	 59.42	0	2927526..2928464	+	312	75676879	-	Nwi_2695	-	LysR family transcriptional regulator
2681	 70.92	+2	2928685..2929671	+	328	75676880	-	Nwi_2696	-	Sua5/YciO/YrdC/YwlC
2682	 65.14	0	2929671..2931113	+	480	75676881	-	Nwi_2697	-	FAD linked oxidase
2683	 64.19	0	2931176..2931943	-	255	75676882	-	Nwi_2698	-	hypothetical protein
2684	 61.79	0	2932007..2932519	+	170	75676883	-	Nwi_2699	-	hypothetical protein
2685	 68.82	+1	2932519..2932935	+	138	75676884	-	Nwi_2700	-	NUDIX hydrolase
2686	 61.99	0	2932907..2933398	+	163	75676885	-	Nwi_2701	-	hypothetical protein
2687	 62.55	0	2933590..2933856	+	88	75676886	-	Nwi_2702	-	hypothetical protein
2688	 64.41	0	2934012..2935340	-	442	75676887	-	Nwi_2703	-	dihydroorotase
2689	 67.57	+1	2935514..2936395	+	293	75676888	-	Nwi_2704	-	glycine cleavage T protein (aminomethyl transferase)
2690	 61.88	0	2936392..2937018	+	208	75676889	-	Nwi_2705	-	DNA-3-methyladenine glycosylase I
2691	 66.01	0	2937015..2937626	+	203	75676890	-	Nwi_2706	-	metal dependent phosphohydrolase
2692	 66.16	+1	2937705..2938301	-	198	75676891	-	Nwi_2707	-	hypothetical protein
2693	 65.87	0	2938598..2939980	-	460	75676892	-	Nwi_2708	-	cell wall hydrolase, SleB
2694	 61.48	0	2940410..2943496	-	1028	75676893	-	Nwi_2709	-	pyruvate phosphate dikinase
2695	 63.81	0	2943582..2945504	-	640	75676894	-	Nwi_2710	-	peptidase M41, FtsH
2696	 65.68	0	2945691..2946806	-	371	75676895	-	Nwi_2711	-	tRNA(Ile)-lysidine synthase
2697	 61.84	0	2946793..2947020	-	75	75676896	-	Nwi_2712	-	hypothetical protein
2698	 65.47	0	2947158..2948075	-	305	75676897	-	Nwi_2713	-	TPR repeat-containing protein
2699	 63.69	0	2948445..2948948	-	167	75676898	-	Nwi_2714	-	OmpA/MotB
2700	 58.50	-1	2949175..2949921	-	248	75676899	-	Nwi_2715	-	hypothetical protein
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.