IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1768	 63.93	0	1945414..1946181	-	255	75675967	surE	Nwi_1775	-	stationary phase survival protein SurE
1769	 59.84	0	1946505..1947998	-	497	75675968	-	Nwi_1776	-	seryl-tRNA synthetase
1770	 61.73	0	1948106..1948915	-	269	75675969	-	Nwi_1777	-	sec-independent periplasmic protein translocase
1771	 66.85	+1	1948912..1949454	-	180	75675970	-	Nwi_1778	-	twin-arginine translocation protein TatB
1772	 58.23	-1	1949634..1949870	-	78	75675971	tatA	Nwi_1779	-	twin argininte translocase protein A
1773	 63.50	0	1950129..1950791	-	220	75675972	-	Nwi_1780	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
1774	 52.03	-2	1951672..1951917	+	81	75675973	-	Nwi_1781	-	hypothetical protein
1775	 61.54	0	1952076..1952309	+	77	75675974	-	Nwi_1782	-	hypothetical protein
1776	 51.41	-2	1952684..1952860	-	58	75675975	-	Nwi_1783	-	hypothetical protein
1777	 66.15	+1	1953513..1954871	-	452	75675976	-	Nwi_1784	-	UDP-N-acetylglucosamine pyrophosphorylase
1778	 63.44	0	1955016..1956284	+	422	75675977	-	Nwi_1785	-	hypothetical protein
1779	 60.10	0	1956348..1956728	+	126	75675978	-	Nwi_1786	-	hypothetical protein
1780	 63.16	0	1956688..1958286	-	532	75675979	-	Nwi_1787	-	putative beta (1-6) glucans synthase
1781	 65.62	0	1958733..1959305	+	190	75675980	-	Nwi_1788	-	hypothetical protein
1782	 62.06	0	1959484..1962153	+	889	75675981	-	Nwi_1789	-	glycosyl transferase family protein
1783	 58.64	-1	1962756..1962917	+	53	75675982	-	Nwi_1790	-	hypothetical protein
1784	 61.69	0	1963129..1964274	-	381	75675983	-	Nwi_1791	-	hypothetical protein
1785	 55.56	-1	1964681..1965031	+	116	75675984	-	Nwi_1792	-	hypothetical protein
1786	 61.04	0	1965049..1965546	+	165	75675985	-	Nwi_1793	-	hypothetical protein
1787	 61.45	0	1965864..1966841	-	325	75675986	-	Nwi_1794	-	cysteine synthase
1788	 65.61	0	1967318..1968451	-	377	75675987	tgt	Nwi_1795	-	queuine tRNA-ribosyltransferase
1789	 63.34	0	1968448..1969530	-	360	75675988	queA	Nwi_1796	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1790	 61.94	0	1969868..1970332	-	154	75675989	-	Nwi_1797	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1791	 59.71	0	1970373..1970933	-	186	75675990	-	Nwi_1798	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1792	 64.26	0	1970966..1971463	-	165	75675991	coaD	Nwi_1799	-	phosphopantetheine adenylyltransferase
1793	 65.88	0	1971993..1972247	+	84	75675992	-	Nwi_1800	-	hypothetical protein
1794	 63.68	0	1972338..1975079	-	913	75675993	-	Nwi_1801	-	DNA gyrase subunit A
1795	 70.35	+2	1975229..1975852	+	207	75675994	-	Nwi_1802	-	multiple antibiotic resistance (MarC)-related proteins
1796	 66.27	+1	1975993..1976739	-	248	75675995	-	Nwi_1803	-	chromosome segregation and condensation protein ScpB
1797	 63.08	0	1976761..1977597	-	278	75675996	-	Nwi_1804	-	chromosome segregation and condensation protein ScpA
1798	 64.21	0	1977594..1978610	-	338	75675997	-	Nwi_1805	-	glycoside hydrolase family protein
1799	 66.10	+1	1978658..1980070	-	470	75675998	-	Nwi_1806	-	proline-rich protein
1800	 62.76	0	1980172..1981965	-	597	75675999	-	Nwi_1807	-	arginyl-tRNA synthetase, class Ic
