IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2011	 62.87	0	2210944..2212311	-	455	75676210	engA	Nwi_2020	-	GTP-binding protein EngA
2012	 68.98	+1	2212425..2212943	-	172	75676211	-	Nwi_2021	-	hypothetical protein
2013	 63.15	0	2212983..2213636	-	217	75676212	-	Nwi_2022	-	hypothetical protein
2014	 61.80	0	2214009..2215817	-	602	75676213	-	Nwi_2023	-	hypothetical protein
2015	 65.21	0	2216093..2216917	-	274	75676214	panB	Nwi_2024	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2016	 61.93	0	2216919..2217488	-	189	75676215	-	Nwi_2025	-	NnrU
2017	 68.22	+1	2217673..2217993	+	106	75676216	-	Nwi_2026	-	hypothetical protein
2018	 63.40	0	2218049..2219668	-	539	75676217	-	Nwi_2027	-	peptide chain release factor 3
2019	 55.72	-1	2219834..2220034	+	66	75676218	-	Nwi_2028	-	small multidrug resistance protein SugE
2020	 59.50	0	2220009..2220650	-	213	75676219	-	Nwi_2029	-	ISRm2011-2 transposase protein
2021	 60.68	0	2220602..2220952	-	116	75676220	-	Nwi_2030	-	transposase
2022	 64.38	0	2221208..2222212	-	334	75676221	-	Nwi_2031	-	phosphate transporter
2023	 59.10	0	2222227..2222874	-	215	75676222	-	Nwi_2032	-	hypothetical protein
2024	 59.02	0	2223072..2223437	-	121	75676223	-	Nwi_2033	-	hypothetical protein
2025	 65.59	0	2223472..2223936	+	154	75676224	-	Nwi_2034	-	hypothetical protein
2026	 63.27	0	2224074..2226134	+	686	75676225	thrS	Nwi_2035	-	threonyl-tRNA synthetase
2027	 61.52	0	2226414..2226977	+	187	75676226	-	Nwi_2036	-	nitroreductase
2028	 65.61	0	2227075..2227545	-	156	75676227	-	Nwi_2037	-	hypothetical protein
2029	 72.64	+2	2227696..2228499	-	267	75676228	-	Nwi_2038	-	TonB like protein
2030	 67.09	+1	2228496..2228966	-	156	75676229	-	Nwi_2039	-	biopolymer transport protein ExbD/TolR
2031	 70.70	+2	2228973..2230238	-	421	75676230	-	Nwi_2040	-	MotA/TolQ/ExbB proton channel
2032	 64.86	0	2230308..2232245	-	645	75676231	-	Nwi_2041	-	ABC transporter, ATPase subunit
2033	 67.55	+1	2232242..2233486	-	414	75676232	-	Nwi_2042	-	secretion protein HlyD
2034	 62.08	0	2233491..2233817	-	108	75676233	-	Nwi_2043	-	hypothetical protein
2035	 66.67	+1	2233814..2234344	-	176	75676234	-	Nwi_2044	-	hypothetical protein
2036	 65.07	0	2234669..2235043	+	124	75676235	-	Nwi_2046	-	transposase IS3/IS911
2037	 61.98	0	2235040..2236020	+	326	75676236	-	Nwi_2047	-	helix-turn-helix, Fis-type
2038	 60.81	0	2235965..2236459	-	164	75676237	-	Nwi_2048	-	fec I like protein
2039	 60.39	0	2236618..2239119	-	833	75676238	-	Nwi_2049	-	TonB-dependent siderophore receptor
2040	 68.08	+1	2239519..2240508	-	329	75676239	-	Nwi_2050	-	FecR, iron siderophore sensor protein
2041	 65.35	0	2240573..2241103	-	176	75676240	-	Nwi_2051	-	fec I like protein
2042	 62.76	0	2241358..2241843	-	161	75676241	-	Nwi_2052	-	hypothetical protein
2043	 62.65	0	2241933..2242703	-	256	75676242	-	Nwi_2053	-	TonB like protein
2044	 57.25	-1	2243522..2243935	-	137	75676243	-	Nwi_2054	-	hypothetical protein
