IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1956	 61.88	0	2153913..2154893	-	326	75676155	-	Nwi_1964	-	helix-turn-helix, Fis-type
1957	 65.07	0	2154890..2155264	-	124	75676156	-	Nwi_1965	-	transposase IS3/IS911
1958	 61.73	0	2156085..2156246	+	53	75676157	-	Nwi_1966	-	RNA polymerase ECF-type sigma factor, FecI
1959	 60.68	0	2156346..2156696	+	116	75676158	-	Nwi_1967	-	transposase
1960	 59.50	0	2156648..2157289	+	213	75676159	-	Nwi_1968	-	ISRm2011-2 transposase protein
1961	 63.32	0	2157520..2158653	+	377	75676160	-	Nwi_1969	-	FecR protein
1962	 62.61	0	2159373..2159816	-	147	75676161	-	Nwi_1971	-	hypothetical protein
1963	 56.71	-1	2160367..2160798	+	143	75676162	-	Nwi_1972	-	hypothetical protein
1964	 64.61	0	2160930..2161757	-	275	75676163	-	Nwi_1973	-	hypothetical protein
1965	 62.88	0	2161763..2162395	-	210	75676164	-	Nwi_1974	-	hypothetical protein
1966	 62.94	0	2162409..2164769	-	786	75676165	-	Nwi_1975	-	nitric oxide reductase activation protein
1967	 63.53	0	2164862..2165785	-	307	75676166	-	Nwi_1976	-	ATPase
1968	 65.79	0	2165806..2166033	-	75	75676167	-	Nwi_1977	-	hypothetical protein
1969	 66.98	+1	2166030..2166665	-	211	75676168	-	Nwi_1978	-	cobyrinic acid a,c-diamide synthase
1970	 61.80	0	2166669..2166935	-	88	75676169	-	Nwi_1979	-	hypothetical protein
1971	 69.30	+1	2167218..2167559	-	113	75676170	-	Nwi_1980	-	carboxysome structural peptide CsoS1B
1972	 68.35	+1	2167601..2167897	-	98	75676171	-	Nwi_1981	-	carboxysome structural polypeptide
1973	 64.31	0	2167991..2168245	-	84	75676172	-	Nwi_1982	-	ethanolamine utilization protein EutN/carboxysome structural protein Ccml
1974	 62.40	0	2168242..2168499	-	85	75676173	-	Nwi_1983	-	ethanolamine utilization protein EutN/carboxysome structural protein Ccml
1975	 64.90	0	2168513..2170039	-	508	75676174	-	Nwi_1984	-	carboxysome shell polypeptide, CsoS3
1976	 69.03	+1	2170051..2172753	-	900	75676175	-	Nwi_1985	-	carboxysome shell protein CsoS2
1977	 60.86	0	2172859..2173185	-	108	75676176	-	Nwi_1986	-	ribulose bisphosphate carboxylase, small chain
1978	 62.59	0	2173260..2174681	-	473	75676177	rbcL	Nwi_1987	-	ribulose bisophosphate carboxylase
1979	 62.39	0	2174913..2175848	+	311	75676178	-	Nwi_1988	-	LysR family transcriptional regulator
1980	 55.96	-1	2175838..2176164	-	108	75676179	-	Nwi_1989	-	hypothetical protein
1981	 68.72	+1	2176161..2179274	-	1037	75676180	-	Nwi_1990	-	hypothetical protein
1982	 66.53	+1	2179259..2180017	-	252	75676181	-	Nwi_1991	-	hypothetical protein
1983	 62.96	0	2180023..2181723	-	566	75676182	-	Nwi_1992	-	NADH/ubiquinone/plastoquinone (complex I)
1984	 60.54	0	2181935..2182228	+	97	75676183	-	Nwi_1993	-	hypothetical protein
1985	 55.07	-2	2182328..2182603	+	91	75676184	-	Nwi_1994	-	hypothetical protein
1986	 64.42	0	2182829..2183095	-	88	75676185	-	Nwi_1995	-	hypothetical protein
1987	 52.45	-2	2184036..2184239	-	67	75676186	-	Nwi_1996	-	hypothetical protein
