IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1810	 63.59	0	1990201..1991598	-	465	75676009	-	Nwi_1817	-	pyruvate dehydrogenase subunit beta
1811	 62.20	0	1991626..1992654	-	342	75676010	-	Nwi_1818	-	dehydrogenase, E1 component
1812	 63.21	0	1992839..1993156	-	105	75676011	-	Nwi_1819	-	septum formation initiator
1813	 60.57	0	1993216..1993773	-	185	75676012	-	Nwi_1820	-	NADPH-dependent FMN reductase
1814	 62.59	0	1993835..1994422	-	195	75676013	-	Nwi_1821	-	isoprenylcysteine carboxyl methyltransferase
1815	 64.04	0	1994438..1995694	-	418	75676014	-	Nwi_1822	-	hypothetical protein
1816	 61.33	0	1995914..1996588	+	224	75676015	-	Nwi_1823	-	hypothetical protein
1817	 66.97	+1	1996753..1997727	+	324	75676016	-	Nwi_1824	-	PE_PGRS family protein
1818	 68.59	+1	1999160..1999732	+	190	75676017	-	Nwi_1826	-	outer membrane protein
1819	 63.54	0	1999831..2001111	-	426	75676018	-	Nwi_1827	-	enolase
1820	 61.84	0	2001574..2002050	+	158	75676019	-	Nwi_1828	-	7-cyano-7-deazaguanine reductase
1821	 59.00	0	2002083..2002799	-	238	75676020	-	Nwi_1829	-	hypothetical protein
1822	 65.25	0	2002899..2004095	-	398	75676021	-	Nwi_1830	-	major facilitator transporter
1823	 67.13	+1	2004092..2004955	-	287	75676022	-	Nwi_1831	-	2-dehydro-3-deoxyphosphooctonate aldolase
1824	 63.59	0	2005107..2005463	+	118	75676023	-	Nwi_1832	-	hypothetical protein
1825	 63.48	0	2005468..2007099	-	543	75676024	-	Nwi_1833	-	CTP synthetase
1826	 66.13	+1	2007266..2007640	-	124	162139843	secG	Nwi_1834	-	preprotein translocase subunit SecG
1827	 66.80	+1	2008195..2008947	-	250	75676026	-	Nwi_1835	-	triosephosphate isomerase
1828	 64.42	0	2009269..2011179	+	636	75676027	-	Nwi_1836	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1829	 67.55	+1	2011216..2012229	+	337	75676028	trpD	Nwi_1837	-	anthranilate phosphoribosyltransferase
1830	 64.28	0	2012240..2013034	+	264	75676029	-	Nwi_1838	-	indole-3-glycerol-phosphate synthase
1831	 62.55	0	2013188..2013697	+	169	75676030	moaC	Nwi_1839	-	molybdenum cofactor biosynthesis protein C
1832	 68.07	+1	2014016..2015230	+	404	75676031	-	Nwi_1840	-	molybdopterin biosynthesis protein MoeA
1833	 65.10	0	2015400..2016101	+	233	75676032	-	Nwi_1841	-	LexA repressor
1834	 66.50	+1	2016794..2019130	-	778	75676033	-	Nwi_1842	-	ComEC/Rec2-related protein
1835	 63.87	0	2019217..2020896	-	559	75676034	-	Nwi_1843	-	glutaminyl-tRNA synthetase
1836	 62.51	0	2021064..2022554	+	496	75676035	gltX	Nwi_1844	-	glutamyl-tRNA synthetase
1837	 58.14	-1	2022697..2023998	+	433	75676036	gltA	Nwi_1845	-	type II citrate synthase
1838	 64.48	0	2024022..2025212	-	396	75676037	-	Nwi_1846	-	glycosyl transferase family protein
1839	 65.74	0	2025212..2026078	-	288	75676038	-	Nwi_1847	-	hypothetical protein
1840	 62.83	0	2026089..2026895	-	268	75676039	-	Nwi_1848	-	UDP-N-acetylglucosamine acyltransferase
1841	 59.43	0	2026895..2027350	-	151	75676040	-	Nwi_1849	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1842	 64.37	0	2027370..2028458	-	362	75676041	lpxD	Nwi_1850	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1843	 59.60	0	2028491..2031022	-	843	75676042	-	Nwi_1851	-	Outer membrane protein
