IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1480	 60.30	0	1618354..1619484	+	376	75675679	-	Nwi_1487	-	phage integrase
1481	 55.00	-2	1619748..1619987	-	79	75675680	-	Nwi_1488	-	hypothetical protein
1482	 62.50	0	1619994..1620473	-	159	75675681	-	Nwi_1489	-	hypothetical protein
1483	 58.06	-1	1620950..1621321	+	123	75675682	-	Nwi_1490	-	putative lipoprotein
1484	 65.07	0	1621871..1622245	+	124	75675683	-	Nwi_1491	-	transposase IS3/IS911
1485	 61.98	0	1622242..1623222	+	326	75675684	-	Nwi_1492	-	helix-turn-helix, Fis-type
1486	 58.37	-1	1623167..1624480	-	437	75675685	-	Nwi_1493	-	TOPRIM
1487	 54.92	-2	1624477..1624740	-	87	75675686	-	Nwi_1494	-	hypothetical protein
1488	 54.61	-2	1625528..1626124	-	198	75675687	-	Nwi_1495	-	hypothetical protein
1489	 60.47	0	1626121..1627152	-	343	75675688	-	Nwi_1496	-	phage integrase
1490	 54.62	-2	1627507..1627755	+	82	75675689	-	Nwi_1497	-	hypothetical protein
1491	 62.00	0	1628029..1628457	+	142	75675690	-	Nwi_1498	-	hypothetical protein
1492	 63.37	0	1628607..1629425	+	272	75675691	-	Nwi_1499	-	hypothetical protein
1493	 64.96	0	1629447..1629857	-	136	75675692	-	Nwi_1500	-	cupin region
1494	 63.54	0	1629986..1630720	+	244	75675693	-	Nwi_1501	-	hypothetical protein
1495	 64.41	0	1630717..1631736	+	339	75675694	-	Nwi_1502	-	allophanate hydrolase subunit 2
1496	 62.89	0	1631798..1632565	+	255	75675695	-	Nwi_1503	-	hypothetical protein
1497	 62.46	0	1632901..1633875	-	324	75675696	-	Nwi_1504	-	zinc-containing alcohol dehydrogenase superfamily protein
1498	 61.85	0	1633961..1634686	-	241	75675697	-	Nwi_1505	-	integral membrane protein TerC
1499	 63.13	0	1634683..1635417	-	244	75675698	-	Nwi_1506	-	CDP-alcohol phosphatidyltransferase
1500	 65.18	0	1635569..1636843	+	424	75675699	-	Nwi_1507	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1501	 55.65	-1	1636970..1637314	+	114	75675700	-	Nwi_1508	-	hemimethylated DNA-binding region
1502	 61.77	0	1637384..1638118	-	244	75675701	-	Nwi_1509	-	invasion associated locus B
1503	 62.10	0	1638492..1640354	+	620	75675702	-	Nwi_1510	-	extracellular solute-binding protein
1504	 66.07	+1	1640359..1641861	+	500	75675703	-	Nwi_1511	-	AMP-dependent synthetase and ligase
1505	 65.04	0	1641947..1643176	+	409	75675704	-	Nwi_1512	-	hypothetical protein
1506	 61.87	0	1643185..1646709	-	1174	75675705	-	Nwi_1513	-	transcription-repair coupling factor
1507	 60.70	0	1646706..1647074	-	122	75675706	-	Nwi_1514	-	hypothetical protein
1508	 66.19	+1	1647153..1649252	+	699	75675707	-	Nwi_1515	-	DEAD/DEAH box helicase
1509	 62.53	0	1649391..1650164	-	257	75675708	-	Nwi_1516	-	hypothetical protein
1510	 61.36	0	1650282..1652108	-	608	75675709	-	Nwi_1517	-	D-fructose-6-phosphate amidotransferase
1511	 59.29	0	1652312..1652677	+	121	75675710	-	Nwi_1518	-	hypothetical protein
1512	 57.62	-1	1653014..1653853	-	279	75675711	-	Nwi_1519	-	hypothetical protein
