IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1860	 61.54	0	2049739..2051943	-	734	75676059	-	Nwi_1868	-	TonB-dependent receptor
1861	 63.93	0	2052040..2052405	-	121	75676060	-	Nwi_1869	-	hypothetical protein
1862	 55.80	-1	2052624..2052899	-	91	75676061	-	Nwi_1870	-	hypothetical protein
1863	 57.78	-1	2052899..2053303	-	134	75676062	-	Nwi_1871	-	glyoxalase/bleomycin resistance protein/dioxygenase
1864	 63.68	0	2053470..2055143	-	557	75676063	-	Nwi_1872	-	metallo-beta-lactamase superfamily hydrolase
1865	 66.30	+1	2055140..2055952	-	270	75676064	-	Nwi_1873	-	biotin--protein ligase
1866	 61.66	0	2055966..2057402	-	478	75676065	-	Nwi_1874	-	NADH dehydrogenase subunit N
1867	 59.91	0	2057425..2058933	-	502	75676066	-	Nwi_1875	-	NADH dehydrogenase subunit M
1868	 60.23	0	2058936..2061002	-	688	75676067	-	Nwi_1876	-	NADH dehydrogenase subunit L
1869	 59.55	0	2061086..2061394	-	102	75676068	-	Nwi_1877	-	NADH dehydrogenase subunit K
1870	 62.13	0	2061391..2062029	-	212	75676069	-	Nwi_1878	-	NADH dehydrogenase subunit J
1871	 61.76	0	2062039..2062527	-	162	75676070	-	Nwi_1879	-	NADH dehydrogenase subunit I
1872	 61.44	0	2062543..2063613	-	356	75676071	-	Nwi_1880	-	NADH dehydrogenase subunit H
1873	 65.94	0	2063619..2065694	-	691	75676072	-	Nwi_1881	-	NADH dehydrogenase subunit G
1874	 64.93	0	2065699..2067024	-	441	75676073	-	Nwi_1882	-	NADH dehydrogenase I subunit F
1875	 64.14	0	2067024..2067776	-	250	75676074	-	Nwi_1883	-	NADH dehydrogenase subunit E
1876	 62.11	0	2067791..2068756	-	321	75676075	-	Nwi_1884	-	methyltransferase FkbM
1877	 61.70	0	2068753..2069961	-	402	75676076	-	Nwi_1885	-	NADH dehydrogenase subunit D
1878	 63.29	0	2069961..2070581	-	206	75676077	-	Nwi_1886	-	NADH dehydrogenase subunit C
1879	 61.86	0	2070593..2071216	-	207	75676078	-	Nwi_1887	-	NADH dehydrogenase subunit B
1880	 52.73	-2	2071186..2071551	-	121	75676079	-	Nwi_1888	-	NADH dehydrogenase subunit A
1881	 58.33	-1	2071741..2072064	+	107	75676080	-	Nwi_1889	-	hypothetical protein
1882	 61.11	0	2072674..2072871	-	65	75676081	-	Nwi_1890	-	hypothetical protein
1883	 55.83	-1	2072872..2073111	-	79	75676082	-	Nwi_1891	-	hypothetical protein
1884	 62.00	0	2073631..2073930	+	99	75676083	-	Nwi_1892	-	histone-like DNA-binding protein
1885	 60.69	0	2074083..2075336	+	417	75676084	-	Nwi_1893	-	peptidase T
1886	 60.72	0	2075524..2076330	-	268	75676085	-	Nwi_1894	-	methyltransferase FkbM
1887	 59.94	0	2076388..2076699	+	103	75676086	-	Nwi_1895	-	hypothetical protein
1888	 64.45	0	2076751..2077608	-	285	75676087	-	Nwi_1896	-	UbiE/COQ5 methyltransferase
1889	 61.39	0	2078532..2080958	-	808	75676088	-	Nwi_1897	-	peptidase S16, ATP-dependent protease La
1890	 60.86	0	2081266..2082540	-	424	75676089	clpX	Nwi_1898	-	ATP-dependent protease ATP-binding subunit
1891	 59.00	0	2082966..2083604	-	212	75676090	-	Nwi_1899	-	peptidase S14, ClpP
1892	 60.65	0	2084024..2085385	-	453	75676091	tig	Nwi_1900	-	trigger factor