1988	 62.96	0	2184822..2186306	-	494	75676187	gatB	Nwi_1997	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1989	 64.93	0	2186375..2187754	-	459	75676188	-	Nwi_1998	-	patatin
1990	 60.39	0	2187953..2188669	-	238	75676189	-	Nwi_1999	-	ISRm2011-2 transposase protein
1991	 65.68	0	2189084..2189386	-	100	75676190	-	Nwi_2000	-	hypothetical protein
1992	 64.97	0	2189383..2190858	-	491	75676191	gatA	Nwi_2001	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1993	 61.35	0	2190855..2191061	-	68	75676192	-	Nwi_2002	-	hypothetical protein
1994	 58.68	-1	2191076..2191363	-	95	75676193	gatC	Nwi_2003	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1995	 68.29	+1	2191626..2192117	+	163	75676194	-	Nwi_2004	-	Holliday junction resolvase YqgF
1996	 62.48	0	2192118..2192906	-	262	75676195	-	Nwi_2005	-	abortive infection protein
1997	 66.91	+1	2193042..2194682	-	546	75676196	-	Nwi_2006	-	acyl-CoA dehydrogenase
1998	 63.82	0	2194720..2195808	+	362	75676197	pyrB	Nwi_2007	-	aspartate carbamoyltransferase catalytic subunit
1999	 66.74	+1	2195887..2197188	+	433	75676198	-	Nwi_2008	-	dihydroorotase
2000	 62.77	0	2197441..2198031	+	196	75676199	-	Nwi_2009	-	putative glycerol-3-phosphate acyltransferase PlsY
2001	 68.19	+1	2198062..2199180	+	372	75676200	-	Nwi_2010	-	SMF protein
2002	 66.04	0	2199310..2200587	-	425	75676201	-	Nwi_2011	-	hypothetical protein
2003	 59.68	0	2200927..2202171	+	414	75676202	-	Nwi_2012	-	cyclopropane-fatty-acyl-phospholipid synthase
2004	 62.51	0	2202451..2203941	+	496	75676203	-	Nwi_2013	-	replicative DNA helicase
2005	 65.49	0	2204009..2205196	+	395	75676204	-	Nwi_2014	-	alanine racemase region
2006	 66.67	+1	2205207..2206667	+	486	75676205	-	Nwi_2015	-	DNA repair protein RadA
2007	 58.77	-1	2206872..2207504	+	210	75676206	-	Nwi_2016	-	colicin V production protein
2008	 63.04	0	2207564..2209078	+	504	75676207	-	Nwi_2017	-	amidophosphoribosyltransferase
2009	 66.85	+1	2209107..2209640	-	177	75676208	-	Nwi_2018	-	GCN5-related N-acetyltransferase
2010	 65.60	0	2209690..2210442	+	250	75676209	-	Nwi_2019	-	short-chain dehydrogenase/reductase SDR
2011	 62.87	0	2210944..2212311	-	455	75676210	engA	Nwi_2020	-	GTP-binding protein EngA
2012	 68.98	+1	2212425..2212943	-	172	75676211	-	Nwi_2021	-	hypothetical protein
2013	 63.15	0	2212983..2213636	-	217	75676212	-	Nwi_2022	-	hypothetical protein
2014	 61.80	0	2214009..2215817	-	602	75676213	-	Nwi_2023	-	hypothetical protein
2015	 65.21	0	2216093..2216917	-	274	75676214	panB	Nwi_2024	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2016	 61.93	0	2216919..2217488	-	189	75676215	-	Nwi_2025	-	NnrU
2017	 68.22	+1	2217673..2217993	+	106	75676216	-	Nwi_2026	-	hypothetical protein
2018	 63.40	0	2218049..2219668	-	539	75676217	-	Nwi_2027	-	peptide chain release factor 3
2019	 55.72	-1	2219834..2220034	+	66	75676218	-	Nwi_2028	-	small multidrug resistance protein SugE
2020	 59.50	0	2220009..2220650	-	213	75676219	-	Nwi_2029	-	ISRm2011-2 transposase protein
2021	 60.68	0	2220602..2220952	-	116	75676220	-	Nwi_2030	-	transposase
