IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2562	 66.18	+1	2801313..2801720	-	135	75676761	-	Nwi_2577	-	hypothetical protein
2563	 58.39	-1	2802070..2802528	-	152	75676762	-	Nwi_2578	-	hypothetical protein
2564	 63.39	0	2802564..2803877	-	437	75676763	-	Nwi_2579	-	4Fe-4S ferredoxin, iron-sulfur binding
2565	 69.70	+2	2803874..2805124	-	416	75676764	-	Nwi_2580	-	FAD linked oxidase
2566	 65.19	0	2805170..2806663	-	497	75676765	-	Nwi_2581	-	FAD linked oxidase
2567	 58.46	-1	2807013..2807414	+	133	75676766	-	Nwi_2582	-	cytochrome c, class I
2568	 68.14	+1	2807424..2808104	-	226	75676767	-	Nwi_2583	-	TetR family transcriptional regulator
2569	 54.49	-2	2808382..2808537	-	51	75676768	-	Nwi_2584	-	hypothetical protein
2570	 63.49	0	2808796..2809173	+	125	75676769	-	Nwi_2585	-	hypothetical protein
2571	 62.13	0	2809191..2811374	-	727	75676770	glyS	Nwi_2586	-	glycyl-tRNA synthetase subunit beta
2572	 62.86	0	2811378..2812322	-	314	75676771	glyQ	Nwi_2587	-	glycyl-tRNA synthetase subunit alpha
2573	 68.78	+1	2812515..2812703	-	62	75676772	-	Nwi_2588	-	hypothetical protein
2574	 64.51	0	2812821..2813699	-	292	75676773	-	Nwi_2589	-	peptidase S49
2575	 69.72	+2	2813881..2814666	-	261	75676774	-	Nwi_2590	-	methyltransferase small
2576	 64.31	0	2814647..2814901	-	84	75676775	-	Nwi_2591	-	hypothetical protein
2577	 66.67	+1	2815046..2816056	+	336	75676776	-	Nwi_2592	-	polyprenyl synthetase
2578	 67.75	+1	2816111..2817037	-	308	75676777	-	Nwi_2593	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2579	 61.87	0	2817155..2819008	-	617	75676778	-	Nwi_2594	-	TPR repeat-containing protein
2580	 63.54	0	2819212..2820873	-	553	75676779	-	Nwi_2595	-	FAD dependent oxidoreductase
2581	 67.66	+1	2821077..2821982	+	301	75676780	-	Nwi_2596	-	phage SPO1 DNA polymerase-related protein
2582	 65.65	0	2821992..2823560	-	522	75676781	-	Nwi_2597	-	hypothetical protein
2583	 67.44	+1	2823769..2824545	-	258	75676782	-	Nwi_2598	-	ribonuclease HII/HIII
2584	 61.82	0	2824652..2824981	+	109	75676783	-	Nwi_2599	-	small multidrug resistance protein
2585	 63.48	0	2825032..2826192	-	386	75676784	-	Nwi_2600	-	DNA repair photolyase
2586	 65.07	0	2826259..2826822	-	187	75676785	-	Nwi_2601	-	molybdopterin biosynthesis protein B
2587	 64.51	0	2826836..2827762	-	308	75676786	-	Nwi_2602	-	hypothetical protein
2588	 63.66	0	2828342..2829472	+	376	75676787	-	Nwi_2603	-	DNA methylase N-4/N-6
2589	 57.89	-1	2829832..2830515	+	227	75676788	-	Nwi_2604	-	glutathione S-transferase
2590	 66.83	+1	2830554..2831801	-	415	75676789	-	Nwi_2605	-	A/G-specific adenine glycosylase MutY
2591	 65.87	0	2831840..2832469	+	209	75676790	-	Nwi_2606	-	hypothetical protein
2592	 59.58	0	2832580..2833242	+	220	75676791	-	Nwi_2607	-	protein-disulfide isomerase
2593	 68.61	+1	2833474..2836980	+	1168	75676792	-	Nwi_2608	-	chromosome segregation protein SMC
2594	 67.24	+1	2837017..2838063	+	348	75676793	-	Nwi_2609	-	hypothetical protein
