IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2127	 64.98	0	2337465..2337761	+	98	75676326	-	Nwi_2141	-	prophage CP4-57 regulatory
2128	 64.12	0	2337715..2338971	-	418	75676327	-	Nwi_2142	-	phage integrase
2129	 61.50	0	2339269..2340876	-	535	75676328	guaA	Nwi_2143	-	bifunctional GMP synthase/glutamine amidotransferase protein
2130	 65.97	0	2341024..2342322	-	432	75676329	-	Nwi_2144	-	tRNA and rRNA cytosine-C5-methylase
2131	 60.88	0	2342432..2343088	-	218	75676330	-	Nwi_2145	-	hypothetical protein
2132	 65.26	0	2343193..2344689	-	498	75676331	-	Nwi_2146	-	inositol-5-monophosphate dehydrogenase
2133	 61.04	0	2344996..2345244	-	82	75676332	-	Nwi_2147	-	hypothetical protein
2134	 63.34	0	2345363..2346835	+	490	75676333	-	Nwi_2148	-	EmrB/QacA family drug resistance transporter
2135	 60.42	0	2346868..2347539	+	223	75676334	-	Nwi_2149	-	hypothetical protein
2136	 64.21	0	2347545..2348237	-	230	75676335	-	Nwi_2150	-	ribosomal RNA methyltransferase RrmJ/FtsJ
2137	 62.73	0	2348403..2349470	-	355	75676336	-	Nwi_2151	-	Ppx/GppA phosphatase
2138	 67.93	+1	2349865..2350338	+	157	75676337	-	Nwi_2152	-	hypothetical protein
2139	 66.11	+1	2350344..2352152	+	602	75676338	-	Nwi_2153	-	ABC transporter, ATPase subunit
2140	 66.67	+1	2352157..2353383	-	408	75676339	-	Nwi_2154	-	hypothetical protein
2141	 62.47	0	2353405..2353881	-	158	75676340	-	Nwi_2155	-	MaoC-like dehydratase
2142	 64.56	0	2353950..2354849	-	299	75676341	-	Nwi_2156	-	3-hydroxyisobutyrate dehydrogenase
2143	 63.69	0	2354988..2356061	-	357	75676342	-	Nwi_2157	-	enoyl-CoA hydratase
2144	 64.40	0	2356058..2357203	-	381	75676343	-	Nwi_2158	-	acyl-CoA dehydrogenase
2145	 62.75	0	2357220..2358752	-	510	75676344	-	Nwi_2159	-	methylmalonate-semialdehyde dehydrogenase
2146	 64.44	0	2358808..2359977	-	389	75676345	-	Nwi_2160	-	acetyl-CoA acetyltransferase
2147	 58.88	0	2360266..2360856	-	196	75676346	-	Nwi_2161	-	nuclear protein SET
2148	 59.55	0	2361040..2362008	+	322	75676347	-	Nwi_2162	-	hypothetical protein
2149	 62.42	0	2362144..2362614	+	156	75676348	-	Nwi_2163	-	hypothetical protein
2150	 56.67	-1	2362711..2363070	+	119	75676349	-	Nwi_2164	-	glutathione-dependent formaldehyde-activating, GFA
2151	 65.71	0	2363329..2364267	-	312	75676350	-	Nwi_2165	-	hypothetical protein
2152	 62.12	0	2364396..2364791	-	131	75676351	-	Nwi_2166	-	hypothetical protein
2153	 63.15	0	2364911..2366218	+	435	75676352	-	Nwi_2167	-	adenylosuccinate lyase
2154	 62.17	0	2366359..2367003	+	214	75676353	-	Nwi_2168	-	hypothetical protein
2155	 54.27	-2	2367111..2368538	+	475	75676354	-	Nwi_2169	-	phosphate-selective porin O and P
2156	 60.87	0	2369035..2369655	+	206	75676355	-	Nwi_2170	-	transglutaminase-like cysteine peptidase, BTLCP
2157	 60.00	0	2370063..2370527	-	154	75676356	-	Nwi_2171	-	peptidylprolyl isomerase, FKBP-type
2158	 63.28	0	2370627..2371157	-	176	75676357	-	Nwi_2172	-	carbonic anhydrase
2159	 63.94	0	2371213..2371542	-	109	75676358	-	Nwi_2173	-	hypothetical protein
