IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
167	 63.18	0	194958..195530	+	190	75674366	-	Nwi_0167	-	TPR repeat-containing protein
168	 58.61	-1	195801..196160	-	119	75674367	-	Nwi_0168	-	hypothetical protein
169	 56.37	-1	196227..197042	-	271	75674368	-	Nwi_0169	-	hypothetical protein
170	 51.23	-2	197184..197468	+	94	75674369	-	Nwi_0170	-	hypothetical protein
171	 65.22	0	197468..198088	+	206	75674370	-	Nwi_0171	-	3'-5' exonuclease
172	 63.06	0	198297..198989	+	230	75674371	-	Nwi_0172	-	hypothetical protein
173	 62.28	0	198986..199669	+	227	75674372	-	Nwi_0173	-	OstA-like protein
174	 66.57	+1	199980..200978	+	332	75674373	-	Nwi_0174	-	ABC transporter, ATPase subunit
175	 65.62	0	201036..201323	-	95	75674374	-	Nwi_0175	-	hypothetical protein
176	 72.18	+2	201488..201868	+	126	75674375	-	Nwi_0176	-	hypothetical protein
177	 64.09	0	202121..203752	+	543	75674376	-	Nwi_0177	-	RNA polymerase factor sigma-54
178	 62.98	0	203809..204405	+	198	75674377	-	Nwi_0178	-	sigma 54 modulation protein/ribosomal protein S30EA
179	 63.20	0	204654..205115	+	153	75674378	-	Nwi_0179	-	PTS IIA-like nitrogen-regulatory protein PtsN
180	 63.84	0	205145..205675	-	176	75674379	-	Nwi_0180	-	transposase, IS4
181	 61.90	0	205528..205926	-	132	75674380	-	Nwi_0181	-	transposase
182	 62.51	0	205982..207352	-	456	75674381	-	Nwi_0182	-	glutamate--cysteine ligase
183	 67.45	+1	207838..211017	+	1059	75674382	-	Nwi_0183	-	Sel1 repeat-containing protein
184	 65.41	0	211095..212126	+	343	75674383	-	Nwi_0184	-	hypothetical protein
185	 64.90	0	212123..212914	+	263	75674384	-	Nwi_0185	-	hypothetical protein
186	 66.12	+1	213080..213805	-	241	75674385	-	Nwi_0186	-	metallophosphoesterase
187	 66.03	0	213813..216320	-	835	75674386	-	Nwi_0187	-	DEAD/DEAH box helicase
188	 63.36	0	216696..218057	+	453	75674387	-	Nwi_0188	-	outer membrane protein
189	 66.56	+1	218552..219475	+	307	75674388	-	Nwi_0189	-	heat shock protein HtpX
190	 66.50	+1	219789..221012	+	407	75674389	-	Nwi_0190	-	hypothetical protein
191	 66.24	+1	221163..222323	-	386	75674390	-	Nwi_0191	-	coproporphyrinogen III oxidase
192	 67.45	+1	222310..222945	-	211	75674391	-	Nwi_0192	-	putative deoxyribonucleotide triphosphate pyrophosphatase
193	 65.55	0	223063..223776	-	237	75674392	rph	Nwi_0193	-	ribonuclease PH
194	 63.73	0	223971..225059	+	362	75674393	hrcA	Nwi_0194	-	heat-inducible transcription repressor
195	 64.31	0	225153..225746	+	197	75674394	-	Nwi_0195	-	GrpE protein
196	 61.34	0	225812..226750	-	312	75674395	-	Nwi_0196	-	hypothetical protein
197	 62.18	0	227144..229036	+	630	75674396	dnaK	Nwi_0197	-	molecular chaperone DnaK
198	 62.53	0	229185..230321	+	378	75674397	-	Nwi_0198	-	heat shock protein DnaJ
199	 63.18	0	230415..231017	+	200	75674398	-	Nwi_0199	-	ribosomal RNA adenine methylase transferase