1513	 63.87	0	1654004..1654717	-	237	75675712	-	Nwi_1520	-	hypothetical protein
1514	 61.76	0	1654765..1657863	-	1032	75675713	-	Nwi_1521	-	acriflavin resistance protein
1515	 62.92	0	1657863..1660985	-	1040	75675714	-	Nwi_1522	-	acriflavin resistance protein
1516	 63.97	0	1661048..1662421	-	457	75675715	-	Nwi_1523	-	secretion protein HlyD
1517	 65.66	0	1662411..1663895	-	494	75675716	-	Nwi_1524	-	RND efflux system, outer membrane lipoprotein, NodT
1518	 59.96	0	1664324..1665382	+	352	75675717	-	Nwi_1525	-	cysteine synthase A
1519	 59.68	0	1665396..1666139	-	247	75675718	-	Nwi_1526	-	ABC transporter, ATPase subunit
1520	 62.46	0	1666152..1667672	-	506	75675719	-	Nwi_1527	-	amino acid ABC transporter, inner membrane component
1521	 60.61	0	1667669..1668874	-	401	75675720	-	Nwi_1528	-	amino acid ABC transporter, inner membrane component
1522	 57.73	-1	1668890..1669930	-	346	75675721	-	Nwi_1529	-	extracellular solute-binding protein
1523	 63.32	0	1670394..1671590	+	398	75675722	-	Nwi_1530	-	cystathionine beta-lyase
1524	 52.78	-2	1671675..1671998	-	107	75675723	-	Nwi_1531	-	lipid A biosynthesis
1525	 63.73	0	1671991..1672740	-	249	75675724	-	Nwi_1532	-	glycosyl transferase family protein
1526	 63.36	0	1672754..1674508	-	584	75675725	-	Nwi_1533	-	glycosyl transferase family protein
1527	 66.34	+1	1674548..1676668	-	706	75675726	-	Nwi_1534	-	penicillin-binding protein 1C
1528	 64.37	0	1676665..1681884	-	1739	75675727	-	Nwi_1535	-	extracellular alpha-helical protein
1529	 67.61	+1	1683246..1683563	+	105	75675728	-	Nwi_1536	-	hypothetical protein
1530	 63.87	0	1683509..1684045	-	178	75675729	-	Nwi_1537	-	hypothetical protein
1531	 57.69	-1	1684049..1684282	-	77	75675730	-	Nwi_1538	-	hypothetical protein
1532	 64.54	0	1684576..1684998	-	140	75675731	-	Nwi_1539	-	hypothetical protein
1533	 62.40	0	1684998..1685771	-	257	75675732	-	Nwi_1540	-	hypothetical protein
1534	 59.48	0	1686140..1687627	+	495	75675733	-	Nwi_1541	-	helix-turn-helix, Fis-type
1535	 61.19	0	1687660..1688919	-	419	75675734	-	Nwi_1542	-	Phage major capsid protein, HK97
1536	 64.07	0	1688930..1689775	-	281	75675735	-	Nwi_1543	-	peptidase S14, ClpP
1537	 61.33	0	1689753..1691027	-	424	75675736	-	Nwi_1544	-	Phage portal protein, HK97
1538	 61.63	0	1691040..1692806	-	588	75675737	-	Nwi_1545	-	phage terminase
1539	 63.34	0	1692841..1694253	-	470	75675738	-	Nwi_1546	-	DNA methylase N-4/N-6
1540	 59.87	0	1694228..1694698	-	156	75675739	-	Nwi_1547	-	hypothetical protein
1541	 61.76	0	1694944..1695330	-	128	75675740	-	Nwi_1548	-	hypothetical protein
1542	 62.27	0	1695554..1696258	-	234	75675741	-	Nwi_1549	-	transcription antitermination protein nusG
1543	 65.50	0	1696255..1697451	-	398	75675742	-	Nwi_1550	-	hypothetical protein
1544	 63.87	0	1697448..1697840	-	130	75675743	-	Nwi_1551	-	hypothetical protein
1545	 60.41	0	1697837..1698571	-	244	75675744	-	Nwi_1552	-	hypothetical protein