2595	 65.50	0	2838075..2838503	-	142	75676794	-	Nwi_2610	-	hypothetical protein
2596	 63.28	0	2838688..2839248	+	186	75676795	-	Nwi_2611	-	hypothetical protein
2597	 64.58	0	2839351..2840502	+	383	75676796	-	Nwi_2612	-	peptidase M48, Ste24p
2598	 65.74	0	2840551..2841090	-	179	75676797	-	Nwi_2613	-	adenine phosphoribosyltransferase
2599	 65.06	0	2841237..2843420	-	727	75676798	-	Nwi_2614	-	anthranilate synthase
2600	 61.29	0	2843615..2844358	+	247	75676799	-	Nwi_2615	-	YbhB and YbcL
2601	 61.82	0	2844592..2846655	-	687	75676800	-	Nwi_2616	-	cytochrome c1
2602	 66.10	+1	2846707..2847234	-	175	75676801	-	Nwi_2617	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
2603	 64.97	0	2847437..2847907	+	156	75676802	-	Nwi_2618	-	tRNA/rRNA methyltransferase (SpoU)
2604	 66.19	+1	2847904..2848536	+	210	75676803	-	Nwi_2619	-	hypothetical protein
2605	 65.32	0	2848619..2848990	+	123	75676804	-	Nwi_2620	-	6-pyruvoyl tetrahydropterin synthase
2606	 64.78	0	2849027..2849929	+	300	75676805	-	Nwi_2621	-	coproporphyrinogen III oxidase
2607	 69.21	+1	2849949..2851205	-	418	75676806	-	Nwi_2622	-	polynucleotide adenylyltransferase region
2608	 57.95	-1	2851202..2851465	-	87	75676807	-	Nwi_2623	-	hypothetical protein
2609	 63.66	0	2851462..2852127	-	221	75676808	-	Nwi_2624	-	NUDIX hydrolase
2610	 63.04	0	2852136..2852741	-	201	75676809	-	Nwi_2625	-	hypothetical protein
2611	 65.98	0	2852988..2854001	+	337	75676810	-	Nwi_2626	-	ATPase
2612	 68.47	+1	2854001..2854942	+	313	75676811	-	Nwi_2627	-	hypothetical protein
2613	 69.58	+1	2854939..2857752	+	937	75676812	-	Nwi_2628	-	double-transmembrane region
2614	 67.30	+1	2857762..2859825	+	687	75676813	-	Nwi_2629	-	hypothetical protein
2615	 66.67	+1	2859996..2860421	+	141	75676814	-	Nwi_2630	-	hypothetical protein
2616	 65.50	0	2860548..2862947	+	799	75676815	-	Nwi_2631	-	TonB-dependent receptor
2617	 65.38	0	2863133..2863678	-	181	75676816	-	Nwi_2632	-	GCN5-related N-acetyltransferase
2618	 63.60	0	2863740..2864228	-	162	75676817	-	Nwi_2633	-	NUDIX hydrolase
2619	 63.47	0	2864455..2865360	+	301	75676818	-	Nwi_2634	-	metallophosphoesterase
2620	 55.65	-1	2865474..2865827	-	117	75676819	-	Nwi_2635	-	hypothetical protein
2621	 70.08	+2	2866268..2866765	+	165	75676820	-	Nwi_2636	-	hypothetical protein
2622	 65.19	0	2866750..2867019	+	89	75676821	-	Nwi_2637	-	hypothetical protein
2623	 58.33	-1	2867160..2867447	-	95	75676822	-	Nwi_2638	-	hypothetical protein
2624	 56.81	-1	2867444..2867920	-	158	75676823	-	Nwi_2639	-	glutathione peroxidase
2625	 58.91	0	2867970..2868227	-	85	75676824	-	Nwi_2640	-	hypothetical protein
2626	 62.32	0	2868473..2871370	+	965	75676825	-	Nwi_2641	-	bifunctional transaldolase/phosoglucose isomerase
2627	 63.42	0	2871632..2872648	+	338	75676826	-	Nwi_2642	-	6-phosphogluconate dehydrogenase-like protein
2628	 62.24	0	2872645..2874159	+	504	75676827	-	Nwi_2643	-	glucose-6-phosphate 1-dehydrogenase
2629	 63.36	0	2874141..2874896	+	251	75676828	-	Nwi_2644	-	6-phosphogluconolactonase
