IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2208	 66.91	+1	2417238..2417654	+	138	75676407	-	Nwi_2222	-	hypothetical protein
2209	 65.50	0	2417730..2418158	+	142	75676408	-	Nwi_2223	-	Fe-S metabolism associated SufE
2210	 60.66	0	2418437..2418802	+	121	75676409	-	Nwi_2224	-	ISBm1, transposase orfA
2211	 58.68	-1	2419264..2420214	+	316	75676410	-	Nwi_2225	-	integrase, catalytic region
2212	 66.36	+1	2420242..2421234	-	330	75676411	-	Nwi_2226	-	ATPase involved in DNA replication initiation
2213	 60.87	0	2421381..2421794	-	137	75676412	-	Nwi_2227	-	ROSMUCR transcriptional regulator
2214	 63.52	0	2421929..2422753	-	274	75676413	-	Nwi_2228	-	hypothetical protein
2215	 61.62	0	2423148..2424554	-	468	75676414	-	Nwi_2229	-	hypothetical protein
2216	 62.10	0	2424589..2425881	-	430	75676415	-	Nwi_2230	-	hypothetical protein
2217	 62.58	0	2426011..2427576	-	521	75676416	-	Nwi_2231	-	hypothetical protein
2218	 62.01	0	2428157..2428564	+	135	75676417	-	Nwi_2232	-	hypothetical protein
2219	 66.33	+1	2428648..2429526	+	292	75676418	-	Nwi_2233	-	dihydropteroate synthase
2220	 64.48	0	2429523..2429888	+	121	75676419	-	Nwi_2234	-	dihydroneopterin aldolase
2221	 65.45	0	2429897..2430388	+	163	75676420	-	Nwi_2235	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
2222	 66.93	+1	2430469..2432388	+	639	75676421	-	Nwi_2236	-	methylmalonyl-CoA mutase
2223	 64.09	0	2432385..2432849	+	154	75676422	-	Nwi_2237	-	glutathione-dependent formaldehyde-activating, GFA
2224	 65.15	0	2432853..2435021	+	722	75676423	-	Nwi_2238	-	methylmalonyl-CoA mutase
2225	 60.52	0	2435185..2435997	+	270	75676424	-	Nwi_2239	-	hypothetical protein
2226	 67.79	+1	2435994..2436974	+	326	75676425	-	Nwi_2240	-	arginine/ornithine transport system ATPase
2227	 66.82	+1	2437120..2437761	+	213	75676426	-	Nwi_2241	-	peptidase C15, pyroglutamyl peptidase I
2228	 64.19	0	2438008..2439300	+	430	75676427	-	Nwi_2242	-	Bcr/CflA subfamily drug resistance transporter
2229	 65.94	0	2439403..2440770	+	455	75676428	-	Nwi_2243	-	nitrous oxidase accessory protein
2230	 62.42	0	2440934..2441428	-	164	75676429	-	Nwi_2244	-	hypothetical protein
2231	 50.98	-2	2441839..2442042	-	67	75676430	-	Nwi_2245	-	CsbD-like protein
2232	 67.04	+1	2442826..2444709	-	627	75676431	-	Nwi_2246	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
2233	 66.81	+1	2444787..2445479	-	230	75676432	-	Nwi_2247	-	hypothetical protein
2234	 58.07	-1	2445476..2446045	-	189	75676433	-	Nwi_2248	-	RNA polymerase sigma factor
2235	 60.57	0	2446514..2446759	-	81	75676434	-	Nwi_2249	-	hypothetical protein
2236	 62.83	0	2446874..2447680	+	268	75676435	-	Nwi_2250	-	hypothetical protein
2237	 64.04	0	2447786..2448508	+	240	75676436	-	Nwi_2251	-	hypothetical protein
2238	 63.97	0	2448842..2449621	+	259	75676437	-	Nwi_2252	-	enoyl-CoA hydratase/isomerase
2239	 62.61	0	2449667..2451514	-	615	75676438	-	Nwi_2253	-	hypothetical protein
