IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2328	 62.98	0	2562190..2562732	-	180	75676527	ilvH	Nwi_2342	-	acetolactate synthase 3 regulatory subunit
2329	 62.00	0	2562868..2564646	-	592	75676528	-	Nwi_2343	-	acetolactate synthase 3 catalytic subunit
2330	 67.41	+1	2564960..2565904	-	314	75676529	-	Nwi_2344	-	tRNA isopentenyltransferase
2331	 65.88	0	2565903..2566796	+	297	75676530	-	Nwi_2345	-	phosphoserine phosphatase SerB
2332	 61.44	0	2566954..2568444	-	496	75676531	-	Nwi_2346	-	peptidase S1C, Do
2333	 62.19	0	2568962..2569162	-	66	75676532	-	Nwi_2347	-	hypothetical protein
2334	 60.31	0	2569420..2570316	-	298	75676533	-	Nwi_2348	-	hypothetical protein
2335	 61.62	0	2570313..2571461	-	382	75676534	-	Nwi_2349	-	HflK
2336	 61.64	0	2571619..2572155	-	178	75676535	-	Nwi_2350	-	dihydrofolate reductase region
2337	 60.13	0	2572152..2572946	-	264	75676536	thyA	Nwi_2351	-	thymidylate synthase
2338	 61.57	0	2573702..2574250	+	182	75676537	-	Nwi_2352	-	hypothetical protein
2339	 61.42	0	2574337..2575746	+	469	75676538	fumC	Nwi_2353	-	fumarate hydratase
2340	 60.00	0	2575976..2576170	+	64	75676539	-	Nwi_2354	-	hypothetical protein
2341	 58.82	0	2576167..2576421	+	84	75676540	-	Nwi_2355	-	hypothetical protein
2342	 58.17	-1	2577135..2577581	+	148	75676541	-	Nwi_2356	-	protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis
2343	 65.07	0	2577493..2577867	+	124	162139841	-	Nwi_2357	-	transposase IS3/IS911
2344	 61.98	0	2577864..2578844	+	326	75676543	-	Nwi_2358	-	helix-turn-helix, Fis-type
2345	 55.75	-1	2579094..2579267	-	57	75676544	-	Nwi_2359	-	hypothetical protein
2346	 62.91	0	2579538..2581988	+	816	75676545	-	Nwi_2360	-	UvrD/REP helicase
2347	 58.74	-1	2582115..2583035	+	306	75676546	-	Nwi_2361	-	ABC transporter, ATPase subunit
2348	 56.30	-1	2583037..2583798	+	253	75676547	-	Nwi_2362	-	ABC transporter, inner membrane subunit
2349	 69.01	+1	2583952..2584293	-	113	75676548	-	Nwi_2363	-	hypothetical protein
2350	 60.15	0	2584589..2585401	+	270	75676549	-	Nwi_2364	-	ErfK/YbiS/YcfS/YnhG
2351	 67.16	+1	2585483..2587090	+	535	75676550	-	Nwi_2365	-	FAD dependent oxidoreductase
2352	 54.81	-2	2587441..2587710	+	89	75676551	-	Nwi_2366	-	hypothetical protein
2353	 68.43	+1	2587694..2588659	+	321	75676552	-	Nwi_2367	-	ribosomal L11 methyltransferase
2354	 67.86	+1	2588626..2590560	+	644	75676553	-	Nwi_2368	-	peptidase M24
2355	 52.07	-2	2590843..2591952	+	369	75676554	-	Nwi_2369	-	hypothetical protein
2356	 59.35	0	2592339..2592980	-	213	75676555	-	Nwi_2370	-	ISRm2011-2 transposase protein
2357	 60.68	0	2592932..2593282	-	116	75676556	-	Nwi_2371	-	transposase
2358	 64.47	0	2593519..2594427	+	302	75676557	-	Nwi_2372	-	hypothetical protein
2359	 58.59	-1	2594349..2594843	+	164	75676558	-	Nwi_2373	-	hypothetical protein
2360	 54.71	-2	2594866..2595141	-	91	75676559	-	Nwi_2374	-	hypothetical protein
2361	 59.52	0	2595216..2595425	-	69	75676560	-	Nwi_2375	-	cold-shock protein, DNA-binding
