IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1606	 49.29	-2	1760682..1761527	+	281	75675805	-	Nwi_1613	-	hypothetical protein
1607	 61.62	0	1761538..1761933	-	131	75675806	-	Nwi_1614	-	hypothetical protein
1608	 60.71	0	1761930..1763945	-	671	75675807	-	Nwi_1615	-	hypothetical protein
1609	 59.11	0	1763947..1765560	-	537	75675808	-	Nwi_1616	-	phage terminase
1610	 61.36	0	1765560..1765955	-	131	75675809	-	Nwi_1617	-	phage terminase, small subunit, putative, P27
1611	 61.43	0	1765955..1767004	-	349	75675810	-	Nwi_1618	-	hypothetical protein
1612	 54.24	-2	1767111..1767440	-	109	75675811	-	Nwi_1619	-	phage head-tail adaptor, putative
1613	 61.15	0	1767422..1767856	-	144	75675812	-	Nwi_1620	-	hypothetical protein
1614	 59.62	0	1767853..1768278	-	141	75675813	-	Nwi_1621	-	Phage protein, HK97, gp10
1615	 58.26	-1	1768268..1768588	-	106	75675814	-	Nwi_1622	-	phage protein DNA packaging protein
1616	 58.97	0	1768585..1768896	-	103	75675815	-	Nwi_1623	-	hypothetical protein
1617	 61.32	0	1769326..1769718	-	130	75675816	-	Nwi_1624	-	hypothetical protein
1618	 60.45	0	1769731..1770888	-	385	75675817	-	Nwi_1625	-	Phage major capsid protein, HK97
1619	 58.23	-1	1770894..1771391	-	165	75675818	-	Nwi_1626	-	peptidase U35, phage prohead HK97
1620	 58.46	-1	1771573..1771962	-	129	75675819	-	Nwi_1627	-	hypothetical protein
1621	 60.81	0	1771955..1773133	-	392	75675820	-	Nwi_1628	-	Phage portal protein, HK97
1622	 58.37	-1	1773840..1775840	-	666	75675821	-	Nwi_1629	-	ATPase
1623	 59.17	0	1775898..1776137	-	79	75675822	-	Nwi_1630	-	hypothetical protein
1624	 55.06	-2	1776134..1776400	-	88	75675823	-	Nwi_1631	-	hypothetical protein
1625	 55.66	-1	1776397..1776714	-	105	75675824	-	Nwi_1632	-	hypothetical protein
1626	 59.96	0	1776736..1777824	-	362	75675825	-	Nwi_1633	-	phage integrase
1627	 56.34	-1	1778303..1778728	+	141	75675826	-	Nwi_1634	-	hypothetical protein
1628	 59.47	0	1779076..1779450	+	124	75675827	-	Nwi_1635	-	hypothetical protein
1629	 54.64	-2	1779756..1780046	+	96	75675828	-	Nwi_1636	-	hypothetical protein
1630	 57.67	-1	1780153..1780719	-	188	75675829	-	Nwi_1637	-	hypothetical protein
1631	 55.23	-1	1780899..1781711	-	270	75675830	-	Nwi_1638	-	phosphoesterase, PA-phosphatase related
1632	 60.07	0	1781949..1782251	+	100	75675831	-	Nwi_1639	-	hypothetical protein
1633	 63.98	0	1782515..1782775	-	86	75675832	-	Nwi_1640	-	hypothetical protein
1634	 65.30	0	1782884..1783984	-	366	75675833	-	Nwi_1641	-	hypothetical protein
1635	 66.38	+1	1783981..1785024	-	347	75675834	-	Nwi_1642	-	tRNA synthetase, class II (D, K and N)
1636	 63.14	0	1785169..1785735	+	188	75675835	-	Nwi_1643	-	elongation factor P
1637	 66.58	+1	1785805..1787028	+	407	75675836	-	Nwi_1644	-	lytic murein transglycosylase
1638	 68.24	+1	1787070..1788911	-	613	75675837	-	Nwi_1645	-	RecJ exonuclease
1639	 65.66	0	1788963..1789958	-	331	75675838	glpX	Nwi_1646	-	fructose 1,6-bisphosphatase II