2240	 66.51	+1	2451710..2452957	-	415	75676439	-	Nwi_2254	-	threonine dehydratase
2241	 62.07	0	2453061..2456588	-	1175	75676440	dnaE2	Nwi_2255	-	error-prone DNA polymerase
2242	 66.27	+1	2456585..2458090	-	501	75676441	-	Nwi_2256	-	hypothetical protein
2243	 67.77	+1	2458131..2458943	-	270	75676442	-	Nwi_2257	-	hypothetical protein
2244	 62.25	0	2459113..2460357	+	414	75676443	-	Nwi_2258	-	Elongator protein 3/MiaB/NifB
2245	 62.10	0	2460354..2461097	+	247	75676444	-	Nwi_2259	-	phage SPO1 DNA polymerase-related protein
2246	 60.39	0	2461390..2462106	+	238	75676445	-	Nwi_2260	-	ISRm2011-2 transposase protein
2247	 64.01	0	2462166..2462843	+	225	75676446	-	Nwi_2261	-	phage SPO1 DNA polymerase-related protein
2248	 64.79	0	2462884..2464053	-	389	75676447	-	Nwi_2262	-	peptidase M20D, amidohydrolase
2249	 59.48	0	2464130..2465521	-	463	75676448	-	Nwi_2263	-	aminotransferase class-III
2250	 60.59	0	2465631..2466272	+	213	75676449	-	Nwi_2264	-	hypothetical protein
2251	 61.60	0	2466240..2468903	-	887	75676450	-	Nwi_2265	-	hypothetical protein
2252	 60.21	0	2469319..2470263	+	314	75676451	ispH	Nwi_2266	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2253	 59.91	0	2470310..2471479	+	389	75676452	-	Nwi_2267	-	Fe-S oxidoreductase
2254	 65.58	0	2472000..2472830	-	276	75676453	-	Nwi_2268	-	hypothetical protein
2255	 63.21	0	2472851..2474815	-	654	75676454	-	Nwi_2269	-	terpene synthase/squalene cyclase
2256	 66.51	+1	2474829..2476082	-	417	75676455	-	Nwi_2270	-	amine oxidase
2257	 63.32	0	2476082..2476918	-	278	75676456	-	Nwi_2271	-	squalene/phytoene synthase
2258	 62.80	0	2476915..2477793	-	292	75676457	-	Nwi_2272	-	squalene/phytoene synthase
2259	 57.75	-1	2477987..2478244	-	85	75676458	-	Nwi_2273	-	hypothetical protein
2260	 62.67	0	2478790..2479290	+	166	75676459	-	Nwi_2274	-	hypothetical protein
2261	 62.53	0	2479332..2481725	-	797	75676460	-	Nwi_2275	-	RND superfamily transporter
2262	 58.97	0	2482067..2483728	-	553	75676461	-	Nwi_2276	-	Fe-S oxidoreductase
2263	 67.93	+1	2484111..2485460	-	449	75676462	-	Nwi_2277	-	amidase
2264	 63.58	0	2485555..2488341	-	928	75676463	-	Nwi_2278	-	phosphoenolpyruvate carboxylase
2265	 62.82	0	2488894..2490090	+	398	75676464	-	Nwi_2279	-	cytochrome P450
2266	 63.80	0	2490127..2491347	+	406	75676465	-	Nwi_2280	-	OsmC-like protein
2267	 53.57	-2	2491412..2491663	-	83	75676466	-	Nwi_2281	-	hypothetical protein
2268	 65.07	0	2491756..2493009	-	417	75676467	-	Nwi_2282	-	FAD dependent oxidoreductase
2269	 61.56	0	2493245..2496340	-	1031	75676468	-	Nwi_2283	-	acriflavin resistance protein
2270	 63.04	0	2496543..2497754	-	403	75676469	-	Nwi_2284	-	secretion protein HlyD
2271	 58.97	0	2497756..2498457	-	233	75676470	-	Nwi_2285	-	TetR family transcriptional regulator
2272	 63.65	0	2498592..2499851	-	419	75676471	-	Nwi_2286	-	Glu/Leu/Phe/Val dehydrogenase
2273	 63.72	0	2500129..2501349	-	406	75676472	-	Nwi_2287	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2274	 62.98	0	2501580..2502854	+	424	75676473	-	Nwi_2288	-	beta-lactamase