2362	 64.78	0	2595585..2595956	+	123	75676561	-	Nwi_2376	-	hypothetical protein
2363	 62.28	0	2596126..2597583	-	485	75676562	-	Nwi_2377	-	S-adenosyl-L-homocysteine hydrolase
2364	 63.91	0	2597787..2598983	-	398	75676563	-	Nwi_2378	-	S-adenosylmethionine synthetase
2365	 62.31	0	2599040..2600392	-	450	75676564	-	Nwi_2379	-	hypothetical protein
2366	 64.30	0	2600738..2602048	+	436	75676565	-	Nwi_2380	-	UDP-glucose/GDP-mannose dehydrogenase
2367	 68.23	+1	2602208..2602399	+	63	75676566	-	Nwi_2381	-	hypothetical protein
2368	 60.96	0	2602422..2603279	-	285	75676567	purU	Nwi_2382	-	formyltetrahydrofolate deformylase
2369	 60.78	0	2603651..2604652	+	333	75676568	-	Nwi_2383	-	glycosyl transferase family protein
2370	 60.15	0	2604834..2605784	-	316	75676569	-	Nwi_2384	-	NAD-dependent epimerase/dehydratase
2371	 59.58	0	2605765..2606850	-	361	75676570	-	Nwi_2385	-	GDP-mannose 4,6-dehydratase
2372	 62.42	0	2607104..2608303	+	399	75676571	-	Nwi_2386	-	glycosyl transferase, group 1
2373	 63.77	0	2608300..2609265	+	321	75676572	-	Nwi_2387	-	NAD-dependent epimerase/dehydratase
2374	 61.49	0	2609417..2610730	+	437	75676573	-	Nwi_2388	-	aminotransferase class-III
2375	 55.36	-1	2610737..2611435	-	232	75676574	-	Nwi_2389	-	hypothetical protein
2376	 57.40	-1	2611404..2612180	-	258	75676575	-	Nwi_2390	-	histidine biosynthesis
2377	 55.56	-1	2612191..2612829	-	212	75676576	-	Nwi_2391	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
2378	 56.40	-1	2612855..2614033	-	392	75676577	-	Nwi_2392	-	LPS biosynthesis protein
2379	 63.47	0	2614070..2614882	-	270	75676578	-	Nwi_2393	-	Short-chain dehydrogenase/reductase SDR
2380	 58.31	-1	2614879..2615919	-	346	75676579	-	Nwi_2394	-	nucleotidyl transferase
2381	 60.56	0	2615916..2616554	-	212	75676580	-	Nwi_2395	-	hexapeptide transferase family protein
2382	 63.17	0	2616551..2617666	-	371	75676581	-	Nwi_2396	-	NeuB, antifreeze-like protein
2383	 59.33	0	2617772..2618521	+	249	75676582	-	Nwi_2397	-	acylneuraminate cytidylyltransferase
2384	 63.41	0	2618500..2619729	+	409	75676583	-	Nwi_2398	-	UDP-N-acetylglucosamine 2-epimerase
2385	 54.84	-2	2619798..2620955	+	385	75676584	-	Nwi_2399	-	hypothetical protein
2386	 54.35	-2	2620990..2621793	-	267	75676585	-	Nwi_2400	-	methyltransferase FkbM
2387	 54.15	-2	2621928..2622878	+	316	75676586	-	Nwi_2401	-	NAD-dependent epimerase/dehydratase
2388	 53.58	-2	2622903..2624369	-	488	75676587	-	Nwi_2402	-	hypothetical protein
2389	 53.57	-2	2624638..2625897	-	419	75676588	-	Nwi_2403	-	O-antigen and teichoic acid export protein
2390	 53.51	-2	2626101..2627324	-	407	75676589	-	Nwi_2404	-	hypothetical protein
2391	 57.98	-1	2627501..2628709	-	402	75676590	-	Nwi_2405	-	DegT/DnrJ/EryC1/StrS aminotransferase
2392	 56.12	-1	2628719..2629723	-	334	75676591	-	Nwi_2406	-	NAD-dependent epimerase/dehydratase
2393	 59.73	0	2630120..2631100	-	326	75676592	-	Nwi_2407	-	helix-turn-helix, Fis-type