1640	 65.91	0	1790019..1791341	-	440	75675839	-	Nwi_1647	-	homoserine dehydrogenase
1641	 63.05	0	1791418..1792635	-	405	75675840	-	Nwi_1648	-	aminotransferase
1642	 63.07	0	1792871..1793176	-	101	75675841	-	Nwi_1649	-	hypothetical protein
1643	 62.24	0	1793436..1795265	+	609	75675842	-	Nwi_1650	-	Poly(R)-hydroxyalkanoic acid synthase, class I
1644	 64.82	0	1795351..1796379	-	342	75675843	-	Nwi_1651	-	N-acetyl-gamma-glutamyl-phosphate reductase
1645	 63.09	0	1796464..1796994	-	176	75675844	-	Nwi_1652	-	hypothetical protein
1646	 64.72	0	1797177..1799234	+	685	75675845	-	Nwi_1653	-	DNA topoisomerase IV subunit B
1647	 60.10	0	1799369..1799779	+	136	75675846	-	Nwi_1654	-	glyoxalase/bleomycin resistance protein/dioxygenase
1648	 63.25	0	1799818..1801077	-	419	75675847	-	Nwi_1655	-	hypothetical protein
1649	 62.20	0	1801104..1802603	-	499	75675848	-	Nwi_1656	-	peptidase C14, caspase catalytic subunit p20
1650	 64.74	0	1802960..1804411	+	483	75675849	-	Nwi_1657	-	DEAD/DEAH box helicase
1651	 60.00	0	1804565..1805629	+	354	75675850	-	Nwi_1658	-	diguanylate cyclase
1652	 60.49	0	1805905..1806309	-	134	75675851	-	Nwi_1659	-	HesB/YadR/YfhF
1653	 60.10	0	1806368..1806748	-	126	75675852	-	Nwi_1660	-	hypothetical protein
1654	 61.85	0	1806745..1807989	-	414	75675853	-	Nwi_1661	-	cysteine desulphurases, SufS
1655	 63.11	0	1808154..1809476	-	440	75675854	-	Nwi_1662	-	FeS assembly protein SufD
1656	 61.47	0	1809540..1810289	-	249	75675855	-	Nwi_1663	-	FeS assembly ATPase SufC
1657	 60.19	0	1810433..1811914	-	493	75675856	-	Nwi_1664	-	cysteine desulfurase activator complex subunit SufB
1658	 60.41	0	1811995..1813176	-	393	75675857	-	Nwi_1665	-	cysteine sulfinate desulfinase/cysteine desulfurase
1659	 59.88	0	1813358..1814005	+	215	75675858	-	Nwi_1666	-	hypothetical protein
1660	 67.67	+1	1814056..1815156	-	366	75675859	anmK	Nwi_1667	-	anhydro-N-acetylmuramic acid kinase
1661	 60.77	0	1815311..1816564	+	417	75675860	-	Nwi_1668	-	tyrosyl-tRNA synthetase
1662	 62.01	0	1816589..1820221	-	1210	75675861	-	Nwi_1669	-	hypothetical protein
1663	 61.27	0	1820445..1821074	+	209	75675862	-	Nwi_1670	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1664	 63.96	0	1821175..1822539	+	454	75675863	-	Nwi_1671	-	peptidase M23B
1665	 61.90	0	1822719..1822991	-	90	75675864	-	Nwi_1672	-	hypothetical protein
1666	 63.58	0	1823066..1824943	+	625	75675865	-	Nwi_1673	-	ABC transporter, ATPase subunit
1667	 63.62	0	1825077..1825634	-	185	75675866	-	Nwi_1674	-	hypothetical protein
1668	 60.49	0	1825764..1826216	-	150	75675867	-	Nwi_1675	-	DNA polymerase III subunit chi
1669	 63.54	0	1826213..1827715	-	500	75675868	-	Nwi_1676	-	leucyl aminopeptidase
1670	 58.99	0	1828078..1829250	+	390	75675869	-	Nwi_1677	-	permease YjgP/YjgQ
1671	 59.74	0	1829247..1830344	+	365	75675870	-	Nwi_1678	-	permease YjgP/YjgQ
1672	 61.81	0	1830344..1832833	+	829	75675871	-	Nwi_1679	-	organic solvent tolerance protein