1893	 66.12	+1	2085946..2087223	+	425	75676092	-	Nwi_1901	-	multicopper oxidase
1894	 67.67	+1	2087241..2088740	-	499	75676093	-	Nwi_1902	-	hypothetical protein
1895	 56.34	-1	2089086..2089424	+	112	75676094	-	Nwi_1903	-	nitrogen regulatory protein P-II
1896	 59.93	0	2089515..2090924	+	469	75676095	-	Nwi_1904	-	glutamine synthetase type I
1897	 62.81	0	2091076..2092215	+	379	75676096	-	Nwi_1905	-	hypothetical protein
1898	 55.78	-1	2092212..2092514	-	100	75676097	-	Nwi_1906	-	antibiotic biosynthesis monooxygenase
1899	 60.23	0	2092830..2093342	-	170	75676098	-	Nwi_1907	-	MarR family transcriptional regulator
1900	 63.31	0	2093752..2094228	-	158	75676099	-	Nwi_1908	-	hypothetical protein
1901	 64.78	0	2094384..2095442	+	352	75676100	-	Nwi_1909	-	delta-aminolevulinic acid dehydratase
1902	 60.19	0	2095589..2096128	+	179	75676101	-	Nwi_1910	-	hypothetical protein
1903	 61.11	0	2096210..2096983	+	257	75676102	-	Nwi_1911	-	arginyl-tRNA-protein transferase
1904	 63.70	0	2097014..2098396	-	460	75676103	-	Nwi_1912	-	manganese transport protein MntH
1905	 61.90	0	2098570..2098968	-	132	75676104	-	Nwi_1913	-	arsenate reductase
1906	 63.33	0	2099085..2101334	-	749	75676105	-	Nwi_1914	-	DNA topoisomerase IV subunit A
1907	 66.54	+1	2101385..2102173	-	262	162139842	recO	Nwi_1915	-	DNA repair protein RecO
1908	 58.60	-1	2102247..2102618	-	123	75676107	-	Nwi_1916	-	hypothetical protein
1909	 62.17	0	2102633..2103544	-	303	75676108	era	Nwi_1917	-	GTP-binding protein Era
1910	 66.67	+1	2103541..2104341	-	266	75676109	-	Nwi_1918	-	ribonuclease III
1911	 59.29	0	2104338..2105096	-	252	75676110	-	Nwi_1919	-	peptidase S26A, signal peptidase I
1912	 62.14	0	2105361..2105780	-	139	75676111	acpS	Nwi_1920	-	4'-phosphopantetheinyl transferase
1913	 64.82	0	2105777..2106589	-	270	75676112	-	Nwi_1921	-	pyridoxal phosphate biosynthetic protein PdxJ
1914	 63.57	0	2106787..2109111	-	774	75676113	-	Nwi_1922	-	RelA/SpoT protein
1915	 60.31	0	2109512..2109904	-	130	75676114	-	Nwi_1923	-	DNA-directed RNA polymerase subunit omega
1916	 61.17	0	2110249..2110866	+	205	75676115	-	Nwi_1924	-	hypothetical protein
1917	 65.93	0	2110844..2111521	+	225	75676116	-	Nwi_1925	-	uracil-DNA glycosylase superfamily protein
1918	 64.81	0	2111614..2111883	-	89	75676117	-	Nwi_1926	-	hypothetical protein
1919	 58.02	-1	2111974..2112447	-	157	75676118	smpB	Nwi_1927	-	SsrA-binding protein
1920	 58.33	-1	2112512..2112931	-	139	75676119	-	Nwi_1928	-	large-conductance mechanosensitive channel
1921	 63.08	0	2113111..2114001	-	296	75676120	dapA	Nwi_1929	-	dihydrodipicolinate synthase
1922	 66.26	+1	2114362..2116569	+	735	75676121	-	Nwi_1930	-	lytic transglycosylase
1923	 65.07	0	2116944..2117318	+	124	75676122	-	Nwi_1931	-	transposase IS3/IS911
1924	 61.88	0	2117315..2118295	+	326	75676123	-	Nwi_1932	-	helix-turn-helix, Fis-type
1925	 62.40	0	2118832..2120400	-	522	75676124	-	Nwi_1933	-	putative porin
