IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
99	 63.37	0	118015..120045	+	676	75674298	-	Nwi_0099	-	hypothetical protein
100	 59.24	0	120114..121379	-	421	75674299	rho	Nwi_0100	-	transcription termination factor Rho
101	 54.85	-2	121775..122197	-	140	75674300	-	Nwi_0101	-	hypothetical protein
102	 60.62	0	122627..123469	+	280	75674301	-	Nwi_0102	-	hypothetical protein
103	 62.07	0	123476..124084	+	202	75674302	-	Nwi_0103	-	Maf-like protein
104	 60.67	0	124101..124700	+	199	75674303	coaE	Nwi_0104	-	dephospho-CoA kinase
105	 60.00	0	124822..125541	+	239	75674304	-	Nwi_0105	-	DNA polymerase III, epsilon subunit
106	 57.50	-1	125554..126033	-	159	75674305	-	Nwi_0106	-	preprotein translocase subunit SecB
107	 60.85	0	126485..127189	+	234	75674306	-	Nwi_0107	-	hypothetical protein
108	 61.70	0	127167..128675	+	502	75674307	-	Nwi_0108	-	membrane-bound lytic murein transglycosylase
109	 65.11	0	128672..129250	+	192	75674308	-	Nwi_0109	-	Smr protein/MutS2
110	 62.19	0	129419..130759	+	446	75674309	-	Nwi_0110	-	histidine kinase
111	 64.68	0	130852..131406	+	184	75674310	-	Nwi_0111	-	helix-turn-helix, Fis-type
112	 63.41	0	131536..132027	-	163	75674311	-	Nwi_0112	-	hypothetical protein
113	 61.48	0	132223..132897	+	224	75674312	-	Nwi_0113	-	beta-lactamase-like
114	 64.40	0	133009..135828	-	939	75674313	-	Nwi_0114	-	Signal transduction histidine kinase
115	 64.78	0	135988..136941	+	317	75674314	-	Nwi_0115	-	hypothetical protein
116	 63.03	0	136979..137335	+	118	75674315	-	Nwi_0116	-	hypothetical protein
117	 63.73	0	137378..138331	+	317	75674316	-	Nwi_0117	-	glutathione synthetase
118	 66.73	+1	138414..139952	+	512	75674317	-	Nwi_0118	-	Mg chelatase-related protein
119	 63.84	0	140139..142403	+	754	75674318	-	Nwi_0119	-	Signal transduction histidine kinase
120	 61.13	0	142490..143446	-	318	75674319	-	Nwi_0120	-	pantothenate kinase
121	 60.19	0	143665..143988	-	107	162139853	hisE	Nwi_0121	-	phosphoribosyl-ATP pyrophosphatase
122	 64.35	0	144067..144843	-	258	75674321	-	Nwi_0122	-	imidazole glycerol phosphate synthase subunit HisF
123	 67.48	+1	144859..145599	-	246	162139852	-	Nwi_0123	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
124	 64.67	0	145596..146246	-	216	75674323	hisH	Nwi_0124	-	imidazole glycerol phosphate synthase subunit HisH
125	 68.31	+1	146243..146791	-	182	75674324	-	Nwi_0125	-	hypothetical protein
126	 62.63	0	146794..147387	-	197	75674325	-	Nwi_0126	-	imidazoleglycerol-phosphate dehydratase
127	 62.88	0	147685..148239	+	184	75674326	-	Nwi_0127	-	ATP-dependent protease peptidase subunit
128	 66.04	0	148243..148722	+	159	75674327	-	Nwi_0128	-	GCN5-related N-acetyltransferase
129	 61.75	0	148795..150096	+	433	75674328	hslU	Nwi_0129	-	ATP-dependent protease ATP-binding subunit
130	 61.12	0	150408..151742	+	444	75674329	-	Nwi_0130	-	polyhydroxyalkanoate depolymerase