2045	 65.28	0	2244551..2245201	-	216	75676244	-	Nwi_2055	-	hypothetical protein
2046	 58.37	-1	2245427..2246101	-	224	75676245	-	Nwi_2056	-	hypothetical protein
2047	 59.14	0	2246844..2247122	+	92	75676246	-	Nwi_2057	-	hypothetical protein
2048	 52.85	-2	2247186..2247518	+	110	75676247	-	Nwi_2058	-	hypothetical protein
2049	 60.68	0	2247625..2247975	+	116	75676248	-	Nwi_2059	-	transposase
2050	 59.35	0	2247927..2248568	+	213	75676249	-	Nwi_2060	-	ISRm2011-2 transposase protein
2051	 57.02	-1	2249925..2250650	+	241	75676250	-	Nwi_2061	-	Crp family transcriptional regulator
2052	 66.90	+1	2251111..2251962	+	283	75676251	-	Nwi_2062	-	RNA methyltransferase TrmH, group 3
2053	 62.75	0	2252021..2252581	-	186	75676252	-	Nwi_2063	-	hypothetical protein
2054	 65.10	0	2252625..2253071	-	148	75676253	-	Nwi_2064	-	hypothetical protein
2055	 60.86	0	2254215..2255954	-	579	75676254	-	Nwi_2065	-	sulfate transporter/antisigma-factor antagonist STAS
2056	 62.47	0	2256324..2256776	-	150	75676255	-	Nwi_2066	-	hypothetical protein
2057	 62.29	0	2256915..2258285	+	456	75676256	-	Nwi_2067	-	putative L-sorbosone dehydrogenase (SNDH)
2058	 60.41	0	2258767..2262411	-	1214	75676257	-	Nwi_2068	-	nitrate reductase, alpha subunit
2059	 68.72	+1	2263467..2266580	+	1037	75676258	-	Nwi_2069	-	hypothetical protein
2060	 52.33	-2	2266953..2267210	+	85	75676259	-	Nwi_2070	-	hypothetical protein
2061	 59.56	0	2267916..2268998	+	360	75676260	-	Nwi_2071	-	luciferase-like protein
2062	 56.67	-1	2269061..2271421	-	786	75676261	-	Nwi_2072	-	TonB-dependent receptor
2063	 61.43	0	2271751..2272782	+	343	75676262	-	Nwi_2073	-	periplasmic binding protein
2064	 61.97	0	2272789..2273619	-	276	75676263	-	Nwi_2074	-	ABC transporter, ATPase subunit
2065	 60.88	0	2273616..2274617	-	333	75676264	-	Nwi_2075	-	ABC-type Fe3+-siderophore transport system permease component
2066	 56.05	-1	2275009..2276610	-	533	75676265	-	Nwi_2076	-	TonB-dependent receptor
2067	 62.46	0	2276719..2277789	+	356	75676266	-	Nwi_2077	-	IstB-like ATP-binding protein
2068	 65.09	0	2278420..2278800	+	126	75676267	-	Nwi_2078	-	XRE family transcriptional regulator
2069	 61.80	0	2278800..2280032	+	410	75676268	-	Nwi_2079	-	hypothetical protein
2070	 65.07	0	2280841..2281215	+	124	75676269	-	Nwi_2081	-	transposase IS3/IS911
2071	 61.98	0	2281212..2282192	+	326	75676270	-	Nwi_2082	-	helix-turn-helix, Fis-type
2072	 53.33	-2	2282434..2282958	+	174	75676271	-	Nwi_2083	-	hypothetical protein
2073	 53.43	-2	2283062..2283469	+	135	75676272	-	Nwi_2084	-	divergent AAA region
2074	 58.75	-1	2283584..2284480	+	298	75676273	-	Nwi_2085	-	hypothetical protein
2075	 52.94	-2	2284473..2284727	+	84	75676274	-	Nwi_2086	-	hypothetical protein
2076	 52.28	-2	2284729..2285298	+	189	75676275	-	Nwi_2087	-	hypothetical protein
2077	 62.54	0	2285291..2287834	-	847	75676276	-	Nwi_2088	-	hypothetical protein