2630	 63.39	0	2874893..2875411	+	172	75676829	-	Nwi_2645	-	carbohydrate kinase, thermoresistant glucokinase
2631	 62.65	0	2875634..2877523	-	629	75676830	-	Nwi_2646	-	glycoside hydrolase 15-related protein
2632	 59.08	0	2877682..2879658	-	658	75676831	-	Nwi_2647	-	PAS sensor diguanylate cyclase/phophodiesterase
2633	 58.64	-1	2880044..2881015	-	323	75676832	-	Nwi_2648	-	multicopper oxidase
2634	 59.94	0	2881041..2881397	-	118	75676833	-	Nwi_2649	-	cytochrome c, class IC
2635	 62.39	0	2881397..2882074	-	225	75676834	-	Nwi_2650	-	cytochrome c, class I
2636	 59.42	0	2882098..2883174	-	358	75676835	-	Nwi_2651	-	multicopper oxidase3
2637	 61.44	0	2883484..2884134	-	216	75676836	-	Nwi_2652	-	cytochrome c biogenesis factor
2638	 59.44	0	2884371..2884799	-	142	75676837	-	Nwi_2653	-	hypothetical protein
2639	 63.57	0	2885067..2888009	+	980	75676838	-	Nwi_2654	-	putative monovalent cation/H+ antiporter subunit A
2640	 63.42	0	2888009..2888347	+	112	75676839	-	Nwi_2655	-	putative monovalent cation/H+ antiporter subunit C
2641	 64.61	0	2888350..2889957	+	535	75676840	-	Nwi_2656	-	putative monovalent cation/H+ antiporter subunit D
2642	 61.96	0	2889954..2890442	+	162	75676841	-	Nwi_2657	-	putative monovalent cation/H+ antiporter subunit E
2643	 63.44	0	2890439..2890717	+	92	75676842	phaF	Nwi_2658	-	putative monovalent cation/H+ antiporter subunit F
2644	 60.83	0	2890714..2891073	+	119	75676843	-	Nwi_2659	-	putative monovalent cation/H+ antiporter subunit G
2645	 61.98	0	2891179..2891583	-	134	75676844	-	Nwi_2660	-	hypothetical protein
2646	 62.69	0	2891617..2893728	-	703	75676845	-	Nwi_2661	-	multicopper oxidase
2647	 63.07	0	2894397..2895257	-	286	75676846	-	Nwi_2662	-	short-chain dehydrogenase/reductase SDR
2648	 62.73	0	2895706..2896314	+	202	75676847	-	Nwi_2663	-	isochorismatase hydrolase
2649	 56.22	-1	2896380..2896877	+	165	75676848	-	Nwi_2664	-	hypothetical protein
2650	 61.88	0	2897131..2898111	-	326	75676849	-	Nwi_2665	-	helix-turn-helix, Fis-type
2651	 65.07	0	2898108..2898482	-	124	75676850	-	Nwi_2666	-	transposase IS3/IS911
2652	 54.12	-2	2899244..2899522	-	92	75676851	-	Nwi_2667	-	hypothetical protein
2653	 61.71	0	2899607..2900695	-	362	75676852	-	Nwi_2668	-	hypothetical protein
2654	 64.11	0	2900685..2903147	-	820	75676853	-	Nwi_2669	-	hypothetical protein
2655	 63.29	0	2903144..2903854	-	236	75676854	-	Nwi_2670	-	ABC transporter, ATPase subunit
2656	 58.56	-1	2904115..2904657	-	180	75676855	-	Nwi_2671	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2657	 59.23	0	2904779..2905114	+	111	75676856	-	Nwi_2672	-	hypothetical protein
2658	 65.07	0	2905644..2906018	+	124	75676857	-	Nwi_2673	-	transposase IS3/IS911
2659	 61.98	0	2906015..2906995	+	326	75676858	-	Nwi_2674	-	helix-turn-helix, Fis-type
2660	 59.62	0	2907069..2908019	+	316	75676859	-	Nwi_2675	-	glutathione S-transferase
2661	 66.21	+1	2908173..2908826	-	217	75676860	-	Nwi_2676	-	hypothetical protein
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.