1844	 60.24	0	2031304..2032455	-	383	75676043	-	Nwi_1852	-	peptidase M50, putative membrane-associated zinc metallopeptidase
1845	 64.38	0	2032580..2033803	-	407	75676044	-	Nwi_1853	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1846	 63.35	0	2033807..2034649	-	280	75676045	-	Nwi_1854	-	phosphatidate cytidylyltransferase
1847	 62.71	0	2034808..2035566	-	252	75676046	-	Nwi_1855	-	di-trans-poly-cis-decaprenylcistransferase
1848	 56.91	-1	2035585..2036148	-	187	75676047	-	Nwi_1856	-	ribosome recycling factor
1849	 62.34	0	2036200..2036916	-	238	75676048	-	Nwi_1857	-	uridylate kinase
1850	 62.55	0	2036966..2037889	-	307	75676049	tsf	Nwi_1858	-	elongation factor Ts
1851	 62.26	0	2038015..2039013	-	332	75676050	rpsB	Nwi_1859	-	30S ribosomal protein S2
1852	 63.47	0	2039205..2042711	-	1168	75676051	dnaE	Nwi_1860	-	DNA polymerase III subunit alpha
1853	 57.19	-1	2043264..2043548	-	94	75676052	-	Nwi_1861	-	hypothetical protein
1854	 60.30	0	2043612..2044334	-	240	75676053	-	Nwi_1862	-	orotidine 5'-phosphate decarboxylase
1855	 59.94	0	2044863..2045561	-	232	75676054	-	Nwi_1863	-	ABC transporter, ATPase subunit
1856	 61.90	0	2045570..2046850	-	426	75676055	-	Nwi_1864	-	LolC/E family lipoprotein releasing system, transmembrane protein
1857	 61.59	0	2046923..2048242	-	439	75676056	-	Nwi_1865	-	prolyl-tRNA synthetase
1858	 65.73	0	2048647..2049177	-	176	75676057	-	Nwi_1866	-	nuclear export factor GLE1
1859	 61.27	0	2049174..2049710	-	178	75676058	-	Nwi_1867	-	hypothetical protein
1860	 61.54	0	2049739..2051943	-	734	75676059	-	Nwi_1868	-	TonB-dependent receptor
1861	 63.93	0	2052040..2052405	-	121	75676060	-	Nwi_1869	-	hypothetical protein
1862	 55.80	-1	2052624..2052899	-	91	75676061	-	Nwi_1870	-	hypothetical protein
1863	 57.78	-1	2052899..2053303	-	134	75676062	-	Nwi_1871	-	glyoxalase/bleomycin resistance protein/dioxygenase
1864	 63.68	0	2053470..2055143	-	557	75676063	-	Nwi_1872	-	metallo-beta-lactamase superfamily hydrolase
1865	 66.30	+1	2055140..2055952	-	270	75676064	-	Nwi_1873	-	biotin--protein ligase
1866	 61.66	0	2055966..2057402	-	478	75676065	-	Nwi_1874	-	NADH dehydrogenase subunit N
1867	 59.91	0	2057425..2058933	-	502	75676066	-	Nwi_1875	-	NADH dehydrogenase subunit M
1868	 60.23	0	2058936..2061002	-	688	75676067	-	Nwi_1876	-	NADH dehydrogenase subunit L
1869	 59.55	0	2061086..2061394	-	102	75676068	-	Nwi_1877	-	NADH dehydrogenase subunit K
1870	 62.13	0	2061391..2062029	-	212	75676069	-	Nwi_1878	-	NADH dehydrogenase subunit J
1871	 61.76	0	2062039..2062527	-	162	75676070	-	Nwi_1879	-	NADH dehydrogenase subunit I
1872	 61.44	0	2062543..2063613	-	356	75676071	-	Nwi_1880	-	NADH dehydrogenase subunit H
1873	 65.94	0	2063619..2065694	-	691	75676072	-	Nwi_1881	-	NADH dehydrogenase subunit G
1874	 64.93	0	2065699..2067024	-	441	75676073	-	Nwi_1882	-	NADH dehydrogenase I subunit F
1875	 64.14	0	2067024..2067776	-	250	75676074	-	Nwi_1883	-	NADH dehydrogenase subunit E