2022	 64.38	0	2221208..2222212	-	334	75676221	-	Nwi_2031	-	phosphate transporter
2023	 59.10	0	2222227..2222874	-	215	75676222	-	Nwi_2032	-	hypothetical protein
2024	 59.02	0	2223072..2223437	-	121	75676223	-	Nwi_2033	-	hypothetical protein
2025	 65.59	0	2223472..2223936	+	154	75676224	-	Nwi_2034	-	hypothetical protein
2026	 63.27	0	2224074..2226134	+	686	75676225	thrS	Nwi_2035	-	threonyl-tRNA synthetase
2027	 61.52	0	2226414..2226977	+	187	75676226	-	Nwi_2036	-	nitroreductase
2028	 65.61	0	2227075..2227545	-	156	75676227	-	Nwi_2037	-	hypothetical protein
2029	 72.64	+2	2227696..2228499	-	267	75676228	-	Nwi_2038	-	TonB like protein
2030	 67.09	+1	2228496..2228966	-	156	75676229	-	Nwi_2039	-	biopolymer transport protein ExbD/TolR
2031	 70.70	+2	2228973..2230238	-	421	75676230	-	Nwi_2040	-	MotA/TolQ/ExbB proton channel
2032	 64.86	0	2230308..2232245	-	645	75676231	-	Nwi_2041	-	ABC transporter, ATPase subunit
2033	 67.55	+1	2232242..2233486	-	414	75676232	-	Nwi_2042	-	secretion protein HlyD
2034	 62.08	0	2233491..2233817	-	108	75676233	-	Nwi_2043	-	hypothetical protein
2035	 66.67	+1	2233814..2234344	-	176	75676234	-	Nwi_2044	-	hypothetical protein
2036	 65.07	0	2234669..2235043	+	124	75676235	-	Nwi_2046	-	transposase IS3/IS911
2037	 61.98	0	2235040..2236020	+	326	75676236	-	Nwi_2047	-	helix-turn-helix, Fis-type
2038	 60.81	0	2235965..2236459	-	164	75676237	-	Nwi_2048	-	fec I like protein
2039	 60.39	0	2236618..2239119	-	833	75676238	-	Nwi_2049	-	TonB-dependent siderophore receptor
2040	 68.08	+1	2239519..2240508	-	329	75676239	-	Nwi_2050	-	FecR, iron siderophore sensor protein
2041	 65.35	0	2240573..2241103	-	176	75676240	-	Nwi_2051	-	fec I like protein
2042	 62.76	0	2241358..2241843	-	161	75676241	-	Nwi_2052	-	hypothetical protein
2043	 62.65	0	2241933..2242703	-	256	75676242	-	Nwi_2053	-	TonB like protein
2044	 57.25	-1	2243522..2243935	-	137	75676243	-	Nwi_2054	-	hypothetical protein
2045	 65.28	0	2244551..2245201	-	216	75676244	-	Nwi_2055	-	hypothetical protein
2046	 58.37	-1	2245427..2246101	-	224	75676245	-	Nwi_2056	-	hypothetical protein
2047	 59.14	0	2246844..2247122	+	92	75676246	-	Nwi_2057	-	hypothetical protein
2048	 52.85	-2	2247186..2247518	+	110	75676247	-	Nwi_2058	-	hypothetical protein
2049	 60.68	0	2247625..2247975	+	116	75676248	-	Nwi_2059	-	transposase
2050	 59.35	0	2247927..2248568	+	213	75676249	-	Nwi_2060	-	ISRm2011-2 transposase protein
2051	 57.02	-1	2249925..2250650	+	241	75676250	-	Nwi_2061	-	Crp family transcriptional regulator
2052	 66.90	+1	2251111..2251962	+	283	75676251	-	Nwi_2062	-	RNA methyltransferase TrmH, group 3
2053	 62.75	0	2252021..2252581	-	186	75676252	-	Nwi_2063	-	hypothetical protein
2054	 65.10	0	2252625..2253071	-	148	75676253	-	Nwi_2064	-	hypothetical protein
2055	 60.86	0	2254215..2255954	-	579	75676254	-	Nwi_2065	-	sulfate transporter/antisigma-factor antagonist STAS
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.