1801	 66.08	+1	1982004..1983206	-	400	75676000	-	Nwi_1808	-	deoxyguanosinetriphosphate triphosphohydrolase
1802	 60.96	0	1983329..1983661	+	110	75676001	-	Nwi_1809	-	HesB/YadR/YfhF
1803	 61.80	0	1983753..1984553	+	266	75676002	-	Nwi_1810	-	exodeoxyribonuclease III xth
1804	 65.89	0	1984663..1985433	-	256	75676003	-	Nwi_1811	-	Sel1 repeat-containing protein
1805	 60.58	0	1985481..1985825	-	114	75676004	-	Nwi_1812	-	hypothetical protein
1806	 62.20	0	1986043..1987476	-	477	75676005	-	Nwi_1813	-	dihydrolipoamide dehydrogenase
1807	 62.01	0	1987495..1988460	-	321	75676006	-	Nwi_1814	-	OmpA/MotB
1808	 61.74	0	1988489..1988833	-	114	75676007	-	Nwi_1815	-	hypothetical protein
1809	 65.12	0	1988830..1990188	-	452	75676008	-	Nwi_1816	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1810	 63.59	0	1990201..1991598	-	465	75676009	-	Nwi_1817	-	pyruvate dehydrogenase subunit beta
1811	 62.20	0	1991626..1992654	-	342	75676010	-	Nwi_1818	-	dehydrogenase, E1 component
1812	 63.21	0	1992839..1993156	-	105	75676011	-	Nwi_1819	-	septum formation initiator
1813	 60.57	0	1993216..1993773	-	185	75676012	-	Nwi_1820	-	NADPH-dependent FMN reductase
1814	 62.59	0	1993835..1994422	-	195	75676013	-	Nwi_1821	-	isoprenylcysteine carboxyl methyltransferase
1815	 64.04	0	1994438..1995694	-	418	75676014	-	Nwi_1822	-	hypothetical protein
1816	 61.33	0	1995914..1996588	+	224	75676015	-	Nwi_1823	-	hypothetical protein
1817	 66.97	+1	1996753..1997727	+	324	75676016	-	Nwi_1824	-	PE_PGRS family protein
1818	 68.59	+1	1999160..1999732	+	190	75676017	-	Nwi_1826	-	outer membrane protein
1819	 63.54	0	1999831..2001111	-	426	75676018	-	Nwi_1827	-	enolase
1820	 61.84	0	2001574..2002050	+	158	75676019	-	Nwi_1828	-	7-cyano-7-deazaguanine reductase
1821	 59.00	0	2002083..2002799	-	238	75676020	-	Nwi_1829	-	hypothetical protein
1822	 65.25	0	2002899..2004095	-	398	75676021	-	Nwi_1830	-	major facilitator transporter
1823	 67.13	+1	2004092..2004955	-	287	75676022	-	Nwi_1831	-	2-dehydro-3-deoxyphosphooctonate aldolase
1824	 63.59	0	2005107..2005463	+	118	75676023	-	Nwi_1832	-	hypothetical protein
1825	 63.48	0	2005468..2007099	-	543	75676024	-	Nwi_1833	-	CTP synthetase
1826	 66.13	+1	2007266..2007640	-	124	162139843	secG	Nwi_1834	-	preprotein translocase subunit SecG
1827	 66.80	+1	2008195..2008947	-	250	75676026	-	Nwi_1835	-	triosephosphate isomerase
1828	 64.42	0	2009269..2011179	+	636	75676027	-	Nwi_1836	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1829	 67.55	+1	2011216..2012229	+	337	75676028	trpD	Nwi_1837	-	anthranilate phosphoribosyltransferase
1830	 64.28	0	2012240..2013034	+	264	75676029	-	Nwi_1838	-	indole-3-glycerol-phosphate synthase
1831	 62.55	0	2013188..2013697	+	169	75676030	moaC	Nwi_1839	-	molybdenum cofactor biosynthesis protein C
1832	 68.07	+1	2014016..2015230	+	404	75676031	-	Nwi_1840	-	molybdopterin biosynthesis protein MoeA
1833	 65.10	0	2015400..2016101	+	233	75676032	-	Nwi_1841	-	LexA repressor
1834	 66.50	+1	2016794..2019130	-	778	75676033	-	Nwi_1842	-	ComEC/Rec2-related protein