1876	 62.11	0	2067791..2068756	-	321	75676075	-	Nwi_1884	-	methyltransferase FkbM
1877	 61.70	0	2068753..2069961	-	402	75676076	-	Nwi_1885	-	NADH dehydrogenase subunit D
1878	 63.29	0	2069961..2070581	-	206	75676077	-	Nwi_1886	-	NADH dehydrogenase subunit C
1879	 61.86	0	2070593..2071216	-	207	75676078	-	Nwi_1887	-	NADH dehydrogenase subunit B
1880	 52.73	-2	2071186..2071551	-	121	75676079	-	Nwi_1888	-	NADH dehydrogenase subunit A
1881	 58.33	-1	2071741..2072064	+	107	75676080	-	Nwi_1889	-	hypothetical protein
1882	 61.11	0	2072674..2072871	-	65	75676081	-	Nwi_1890	-	hypothetical protein
1883	 55.83	-1	2072872..2073111	-	79	75676082	-	Nwi_1891	-	hypothetical protein
1884	 62.00	0	2073631..2073930	+	99	75676083	-	Nwi_1892	-	histone-like DNA-binding protein
1885	 60.69	0	2074083..2075336	+	417	75676084	-	Nwi_1893	-	peptidase T
1886	 60.72	0	2075524..2076330	-	268	75676085	-	Nwi_1894	-	methyltransferase FkbM
1887	 59.94	0	2076388..2076699	+	103	75676086	-	Nwi_1895	-	hypothetical protein
1888	 64.45	0	2076751..2077608	-	285	75676087	-	Nwi_1896	-	UbiE/COQ5 methyltransferase
1889	 61.39	0	2078532..2080958	-	808	75676088	-	Nwi_1897	-	peptidase S16, ATP-dependent protease La
1890	 60.86	0	2081266..2082540	-	424	75676089	clpX	Nwi_1898	-	ATP-dependent protease ATP-binding subunit
1891	 59.00	0	2082966..2083604	-	212	75676090	-	Nwi_1899	-	peptidase S14, ClpP
1892	 60.65	0	2084024..2085385	-	453	75676091	tig	Nwi_1900	-	trigger factor
1893	 66.12	+1	2085946..2087223	+	425	75676092	-	Nwi_1901	-	multicopper oxidase
1894	 67.67	+1	2087241..2088740	-	499	75676093	-	Nwi_1902	-	hypothetical protein
1895	 56.34	-1	2089086..2089424	+	112	75676094	-	Nwi_1903	-	nitrogen regulatory protein P-II
1896	 59.93	0	2089515..2090924	+	469	75676095	-	Nwi_1904	-	glutamine synthetase type I
1897	 62.81	0	2091076..2092215	+	379	75676096	-	Nwi_1905	-	hypothetical protein
1898	 55.78	-1	2092212..2092514	-	100	75676097	-	Nwi_1906	-	antibiotic biosynthesis monooxygenase
1899	 60.23	0	2092830..2093342	-	170	75676098	-	Nwi_1907	-	MarR family transcriptional regulator
1900	 63.31	0	2093752..2094228	-	158	75676099	-	Nwi_1908	-	hypothetical protein
1901	 64.78	0	2094384..2095442	+	352	75676100	-	Nwi_1909	-	delta-aminolevulinic acid dehydratase
1902	 60.19	0	2095589..2096128	+	179	75676101	-	Nwi_1910	-	hypothetical protein
1903	 61.11	0	2096210..2096983	+	257	75676102	-	Nwi_1911	-	arginyl-tRNA-protein transferase
1904	 63.70	0	2097014..2098396	-	460	75676103	-	Nwi_1912	-	manganese transport protein MntH
1905	 61.90	0	2098570..2098968	-	132	75676104	-	Nwi_1913	-	arsenate reductase
1906	 63.33	0	2099085..2101334	-	749	75676105	-	Nwi_1914	-	DNA topoisomerase IV subunit A
1907	 66.54	+1	2101385..2102173	-	262	162139842	recO	Nwi_1915	-	DNA repair protein RecO
1908	 58.60	-1	2102247..2102618	-	123	75676107	-	Nwi_1916	-	hypothetical protein
1909	 62.17	0	2102633..2103544	-	303	75676108	era	Nwi_1917	-	GTP-binding protein Era
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.