2078	 62.71	0	2287887..2288897	-	336	75676277	-	Nwi_2089	-	AAA ATPase
2079	 62.45	0	2289103..2289339	-	78	75676278	-	Nwi_2090	-	hypothetical protein
2080	 67.00	+1	2289336..2290544	-	402	75676279	-	Nwi_2091	-	conjugation TrbI-like protein
2081	 64.41	0	2290544..2291563	-	339	75676280	-	Nwi_2092	-	conjugal transfer protein TrbG/VirB9/CagX
2082	 64.48	0	2291563..2292249	-	228	75676281	-	Nwi_2093	-	conjugal transfer protein
2083	 65.86	0	2292318..2293562	-	414	75676282	-	Nwi_2094	-	TrbL/VirB6 plasmid conjugal transfer protein
2084	 67.79	+1	2293559..2293825	-	88	75676283	-	Nwi_2095	-	hypothetical protein
2085	 63.20	0	2293836..2294585	-	249	75676284	-	Nwi_2096	-	conjugal transfer protein TrbJ
2086	 64.12	0	2294582..2295052	-	156	75676285	-	Nwi_2097	-	type IV secretion system protein VirB4
2087	 65.26	0	2295082..2296287	-	401	75676286	-	Nwi_2098	-	conjugal transfer protein trbE
2088	 61.98	0	2296440..2297420	-	326	75676287	-	Nwi_2099	-	helix-turn-helix, Fis-type
2089	 65.07	0	2297417..2297791	-	124	75676288	-	Nwi_2100	-	transposase IS3/IS911
2090	 60.68	0	2300514..2300864	+	116	75676289	-	Nwi_2103	-	transposase
2091	 59.50	0	2300816..2301457	+	213	75676290	-	Nwi_2104	-	ISRm2011-2 transposase protein
2092	 56.89	-1	2301607..2302056	-	149	75676291	-	Nwi_2105	-	integrase
2093	 58.85	0	2302049..2302867	-	272	75676292	-	Nwi_2106	-	integrase
2094	 60.40	0	2302978..2303328	+	116	75676293	-	Nwi_2107	-	transposase
2095	 58.33	-1	2303280..2303963	+	227	75676294	-	Nwi_2108	-	transposase for insertion sequence element ISRM11/ISRM2011-2
2096	 60.54	0	2304572..2305747	+	391	75676295	-	Nwi_2109	-	filamentation induced by cAMP protein Fic
2097	 62.46	0	2305885..2306217	+	110	75676296	-	Nwi_2110	-	hypothetical protein
2098	 61.55	0	2306249..2308474	-	741	75676297	-	Nwi_2111	-	amylo-alpha-1,6-glucosidase
2099	 60.56	0	2308486..2309583	-	365	75676298	-	Nwi_2112	-	glycosyl transferase, group 1
2100	 63.17	0	2309728..2311356	-	542	75676299	groEL	Nwi_2113	-	chaperonin GroEL
2101	 60.63	0	2311406..2311720	-	104	75676300	groES	Nwi_2114	-	co-chaperonin GroES
2102	 62.61	0	2312054..2312398	+	114	75676301	-	Nwi_2115	-	hypothetical protein
2103	 58.02	-1	2312433..2312594	+	53	75676302	-	Nwi_2116	-	hypothetical protein
2104	 61.72	0	2313173..2313637	+	154	75676303	-	Nwi_2117	-	heat shock protein Hsp20
2105	 60.48	0	2313720..2314220	+	166	75676304	-	Nwi_2118	-	heat shock protein Hsp20
2106	 64.24	0	2314320..2314649	+	109	75676305	-	Nwi_2119	-	transposase IS3/IS911
2107	 65.23	0	2314646..2315551	+	301	75676306	-	Nwi_2120	-	integrase, catalytic region
2108	 67.09	+1	2315712..2316665	+	317	75676307	-	Nwi_2121	-	antirestriction protein; ArdC
2109	 65.86	0	2316662..2317033	+	123	75676308	-	Nwi_2122	-	hypothetical protein
2110	 67.73	+1	2317208..2319361	+	717	75676309	-	Nwi_2123	-	hypothetical protein
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.