2394	 60.53	0	2631097..2631471	-	124	75676593	-	Nwi_2408	-	transposase IS3/IS911
2395	 51.68	-2	2631492..2632145	+	217	75676594	-	Nwi_2409	-	hypothetical protein
2396	 60.73	0	2632314..2633594	+	426	75676595	-	Nwi_2410	-	O-antigen polymerase
2397	 60.39	0	2633766..2634482	-	238	75676596	-	Nwi_2411	-	ISRm2011-2 transposase protein
2398	 60.66	0	2634866..2635231	+	121	75676597	-	Nwi_2412	-	ISBm1, transposase orfA
2399	 62.02	0	2635754..2637001	-	415	75676598	-	Nwi_2413	-	aminotransferase, class V
2400	 65.19	0	2637292..2637561	+	89	75676599	-	Nwi_2414	-	hypothetical protein
2401	 56.80	-1	2637621..2637914	+	97	75676600	-	Nwi_2415	-	hypothetical protein
2402	 62.36	0	2638083..2638523	+	146	75676601	-	Nwi_2416	-	histidine triad (HIT) protein
2403	 62.82	0	2638700..2639452	-	250	75676602	-	Nwi_2417	-	cyclic nucleotide-binding protein
2404	 66.25	+1	2639680..2640159	+	159	75676603	-	Nwi_2418	-	hypothetical protein
2405	 64.60	0	2640188..2641447	-	419	75676604	-	Nwi_2419	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2406	 65.42	0	2641444..2642085	-	213	75676605	bioD	Nwi_2420	-	dithiobiotin synthetase
2407	 66.93	+1	2642082..2643218	-	378	75676606	-	Nwi_2421	-	8-amino-7-oxononanoate synthase
2408	 58.79	-1	2643259..2643588	-	109	75676607	-	Nwi_2422	-	hypothetical protein
2409	 64.11	0	2643783..2644760	+	325	75676608	-	Nwi_2423	-	hypothetical protein
2410	 63.52	0	2644813..2645796	+	327	75676609	-	Nwi_2424	-	quinolinate synthetase
2411	 68.17	+1	2645793..2647322	+	509	75676610	-	Nwi_2425	-	L-aspartate oxidase
2412	 66.55	+1	2647341..2648204	+	287	75676611	-	Nwi_2426	-	nicotinate-nucleotide pyrophosphorylase
2413	 55.85	-1	2648267..2648719	+	150	75676612	-	Nwi_2427	-	hypothetical protein
2414	 55.31	-1	2649252..2649665	+	137	75676613	-	Nwi_2428	-	hypothetical protein
2415	 60.03	0	2650050..2651270	+	406	75676614	-	Nwi_2429	-	diguanylate cyclase
2416	 59.89	0	2651690..2652589	-	299	75676615	-	Nwi_2430	-	RNA polymerase factor sigma-32
2417	 62.88	0	2652806..2653861	-	351	75676616	-	Nwi_2431	-	pseudouridine synthase, RluD
2418	 65.77	0	2653860..2654192	+	110	75676617	-	Nwi_2432	-	hypothetical protein
2419	 59.73	0	2655487..2656467	-	326	75676618	-	Nwi_2433	-	helix-turn-helix, Fis-type
2420	 60.53	0	2656464..2656838	-	124	75676619	-	Nwi_2434	-	transposase IS3/IS911
2421	 51.87	-2	2657155..2658195	-	346	75676620	-	Nwi_2436	-	hypothetical protein
2422	 60.39	0	2658740..2659456	+	238	75676621	-	Nwi_2437	-	ISRm2011-2 transposase protein
2423	 63.74	0	2659543..2660361	-	272	75676622	-	Nwi_2438	-	lytic murein transglycosylase
2424	 64.53	0	2660420..2661121	+	233	75676623	-	Nwi_2439	-	hypothetical protein
2425	 62.16	0	2661161..2663314	-	717	75676624	-	Nwi_2440	-	RNA polymerase sigma factor RpoD
2426	 60.42	0	2664131..2666035	-	634	75676625	dnaG	Nwi_2441	-	DNA primase
2427	 62.50	0	2666169..2666720	+	183	75676626	-	Nwi_2442	-	hypothetical protein
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.