1926	 63.65	0	2122884..2123414	-	176	75676125	-	Nwi_1934	-	transposase, IS4
1927	 64.95	0	2123744..2124034	-	96	75676126	-	Nwi_1935	-	hypothetical protein
1928	 67.63	+1	2124041..2125075	-	344	75676127	-	Nwi_1936	-	hypothetical protein
1929	 69.28	+1	2125072..2125722	-	216	75676128	-	Nwi_1937	-	hypothetical protein
1930	 60.36	0	2125727..2126677	-	316	75676129	-	Nwi_1938	-	CRISPR-associated Csh2 family protein
1931	 62.40	0	2126677..2128458	-	593	75676130	-	Nwi_1939	-	CRISPR-associated Csd1 family protein
1932	 65.08	0	2128455..2129147	-	230	75676131	-	Nwi_1940	-	CRISPR-associated Csd1 family protein
1933	 61.88	0	2129211..2131445	-	744	75676132	-	Nwi_1941	-	CRISPR-associated helicase Cas3 family protein protein
1934	 60.34	0	2131536..2131946	-	136	75676133	-	Nwi_1942	-	putative bacteriophage-related protein
1935	 61.94	0	2131949..2133280	-	443	75676134	-	Nwi_1943	-	resolvase
1936	 65.07	0	2133392..2133766	+	124	75676135	-	Nwi_1944	-	transposase IS3/IS911
1937	 61.88	0	2133763..2134743	+	326	75676136	-	Nwi_1945	-	helix-turn-helix, Fis-type
1938	 62.50	0	2134850..2135137	+	95	75676137	-	Nwi_1946	-	transmembrane protein
1939	 61.26	0	2135469..2137856	+	795	75676138	-	Nwi_1947	-	putative phosphoketolase
1940	 63.79	0	2137886..2139655	-	589	75676139	-	Nwi_1948	-	acetate kinase
1941	 64.81	0	2140202..2142199	+	665	75676140	-	Nwi_1949	-	heavy metal translocating P-type ATPase
1942	 64.68	0	2142589..2142990	-	133	75676141	-	Nwi_1950	-	putative phage-related protein
1943	 65.32	0	2142987..2144324	-	445	75676142	-	Nwi_1951	-	resolvase
1944	 65.29	0	2144321..2144830	-	169	75676143	-	Nwi_1952	-	hypothetical protein
1945	 57.93	-1	2145257..2145748	-	163	75676144	-	Nwi_1953	-	putative DNA modification methylase
1946	 58.72	-1	2145846..2146877	-	343	75676145	-	Nwi_1954	-	hypothetical protein
1947	 57.57	-1	2146890..2148032	-	380	75676146	-	Nwi_1955	-	hypothetical protein
1948	 59.73	0	2148101..2148619	-	172	75676147	-	Nwi_1956	-	hypothetical protein
1949	 63.26	0	2148635..2149867	-	410	75676148	-	Nwi_1957	-	XRE family transcriptional regulator
1950	 63.13	0	2150052..2151239	+	395	75676149	-	Nwi_1958	-	hypothetical protein
1951	 60.92	0	2151223..2152161	+	312	75676150	-	Nwi_1959	-	hypothetical protein
1952	 66.19	+1	2152329..2152538	+	69	75676151	-	Nwi_1960	-	hypothetical protein
1953	 68.92	+1	2152549..2153037	+	162	75676152	-	Nwi_1961	-	hypothetical protein
1954	 69.02	+1	2153034..2153330	+	98	75676153	-	Nwi_1962	-	hypothetical protein
1955	 65.73	0	2153330..2153968	+	212	75676154	-	Nwi_1963	-	hypothetical protein
1956	 61.88	0	2153913..2154893	-	326	75676155	-	Nwi_1964	-	helix-turn-helix, Fis-type
1957	 65.07	0	2154890..2155264	-	124	75676156	-	Nwi_1965	-	transposase IS3/IS911
1958	 61.73	0	2156085..2156246	+	53	75676157	-	Nwi_1966	-	RNA polymerase ECF-type sigma factor, FecI
1959	 60.68	0	2156346..2156696	+	116	75676158	-	Nwi_1967	-	transposase
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.