2160	 64.44	0	2371745..2372461	+	238	75676359	-	Nwi_2174	-	hypothetical protein
2161	 57.08	-1	2372472..2372690	-	72	75676360	-	Nwi_2175	-	hypothetical protein
2162	 62.45	0	2372790..2373620	-	276	75676361	-	Nwi_2176	-	serine O-acetyltransferase
2163	 62.39	0	2373772..2375244	+	490	75676362	-	Nwi_2177	-	hypothetical protein
2164	 63.48	0	2375202..2375954	-	250	75676363	-	Nwi_2178	-	alpha/beta hydrolase fold
2165	 66.87	+1	2376010..2376495	-	161	75676364	-	Nwi_2179	-	hypothetical protein
2166	 66.39	+1	2376081..2377181	-	366	75676365	-	Nwi_2180	-	hypothetical protein
2167	 60.16	0	2377527..2377772	+	81	75676366	-	Nwi_2181	-	hypothetical protein
2168	 69.09	+1	2377745..2378983	+	412	75676367	-	Nwi_2182	-	monooxygenase, FAD-binding
2169	 64.87	0	2379034..2379423	-	129	75676368	-	Nwi_2183	-	hypothetical protein
2170	 64.62	0	2379510..2380781	-	423	75676369	-	Nwi_2184	-	peptidase M29, aminopeptidase II
2171	 57.38	-1	2380927..2381109	-	60	75676370	-	Nwi_2185	-	hypothetical protein
2172	 59.65	0	2381426..2381824	+	132	75676371	-	Nwi_2186	-	hypothetical protein
2173	 59.08	0	2381840..2382445	-	201	75676372	-	Nwi_2187	-	DSBA oxidoreductase
2174	 62.13	0	2382689..2383195	-	168	75676373	-	Nwi_2188	-	xanthine-guanine phosphoribosyltransferase
2175	 60.59	0	2383295..2384035	-	246	75676374	-	Nwi_2189	-	molybdopterin-biosynthesis enzyme MoeA
2176	 58.00	-1	2384208..2384507	-	99	75676375	-	Nwi_2190	-	hypothetical protein
2177	 63.84	0	2384930..2385247	+	105	75676376	groES	Nwi_2191	-	co-chaperonin GroES
2178	 64.59	0	2385288..2386925	+	545	75676377	groEL	Nwi_2192	-	chaperonin GroEL
2179	 49.78	-2	2387351..2387575	-	74	75676378	-	Nwi_2193	-	hypothetical protein
2180	 66.47	+1	2387807..2389303	-	498	75676379	-	Nwi_2194	-	hypothetical protein
2181	 63.22	0	2389311..2390441	-	376	75676380	-	Nwi_2195	-	glycosyl transferase family protein
2182	 61.57	0	2390732..2391535	+	267	75676381	-	Nwi_2196	-	hypothetical protein
2183	 63.42	0	2391547..2392008	+	153	75676382	-	Nwi_2197	-	hypothetical protein
2184	 63.86	0	2392133..2392879	+	248	75676383	-	Nwi_2198	-	hypothetical protein
2185	 65.48	0	2392911..2394515	-	534	75676384	-	Nwi_2199	-	molybdopterin binding protein
2186	 62.34	0	2394512..2395204	-	230	75676385	-	Nwi_2200	-	hypothetical protein
2187	 65.12	0	2395248..2395571	-	107	75676386	-	Nwi_2201	-	hypothetical protein
2188	 62.92	0	2395555..2396781	-	408	75676387	-	Nwi_2202	-	VWA containing CoxE-like
2189	 62.22	0	2396794..2397738	-	314	75676388	-	Nwi_2203	-	AAA ATPase
2190	 63.94	0	2397740..2398546	-	268	75676389	-	Nwi_2204	-	molybdopterin dehydrogenase, FAD-binding
2191	 62.76	0	2398592..2399077	-	161	75676390	-	Nwi_2205	-	aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS
2192	 58.84	0	2399205..2399651	-	148	75676391	-	Nwi_2206	-	carbon monoxide dehydrogenase subunit G
2193	 62.45	0	2399789..2400571	+	260	75676392	-	Nwi_2207	-	alpha/beta hydrolase
2194	 62.86	0	2400730..2401254	-	174	75676393	-	Nwi_2208	-	hypothetical protein