1546	 61.33	0	1698774..1699316	-	180	75675745	-	Nwi_1553	-	hypothetical protein
1547	 62.85	0	1699313..1701565	-	750	75675746	-	Nwi_1554	-	hypothetical protein
1548	 64.42	0	1701562..1702095	-	177	75675747	-	Nwi_1555	-	hypothetical protein
1549	 56.88	-1	1702092..1702367	-	91	75675748	-	Nwi_1556	-	hypothetical protein
1550	 65.70	0	1702512..1703132	-	206	75675749	-	Nwi_1557	-	hypothetical protein
1551	 63.37	0	1703255..1703527	+	90	75675750	-	Nwi_1558	-	hypothetical protein
1552	 64.63	0	1703752..1704144	-	130	75675751	-	Nwi_1559	-	hypothetical protein
1553	 56.41	-1	1704243..1704515	+	90	75675752	-	Nwi_1560	-	hypothetical protein
1554	 67.89	+1	1705281..1705526	+	81	75675753	-	Nwi_1561	-	hypothetical protein
1555	 68.40	+1	1705612..1705842	+	76	75675754	-	Nwi_1562	-	hypothetical protein
1556	 62.22	0	1705839..1706108	+	89	75675755	-	Nwi_1563	-	hypothetical protein
1557	 64.29	0	1706301..1707560	+	419	75675756	-	Nwi_1564	-	phage Gp37Gp68
1558	 63.95	0	1708146..1709396	+	416	75675757	-	Nwi_1565	-	phage integrase
1559	 61.38	0	1709491..1709982	-	163	75675758	-	Nwi_1566	-	single-strand DNA-binding protein
1560	 62.68	0	1710440..1711216	+	258	75675759	-	Nwi_1567	-	putative outer-membrane protein precursor
1561	 61.64	0	1711725..1714706	+	993	75675760	uvrA	Nwi_1568	-	excinuclease ABC subunit A
1562	 65.41	0	1714929..1715564	+	211	75675761	-	Nwi_1569	-	hypothetical protein
1563	 54.81	-2	1715982..1716251	+	89	75675762	-	Nwi_1570	-	hypothetical protein
1564	 64.53	0	1716361..1720158	+	1265	75675763	-	Nwi_1571	-	ribonucleotide-diphosphate reductase subunit alpha
1565	 65.23	0	1720430..1721335	-	301	75675764	-	Nwi_1572	-	integrase, catalytic region
1566	 64.24	0	1721332..1721661	-	109	75675765	-	Nwi_1573	-	transposase IS3/IS911
1567	 62.25	0	1722016..1722264	+	82	75675766	-	Nwi_1574	-	hypothetical protein
1568	 63.29	0	1722783..1723493	-	236	75675767	-	Nwi_1575	-	polyphosphate glucokinase
1569	 62.77	0	1723767..1724639	+	290	75675768	-	Nwi_1576	-	putative glutathione S-transferase YghU
1570	 66.81	+1	1724688..1725368	+	226	75675769	fabG	Nwi_1577	-	3-ketoacyl-(acyl-carrier-protein) reductase
1571	 58.20	-1	1725674..1726216	+	180	75675770	-	Nwi_1578	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1572	 61.80	0	1726254..1726931	+	225	75675771	-	Nwi_1579	-	hypothetical protein
1573	 52.38	-2	1726969..1727220	-	83	75675772	-	Nwi_1580	-	hypothetical protein
1574	 60.67	0	1727286..1727585	+	99	75675773	-	Nwi_1581	-	hypothetical protein
1575	 59.52	0	1727883..1728134	+	83	75675774	-	Nwi_1582	-	hypothetical protein
1576	 56.51	-1	1728296..1728856	-	186	75675775	-	Nwi_1583	-	CreA
1577	 62.28	0	1729058..1730539	+	493	75675776	-	Nwi_1584	-	hypothetical protein
1578	 60.73	0	1730712..1731638	+	308	75675777	-	Nwi_1585	-	polysaccharide deacetylase
1579	 60.11	0	1731660..1732208	+	182	75675778	-	Nwi_1586	-	hypothetical protein
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.