2275	 64.85	0	2502904..2503785	-	293	75676474	-	Nwi_2289	-	HpcH/HpaI aldolase
2276	 58.06	-1	2503782..2504234	-	150	75676475	-	Nwi_2290	-	MaoC-like dehydratase
2277	 59.17	0	2504641..2505000	+	119	75676476	-	Nwi_2291	-	hypothetical protein
2278	 65.84	0	2505053..2505538	-	161	75676477	-	Nwi_2292	-	hypothetical protein
2279	 58.09	-1	2506169..2506471	-	100	75676478	-	Nwi_2293	-	hypothetical protein
2280	 63.70	0	2506682..2509003	-	773	75676479	-	Nwi_2294	-	TonB-dependent siderophore receptor
2281	 58.33	-1	2509115..2509642	-	175	75676480	-	Nwi_2295	-	GCN5-related N-acetyltransferase
2282	 61.97	0	2509750..2512008	-	752	75676481	-	Nwi_2296	-	TonB-dependent receptor
2283	 67.17	+1	2512116..2513099	-	327	75676482	-	Nwi_2297	-	FecR protein
2284	 61.95	0	2513821..2514711	-	296	75676483	-	Nwi_2298	-	xylose isomerase-like TIM barrel
2285	 60.03	0	2514690..2516000	-	436	75676484	-	Nwi_2299	-	hypothetical protein
2286	 65.72	0	2515997..2517268	-	423	75676485	-	Nwi_2300	-	acyl-CoA synthetase
2287	 65.01	0	2517265..2518953	-	562	75676486	-	Nwi_2301	-	siderophore synthetase component
2288	 63.33	0	2518982..2520811	-	609	75676487	-	Nwi_2302	-	siderophore synthetase component
2289	 61.08	0	2521034..2521534	+	166	75676488	-	Nwi_2303	-	fec I like protein
2290	 56.39	-1	2521277..2522074	-	265	75676489	-	Nwi_2304	-	hypothetical protein
2291	 68.43	+1	2522735..2523697	+	320	75676490	-	Nwi_2305	-	MotA/TolQ/ExbB proton channel
2292	 64.76	0	2523702..2524172	+	156	75676491	-	Nwi_2306	-	biopolymer transport protein ExbD/TolR
2293	 69.70	+2	2524174..2524965	+	263	75676492	-	Nwi_2307	-	TonB like protein
2294	 55.37	-1	2525226..2525579	-	117	75676493	-	Nwi_2308	-	hypothetical protein
2295	 62.19	0	2526016..2527869	-	617	75676494	-	Nwi_2309	-	glycoside hydrolase 15-related
2296	 63.80	0	2527984..2529099	-	371	75676495	-	Nwi_2310	-	short chain dehydrogenase
2297	 65.10	0	2529273..2530037	+	254	75676496	-	Nwi_2311	-	hypothetical protein
2298	 63.78	0	2530034..2530552	+	172	75676497	-	Nwi_2312	-	hypothetical protein
2299	 67.48	+1	2530525..2531259	+	244	75676498	-	Nwi_2313	-	cytochrome c oxidase, subunit II
2300	 64.33	0	2531256..2533775	+	839	75676499	-	Nwi_2314	-	cytochrome c oxidase, subunit I
2301	 63.36	0	2533772..2534134	+	120	75676500	-	Nwi_2315	-	hypothetical protein
2302	 64.85	0	2534146..2534640	-	164	75676501	-	Nwi_2316	-	hypothetical protein
2303	 65.93	0	2534950..2535354	+	134	75676502	-	Nwi_2317	-	hypothetical protein
2304	 63.16	0	2535457..2537796	+	779	75676503	-	Nwi_2318	-	TonB-dependent siderophore receptor
2305	 64.07	0	2537868..2539253	+	461	75676504	-	Nwi_2319	-	propeptide, PepSY amd peptidase M4
2306	 55.76	-1	2539381..2539701	+	106	75676505	-	Nwi_2320	-	small multidrug resistance protein
2307	 57.71	-1	2539728..2540888	+	386	75676506	-	Nwi_2321	-	amidinotransferase
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.