2195	 59.34	0	2401671..2402585	+	304	75676394	-	Nwi_2209	-	branched chain amino acid ABC transporter permease
2196	 64.19	0	2402611..2403981	+	456	75676395	-	Nwi_2210	-	ABC-type branched-chain amino acid transport system permease component
2197	 66.67	+1	2403978..2404814	+	278	75676396	-	Nwi_2211	-	ABC transporter, ATPase subunit
2198	 65.86	0	2404811..2405554	+	247	75676397	-	Nwi_2212	-	ABC transporter, ATPase subunit
2199	 59.14	0	2405842..2406957	+	371	75676398	-	Nwi_2213	-	extracellular ligand-binding receptor
2200	 61.50	0	2407053..2407787	-	244	75676399	-	Nwi_2214	-	cytochrome c biogenesis protein, transmembrane region
2201	 67.07	+1	2407938..2408936	+	332	75676400	-	Nwi_2215	-	peptidase S58, DmpA
2202	 67.44	+1	2409121..2409378	+	85	75676401	-	Nwi_2216	-	hypothetical protein
2203	 62.09	0	2409482..2410684	-	400	75676402	-	Nwi_2217	-	hypothetical protein
2204	 63.11	0	2410903..2411604	+	233	75676403	-	Nwi_2218	-	ribulose-phosphate 3-epimerase
2205	 62.19	0	2412121..2414199	+	692	75676404	-	Nwi_2219	-	TonB-dependent receptor
2206	 67.01	+1	2414385..2414966	-	193	75676405	-	Nwi_2220	-	hypothetical protein
2207	 64.63	0	2414989..2416806	-	605	75676406	-	Nwi_2221	-	Signal transduction histidine kinase
2208	 66.91	+1	2417238..2417654	+	138	75676407	-	Nwi_2222	-	hypothetical protein
2209	 65.50	0	2417730..2418158	+	142	75676408	-	Nwi_2223	-	Fe-S metabolism associated SufE
2210	 60.66	0	2418437..2418802	+	121	75676409	-	Nwi_2224	-	ISBm1, transposase orfA
2211	 58.68	-1	2419264..2420214	+	316	75676410	-	Nwi_2225	-	integrase, catalytic region
2212	 66.36	+1	2420242..2421234	-	330	75676411	-	Nwi_2226	-	ATPase involved in DNA replication initiation
2213	 60.87	0	2421381..2421794	-	137	75676412	-	Nwi_2227	-	ROSMUCR transcriptional regulator
2214	 63.52	0	2421929..2422753	-	274	75676413	-	Nwi_2228	-	hypothetical protein
2215	 61.62	0	2423148..2424554	-	468	75676414	-	Nwi_2229	-	hypothetical protein
2216	 62.10	0	2424589..2425881	-	430	75676415	-	Nwi_2230	-	hypothetical protein
2217	 62.58	0	2426011..2427576	-	521	75676416	-	Nwi_2231	-	hypothetical protein
2218	 62.01	0	2428157..2428564	+	135	75676417	-	Nwi_2232	-	hypothetical protein
2219	 66.33	+1	2428648..2429526	+	292	75676418	-	Nwi_2233	-	dihydropteroate synthase
2220	 64.48	0	2429523..2429888	+	121	75676419	-	Nwi_2234	-	dihydroneopterin aldolase
2221	 65.45	0	2429897..2430388	+	163	75676420	-	Nwi_2235	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
2222	 66.93	+1	2430469..2432388	+	639	75676421	-	Nwi_2236	-	methylmalonyl-CoA mutase
2223	 64.09	0	2432385..2432849	+	154	75676422	-	Nwi_2237	-	glutathione-dependent formaldehyde-activating, GFA
2224	 65.15	0	2432853..2435021	+	722	75676423	-	Nwi_2238	-	methylmalonyl-CoA mutase
2225	 60.52	0	2435185..2435997	+	270	75676424	-	Nwi_2239	-	hypothetical protein
2226	 67.79	+1	2435994..2436974	+	326	75676425	-	Nwi_2240	-	arginine/ornithine transport system ATPase
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.