1673	 57.57	-1	1833024..1833968	+	314	75675872	-	Nwi_1680	-	hypothetical protein
1674	 64.29	0	1834071..1835078	+	335	75675873	pdxA	Nwi_1681	-	4-hydroxythreonine-4-phosphate dehydrogenase
1675	 63.31	0	1835075..1835938	+	287	75675874	ksgA	Nwi_1682	-	dimethyladenosine transferase
1676	 62.12	0	1835935..1836594	-	219	75675875	gmk	Nwi_1683	-	guanylate kinase
1677	 60.02	0	1836598..1837485	-	295	75675876	-	Nwi_1684	-	hypothetical protein
1678	 61.11	0	1837922..1839145	-	407	75675877	-	Nwi_1685	-	aminodeoxychorismate lyase
1679	 62.48	0	1839271..1840536	-	421	75675878	-	Nwi_1686	-	3-oxoacyl-(acyl carrier protein) synthase II
1680	 59.17	0	1840631..1840870	-	79	75675879	acpP	Nwi_1687	-	acyl carrier protein
1681	 61.92	0	1841145..1841882	-	245	75675880	-	Nwi_1688	-	3-oxoacyl-(acyl-carrier-protein) reductase
1682	 60.61	0	1842250..1842513	+	87	75675881	-	Nwi_1689	-	hypothetical protein
1683	 66.35	+1	1842571..1843524	-	317	75675882	-	Nwi_1690	-	acyl-carrier-protein S-malonyltransferase
1684	 60.71	0	1843900..1844319	+	139	75675883	rpsF	Nwi_1691	-	30S ribosomal protein S6
1685	 64.17	0	1844325..1844564	+	79	75675884	rpsR	Nwi_1692	-	30S ribosomal protein S18
1686	 66.47	+1	1844698..1845708	+	336	75675885	-	Nwi_1693	-	hypothetical protein
1687	 64.53	0	1845747..1846355	+	202	75675886	rplI	Nwi_1694	-	50S ribosomal protein L9
1688	 61.22	0	1846728..1849133	-	801	75675887	-	Nwi_1695	-	AAA ATPase
1689	 54.74	-2	1849386..1849796	-	136	75675888	clpS	Nwi_1696	-	ATP-dependent Clp protease adaptor protein ClpS
1690	 55.78	-1	1850246..1852063	+	605	75675889	-	Nwi_1697	-	hypothetical protein
1691	 57.52	-1	1852240..1852578	-	112	75675890	-	Nwi_1698	-	hypothetical protein
1692	 65.70	0	1852951..1854714	+	587	75675891	-	Nwi_1699	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
1693	 61.98	0	1855052..1855948	-	298	75675892	-	Nwi_1700	-	heat shock protein DnaJ
1694	 62.61	0	1855968..1856732	-	254	75675893	-	Nwi_1701	-	hypothetical protein
1695	 62.91	0	1857059..1857910	+	283	75675894	-	Nwi_1702	-	pantoate-beta-alanine ligase
1696	 63.23	0	1857944..1858408	-	154	75675895	-	Nwi_1703	-	hypothetical protein
1697	 66.12	+1	1858408..1859328	-	306	75675896	-	Nwi_1704	-	hypothetical protein
1698	 57.29	-1	1859830..1860021	-	63	75675897	-	Nwi_1705	-	hypothetical protein
1699	 60.88	0	1860284..1860940	-	218	75675898	-	Nwi_1706	-	glutathione S-transferase
1700	 61.48	0	1861190..1861459	+	89	75675899	-	Nwi_1707	-	hypothetical protein
1701	 61.68	0	1861474..1862316	-	280	75675900	-	Nwi_1708	-	hypothetical protein
1702	 65.14	0	1862329..1862721	-	130	75675901	-	Nwi_1709	-	XRE family transcriptional regulator
1703	 64.17	0	1862823..1864106	+	427	75675902	-	Nwi_1710	-	polysaccharide deacetylase
1704	 64.96	0	1864235..1864468	-	77	75675903	-	Nwi_1711	-	hypothetical protein
1705	 63.74	0	1864707..1867442	+	911	75675904	-	Nwi_1712	-	DNA topoisomerase I
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.