131	 62.72	0	151952..152788	+	278	75674330	-	Nwi_0131	-	hypothetical protein
132	 66.53	+1	152996..155200	-	734	75674331	-	Nwi_0132	-	penicillin-binding protein 1A
133	 64.18	0	155426..158203	-	925	75674332	-	Nwi_0133	-	PII uridylyl-transferase
134	 67.06	+1	158519..159523	+	334	75674333	hslO	Nwi_0134	-	Hsp33-like chaperonin
135	 57.56	-1	159648..160361	-	237	75674334	apaG	Nwi_0135	-	ApaG
136	 61.94	0	160453..161700	+	415	75674335	-	Nwi_0136	-	acyltransferase 3
137	 62.47	0	161697..162458	+	253	75674336	-	Nwi_0137	-	hypothetical protein
138	 66.36	+1	162455..163438	+	327	75674337	-	Nwi_0138	-	lysophospholipase L1 and related esterase
139	 65.16	0	163474..164667	-	397	75674338	-	Nwi_0139	-	O-succinylhomoserine sulfhydrylase
140	 65.67	0	164942..166048	+	368	75674339	-	Nwi_0140	-	2'-deoxycytidine 5'-triphosphate deaminase
141	 60.89	0	166460..166840	+	126	75674340	-	Nwi_0141	-	camphor resistance CrcB protein
142	 57.54	-1	167204..167488	+	94	75674341	-	Nwi_0142	-	hypothetical protein
143	 62.05	0	167648..168124	+	158	75674342	-	Nwi_0143	-	hypothetical protein
144	 60.27	0	168478..169071	+	197	75674343	-	Nwi_0144	-	electron transport protein SCO1/SenC
145	 64.52	0	169062..169712	-	216	75674344	-	Nwi_0145	-	glycosyl transferase
146	 57.79	-1	169807..170268	+	153	75674345	-	Nwi_0146	-	hypothetical protein
147	 56.94	-1	171280..172266	-	328	75674346	-	Nwi_0147	-	transposase
148	 54.76	-2	172784..173245	-	153	75674347	-	Nwi_0148	-	hypothetical protein
149	 66.96	+1	173398..174750	-	450	75674348	-	Nwi_0149	-	glycosyl transferase family protein
150	 63.52	0	174846..175766	+	306	75674349	-	Nwi_0150	-	extracellular solute-binding protein
151	 63.05	0	175870..177501	+	543	75674350	lysK	Nwi_0151	-	lysyl-tRNA synthetase
152	 67.44	+1	177645..178163	+	172	75674351	-	Nwi_0152	-	ErfK/YbiS/YcfS/YnhG
153	 57.27	-1	178339..178902	+	187	75674352	pyrE	Nwi_0153	-	orotate phosphoribosyltransferase
154	 68.24	+1	178934..179506	-	190	75674353	-	Nwi_0154	-	nuclease
155	 65.92	0	179739..180005	-	88	75674354	-	Nwi_0155	-	hypothetical protein
156	 68.44	+1	180146..181498	+	450	75674355	-	Nwi_0156	-	tRNA and rRNA cytosine-C5-methylase
157	 67.81	+1	181625..183379	+	584	75674356	-	Nwi_0157	-	heparinase II/III-like
158	 65.85	0	183485..185077	+	530	75674357	purH	Nwi_0158	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
159	 63.16	0	185184..185954	+	256	75674358	-	Nwi_0159	-	cytochrome c, class I
160	 66.38	+1	186074..187462	-	462	75674359	-	Nwi_0160	-	major facilitator transporter
161	 66.67	+1	187584..189338	+	584	75674360	-	Nwi_0161	-	gamma-glutamyltranspeptidase
162	 65.41	0	189383..190732	+	449	75674361	-	Nwi_0162	-	multi anti extrusion protein MatE
163	 66.78	+1	190817..191737	+	306	75674362	-	Nwi_0163	-	2-dehydropantoate 2-reductase
164	 64.50	0	191782..192474	-	230	75674363	-	Nwi_0164	-	glutathione S-transferase