200	 60.44	0	231103..231696	+	197	75674399	-	Nwi_0200	-	NADPH-dependent FMN reductase
201	 64.13	0	231747..232613	+	288	75674400	-	Nwi_0201	-	dihydrodipicolinate reductase
202	 62.50	0	232780..233403	+	207	75674401	-	Nwi_0202	-	phosphoglyceromutase
203	 66.03	0	233410..234354	-	314	75674402	-	Nwi_0203	-	methylated-DNA-(protein)-cysteine S-methyltransferase
204	 59.62	0	234373..234897	-	174	75674403	-	Nwi_0204	-	hypothetical protein
205	 65.88	0	235058..235816	+	252	75674404	-	Nwi_0205	-	endonuclease III/Nth
206	 62.44	0	236083..237786	-	567	75674405	rpsA	Nwi_0206	-	30S ribosomal protein S1
207	 62.57	0	238140..238847	-	235	75674406	-	Nwi_0207	-	methyltransferase FkbM
208	 68.08	+1	238874..239512	-	212	75674407	-	Nwi_0208	-	cytidylate kinase
209	 68.07	+1	239509..240858	-	449	75674408	-	Nwi_0209	-	3-phosphoshikimate 1-carboxyvinyltransferase
210	 63.53	0	241005..241418	+	137	75674409	-	Nwi_0210	-	hypothetical protein
211	 60.56	0	242018..242443	+	141	75674410	-	Nwi_0211	-	heat shock protein Hsp20
212	 63.67	0	242542..242808	+	88	75674411	-	Nwi_0212	-	hypothetical protein
213	 65.47	0	243124..244968	+	614	75674412	-	Nwi_0213	-	dihydroxy-acid dehydratase
214	 63.24	0	245200..245520	+	106	75674413	-	Nwi_0214	-	transposase
215	 61.84	0	245675..245902	+	75	75674414	-	Nwi_0215	-	IS4 family transposase
216	 61.49	0	245916..246959	-	347	75674415	-	Nwi_0216	-	tryptophanyl-tRNA synthetase
217	 68.10	+1	247059..248660	-	533	75674416	-	Nwi_0217	-	virulence factor MVIN-like
218	 65.47	0	248739..249740	+	333	75674417	-	Nwi_0218	-	PfkB
219	 65.58	0	249826..250746	-	306	75674418	-	Nwi_0219	-	pirin
220	 63.09	0	250980..251510	-	176	75674419	-	Nwi_0220	-	hypothetical protein
221	 65.97	0	251695..253122	-	475	75674420	-	Nwi_0221	-	peptidase U62, modulator of DNA gyrase
222	 64.63	0	253282..253869	-	195	75674421	-	Nwi_0222	-	invasion associated locus B
223	 59.32	0	254299..255156	+	285	75674422	-	Nwi_0223	-	cytochrome c oxidase, subunit II
224	 61.67	0	255257..256876	+	539	75674423	-	Nwi_0224	-	cytochrome c oxidase, subunit I
225	 67.31	+1	256939..257877	+	312	75674424	-	Nwi_0225	-	protoheme IX farnesyltransferase
226	 64.91	0	257894..258064	+	56	75674425	-	Nwi_0226	-	CoxF protein
227	 66.36	+1	258071..258712	+	213	75674426	-	Nwi_0227	-	cytochrome C oxidase assembly protein
228	 64.21	0	258809..259663	+	284	75674427	-	Nwi_0228	-	cytochrome c oxidase, subunit III
229	 63.64	0	259851..261269	+	472	75674428	-	Nwi_0229	-	threonine synthase
230	 63.41	0	261266..262555	+	429	75674429	-	Nwi_0230	-	peptidase M16
231	 63.59	0	262732..263316	+	194	75674430	-	Nwi_0231	-	GCN5-related N-acetyltransferase
232	 59.50	0	263471..264112	-	213	75674431	-	Nwi_0232	-	ISRm2011-2 transposase protein
233	 60.68	0	264064..264414	-	116	75674432	-	Nwi_0233	-	transposase