1835	 63.87	0	2019217..2020896	-	559	75676034	-	Nwi_1843	-	glutaminyl-tRNA synthetase
1836	 62.51	0	2021064..2022554	+	496	75676035	gltX	Nwi_1844	-	glutamyl-tRNA synthetase
1837	 58.14	-1	2022697..2023998	+	433	75676036	gltA	Nwi_1845	-	type II citrate synthase
1838	 64.48	0	2024022..2025212	-	396	75676037	-	Nwi_1846	-	glycosyl transferase family protein
1839	 65.74	0	2025212..2026078	-	288	75676038	-	Nwi_1847	-	hypothetical protein
1840	 62.83	0	2026089..2026895	-	268	75676039	-	Nwi_1848	-	UDP-N-acetylglucosamine acyltransferase
1841	 59.43	0	2026895..2027350	-	151	75676040	-	Nwi_1849	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1842	 64.37	0	2027370..2028458	-	362	75676041	lpxD	Nwi_1850	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1843	 59.60	0	2028491..2031022	-	843	75676042	-	Nwi_1851	-	Outer membrane protein
1844	 60.24	0	2031304..2032455	-	383	75676043	-	Nwi_1852	-	peptidase M50, putative membrane-associated zinc metallopeptidase
1845	 64.38	0	2032580..2033803	-	407	75676044	-	Nwi_1853	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1846	 63.35	0	2033807..2034649	-	280	75676045	-	Nwi_1854	-	phosphatidate cytidylyltransferase
1847	 62.71	0	2034808..2035566	-	252	75676046	-	Nwi_1855	-	di-trans-poly-cis-decaprenylcistransferase
1848	 56.91	-1	2035585..2036148	-	187	75676047	-	Nwi_1856	-	ribosome recycling factor
1849	 62.34	0	2036200..2036916	-	238	75676048	-	Nwi_1857	-	uridylate kinase
1850	 62.55	0	2036966..2037889	-	307	75676049	tsf	Nwi_1858	-	elongation factor Ts
1851	 62.26	0	2038015..2039013	-	332	75676050	rpsB	Nwi_1859	-	30S ribosomal protein S2
1852	 63.47	0	2039205..2042711	-	1168	75676051	dnaE	Nwi_1860	-	DNA polymerase III subunit alpha
1853	 57.19	-1	2043264..2043548	-	94	75676052	-	Nwi_1861	-	hypothetical protein
1854	 60.30	0	2043612..2044334	-	240	75676053	-	Nwi_1862	-	orotidine 5'-phosphate decarboxylase
1855	 59.94	0	2044863..2045561	-	232	75676054	-	Nwi_1863	-	ABC transporter, ATPase subunit
1856	 61.90	0	2045570..2046850	-	426	75676055	-	Nwi_1864	-	LolC/E family lipoprotein releasing system, transmembrane protein
1857	 61.59	0	2046923..2048242	-	439	75676056	-	Nwi_1865	-	prolyl-tRNA synthetase
1858	 65.73	0	2048647..2049177	-	176	75676057	-	Nwi_1866	-	nuclear export factor GLE1
1859	 61.27	0	2049174..2049710	-	178	75676058	-	Nwi_1867	-	hypothetical protein
1860	 61.54	0	2049739..2051943	-	734	75676059	-	Nwi_1868	-	TonB-dependent receptor
1861	 63.93	0	2052040..2052405	-	121	75676060	-	Nwi_1869	-	hypothetical protein
1862	 55.80	-1	2052624..2052899	-	91	75676061	-	Nwi_1870	-	hypothetical protein
1863	 57.78	-1	2052899..2053303	-	134	75676062	-	Nwi_1871	-	glyoxalase/bleomycin resistance protein/dioxygenase
1864	 63.68	0	2053470..2055143	-	557	75676063	-	Nwi_1872	-	metallo-beta-lactamase superfamily hydrolase
1865	 66.30	+1	2055140..2055952	-	270	75676064	-	Nwi_1873	-	biotin--protein ligase
1866	 61.66	0	2055966..2057402	-	478	75676065	-	Nwi_1874	-	NADH dehydrogenase subunit N
1867	 59.91	0	2057425..2058933	-	502	75676066	-	Nwi_1875	-	NADH dehydrogenase subunit M
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.