165	 61.96	0	192738..193544	+	268	75674364	uppP	Nwi_0165	-	undecaprenyl pyrophosphate phosphatase
166	 68.93	+1	193564..194625	-	353	75674365	-	Nwi_0166	-	NAD-dependent epimerase/dehydratase
167	 63.18	0	194958..195530	+	190	75674366	-	Nwi_0167	-	TPR repeat-containing protein
168	 58.61	-1	195801..196160	-	119	75674367	-	Nwi_0168	-	hypothetical protein
169	 56.37	-1	196227..197042	-	271	75674368	-	Nwi_0169	-	hypothetical protein
170	 51.23	-2	197184..197468	+	94	75674369	-	Nwi_0170	-	hypothetical protein
171	 65.22	0	197468..198088	+	206	75674370	-	Nwi_0171	-	3'-5' exonuclease
172	 63.06	0	198297..198989	+	230	75674371	-	Nwi_0172	-	hypothetical protein
173	 62.28	0	198986..199669	+	227	75674372	-	Nwi_0173	-	OstA-like protein
174	 66.57	+1	199980..200978	+	332	75674373	-	Nwi_0174	-	ABC transporter, ATPase subunit
175	 65.62	0	201036..201323	-	95	75674374	-	Nwi_0175	-	hypothetical protein
176	 72.18	+2	201488..201868	+	126	75674375	-	Nwi_0176	-	hypothetical protein
177	 64.09	0	202121..203752	+	543	75674376	-	Nwi_0177	-	RNA polymerase factor sigma-54
178	 62.98	0	203809..204405	+	198	75674377	-	Nwi_0178	-	sigma 54 modulation protein/ribosomal protein S30EA
179	 63.20	0	204654..205115	+	153	75674378	-	Nwi_0179	-	PTS IIA-like nitrogen-regulatory protein PtsN
180	 63.84	0	205145..205675	-	176	75674379	-	Nwi_0180	-	transposase, IS4
181	 61.90	0	205528..205926	-	132	75674380	-	Nwi_0181	-	transposase
182	 62.51	0	205982..207352	-	456	75674381	-	Nwi_0182	-	glutamate--cysteine ligase
183	 67.45	+1	207838..211017	+	1059	75674382	-	Nwi_0183	-	Sel1 repeat-containing protein
184	 65.41	0	211095..212126	+	343	75674383	-	Nwi_0184	-	hypothetical protein
185	 64.90	0	212123..212914	+	263	75674384	-	Nwi_0185	-	hypothetical protein
186	 66.12	+1	213080..213805	-	241	75674385	-	Nwi_0186	-	metallophosphoesterase
187	 66.03	0	213813..216320	-	835	75674386	-	Nwi_0187	-	DEAD/DEAH box helicase
188	 63.36	0	216696..218057	+	453	75674387	-	Nwi_0188	-	outer membrane protein
189	 66.56	+1	218552..219475	+	307	75674388	-	Nwi_0189	-	heat shock protein HtpX
190	 66.50	+1	219789..221012	+	407	75674389	-	Nwi_0190	-	hypothetical protein
191	 66.24	+1	221163..222323	-	386	75674390	-	Nwi_0191	-	coproporphyrinogen III oxidase
192	 67.45	+1	222310..222945	-	211	75674391	-	Nwi_0192	-	putative deoxyribonucleotide triphosphate pyrophosphatase
193	 65.55	0	223063..223776	-	237	75674392	rph	Nwi_0193	-	ribonuclease PH
194	 63.73	0	223971..225059	+	362	75674393	hrcA	Nwi_0194	-	heat-inducible transcription repressor
195	 64.31	0	225153..225746	+	197	75674394	-	Nwi_0195	-	GrpE protein
196	 61.34	0	225812..226750	-	312	75674395	-	Nwi_0196	-	hypothetical protein
197	 62.18	0	227144..229036	+	630	75674396	dnaK	Nwi_0197	-	molecular chaperone DnaK
198	 62.53	0	229185..230321	+	378	75674397	-	Nwi_0198	-	heat shock protein DnaJ
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.