234	 64.14	0	264612..265322	+	236	75674433	-	Nwi_0234	-	hypothetical protein
235	 64.40	0	265711..266196	-	161	75674434	-	Nwi_0235	-	H+-transporting two-sector ATPase, B/B' subunit
236	 65.41	0	266205..266762	-	185	75674435	-	Nwi_0236	-	H+-transporting two-sector ATPase, B/B' subunit
237	 61.40	0	266826..267053	-	75	75674436	-	Nwi_0237	-	F0F1 ATP synthase subunit C
238	 58.87	0	267106..267849	-	247	75674437	-	Nwi_0238	-	F0F1 ATP synthase subunit A
239	 64.32	0	267918..268301	-	127	75674438	-	Nwi_0239	-	FoF1 ATP synthase, subunit I
240	 65.19	0	268849..269391	+	180	75674439	-	Nwi_0240	-	hypothetical protein
241	 60.22	0	269923..270573	+	216	75674440	-	Nwi_0241	-	LuxR family transcriptional regulator
242	 63.17	0	270746..271975	-	409	75674441	-	Nwi_0242	-	5-aminolevulinate synthase
243	 63.06	0	272227..273252	-	341	75674442	-	Nwi_0243	-	biotin synthase
244	 62.81	0	273509..274234	-	241	75674443	-	Nwi_0244	-	outer membrane protein
245	 61.79	0	274793..275038	+	81	75674444	-	Nwi_0245	-	hypothetical protein
246	 65.50	0	275304..276593	+	429	75674445	-	Nwi_0246	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
247	 68.16	+1	276758..278092	+	444	75674446	hisD	Nwi_0247	-	histidinol dehydrogenase
248	 60.91	0	278394..278897	+	167	75674447	-	Nwi_0248	-	hypothetical protein
249	 63.94	0	278940..279452	+	170	75674448	-	Nwi_0249	-	low molecular weight phosphotyrosine protein phosphatase
250	 55.04	-2	280460..282085	+	541	75674449	-	Nwi_0251	-	helicase
251	 61.90	0	282177..282827	-	216	75674450	-	Nwi_0252	-	LysR family transcriptional regulator
252	 54.56	-2	282940..283542	-	200	75674451	-	Nwi_0253	-	ferric siderophore receptor protein
253	 61.49	0	283688..286045	-	785	75674452	-	Nwi_0254	-	helix-turn-helix, Fis-type
254	 63.00	0	286133..287032	-	299	75674453	-	Nwi_0255	-	antirestriction protein
255	 63.43	0	287301..287795	+	164	75674454	-	Nwi_0256	-	hypothetical protein
256	 58.60	-1	287999..289213	+	404	75674455	-	Nwi_0257	-	hypothetical protein
257	 57.73	-1	289260..290468	-	402	75674456	-	Nwi_0258	-	hypothetical protein
258	 59.30	0	290585..291466	-	293	75674457	-	Nwi_0259	-	hypothetical protein
259	 61.30	0	291472..292905	-	477	75674458	-	Nwi_0260	-	hypothetical protein
260	 62.87	0	292902..293717	-	271	75674459	-	Nwi_0261	-	hypothetical protein
261	 64.79	0	293714..294514	-	266	75674460	-	Nwi_0262	-	hypothetical protein
262	 67.20	+1	294625..295182	+	185	75674461	-	Nwi_0263	-	hypothetical protein
263	 63.28	0	295179..296537	+	452	75674462	-	Nwi_0264	-	hypothetical protein
264	 61.85	0	296516..297718	+	400	75674463	-	Nwi_0265	-	XRE family transcriptional regulator
265	 57.93	-1	297693..298310	+	205	75674464	-	Nwi_0266	-	hypothetical protein
266	 57.50	-1	298560..301178	-	872	75674465	-	Nwi_0267	-	hypothetical protein
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.