IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1275	 63.96	0	1414420..1414788	-	122	75675474	-	Nwi_1282	-	transposase, IS4
1276	 61.90	0	1414803..1415201	-	132	75675475	-	Nwi_1283	-	transposase
1277	 64.22	0	1415326..1418190	-	954	75675476	-	Nwi_1284	-	glycine dehydrogenase
1278	 61.20	0	1418265..1418630	-	121	75675477	-	Nwi_1285	-	glycine cleavage system protein H
1279	 67.53	+1	1418640..1419791	-	383	75675478	-	Nwi_1286	-	glycine cleavage system aminomethyltransferase T
1280	 65.88	0	1420243..1422918	+	891	75675479	alaS	Nwi_1287	-	alanyl-tRNA synthetase
1281	 56.63	-1	1422936..1423184	-	82	75675480	-	Nwi_1288	-	hypothetical protein
1282	 61.87	0	1423630..1424004	+	124	75675481	-	Nwi_1289	-	transposase
1283	 61.84	0	1424159..1424386	+	75	75675482	-	Nwi_1290	-	IS4 family transposase
1284	 60.39	0	1424456..1425172	-	238	75675483	-	Nwi_1291	-	ISRm2011-2 transposase protein
1285	 60.38	0	1425556..1425921	+	121	75675484	-	Nwi_1292	-	ISBm1, transposase orfA
1286	 58.28	-1	1426284..1427273	-	329	75675485	-	Nwi_1293	-	integrase, catalytic region
1287	 61.63	0	1428024..1429235	-	403	75675486	-	Nwi_1294	-	isocitrate dehydrogenase
1288	 67.08	+1	1429543..1430754	+	403	75675487	-	Nwi_1295	-	RNA methyltransferase TrmH, group 1
1289	 58.68	-1	1430821..1431771	-	316	75675488	-	Nwi_1296	-	integrase, catalytic region
1290	 60.38	0	1432233..1432598	-	121	75675489	-	Nwi_1297	-	ISBm1, transposase orfA
1291	 65.76	0	1433530..1433859	+	109	75675490	-	Nwi_1298	-	transposase IS3/IS911
1292	 61.88	0	1433856..1434836	+	326	75675491	-	Nwi_1299	-	helix-turn-helix, Fis-type
1293	 48.91	-2	1434849..1435259	+	136	75675492	-	Nwi_1300	-	hypothetical protein
1294	 63.39	0	1435334..1435912	-	192	75675493	-	Nwi_1301	-	hypothetical protein
1295	 59.71	0	1436341..1436829	+	162	75675494	-	Nwi_1302	-	cyanate hydratase
1296	 58.72	-1	1437063..1437389	-	108	75675495	-	Nwi_1303	-	hypothetical protein
1297	 60.16	0	1437734..1438501	+	255	162139848	-	Nwi_1304	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1298	 61.25	0	1438560..1438799	+	79	75675497	-	Nwi_1305	-	phosphoribosylformylglycinamidine synthase subunit PurS
1299	 65.81	0	1438812..1439513	+	233	75675498	-	Nwi_1306	-	phosphoribosylformylglycinamidine synthase I
1300	 48.97	-2	1439510..1440187	+	225	75675499	-	Nwi_1307	-	hypothetical protein
1301	 65.09	0	1440187..1442400	+	737	75675500	-	Nwi_1308	-	phosphoribosylformylglycinamidine synthase II
1302	 62.39	0	1442613..1442846	+	77	75675501	-	Nwi_1309	-	BolA-like protein
1303	 60.77	0	1442853..1443836	-	327	75675502	-	Nwi_1310	-	hypothetical protein
1304	 63.86	0	1443876..1445123	-	415	75675503	-	Nwi_1311	-	hypothetical protein
1305	 56.34	-1	1445357..1445695	+	112	75675504	-	Nwi_1312	-	glutaredoxin-like protein
1306	 58.33	-1	1445922..1446185	+	87	75675505	-	Nwi_1313	-	hypothetical protein
1307	 60.68	0	1446481..1446831	+	116	75675506	-	Nwi_1314	-	transposase
1308	 59.50	0	1446783..1447424	+	213	75675507	-	Nwi_1315	-	ISRm2011-2 transposase protein
1309	 59.06	0	1447600..1448217	-	205	75675508	rpsD	Nwi_1316	-	30S ribosomal protein S4
1310	 68.38	+1	1448526..1449341	-	271	75675509	-	Nwi_1317	-	glutamate racemase
1311	 61.65	0	1449609..1450166	-	185	75675510	-	Nwi_1318	-	hypothetical protein
1312	 60.51	0	1450578..1451048	+	156	75675511	-	Nwi_1319	-	hypothetical protein
1313	 62.26	0	1451258..1452052	+	264	75675512	-	Nwi_1320	-	rhomboid-like protein
1314	 60.84	0	1452287..1452715	+	142	75675513	-	Nwi_1321	-	hypothetical protein
1315	 61.60	0	1452808..1453182	+	124	75675514	-	Nwi_1322	-	transposase
1316	 61.76	0	1453260..1453565	+	101	75675515	-	Nwi_1323	-	ISCc1, transposase OrfB
1317	 64.95	0	1453579..1454625	-	348	75675516	-	Nwi_1324	-	patatin
1318	 64.48	0	1454862..1455911	+	349	75675517	-	Nwi_1325	-	hypothetical protein
1319	 63.56	0	1456139..1456492	-	117	75675518	-	Nwi_1326	-	hypothetical protein
1320	 63.83	0	1456759..1457676	+	305	75675519	-	Nwi_1327	-	hypothetical protein
1321	 64.69	0	1457787..1458242	-	151	75675520	-	Nwi_1328	-	nitrogen-fixing NifU-like
1322	 61.71	0	1458492..1459217	+	241	75675521	-	Nwi_1329	-	GTP cyclohydrolase I
1323	 63.47	0	1459462..1459899	+	145	75675522	hisI	Nwi_1330	-	phosphoribosyl-AMP cyclohydrolase
1324	 64.66	0	1460271..1461215	+	314	75675523	-	Nwi_1331	-	hypothetical protein
1325	 64.51	0	1461430..1463100	+	556	75675524	-	Nwi_1332	-	hypothetical protein
1326	 60.97	0	1463188..1463766	-	192	75675525	-	Nwi_1333	-	Hpt protein
1327	 59.34	0	1463778..1464323	-	181	75675526	-	Nwi_1334	-	response regulator receiver
1328	 63.61	0	1464430..1465215	-	261	75675527	ppnK	Nwi_1335	-	inorganic polyphosphate/ATP-NAD kinase
1329	 64.63	0	1465483..1465923	+	146	75675528	-	Nwi_1336	-	hypothetical protein
1330	 64.33	0	1466308..1467033	+	241	75675529	-	Nwi_1337	-	putative outer membrane protein
1331	 60.58	0	1467245..1469692	-	815	75675530	-	Nwi_1338	-	TonB-dependent siderophore receptor
1332	 64.58	0	1470031..1470990	-	319	75675531	-	Nwi_1339	-	FecR protein
1333	 64.53	0	1471052..1471612	-	186	75675532	-	Nwi_1340	-	fec I like protein
1334	 62.45	0	1472191..1472427	-	78	75675533	-	Nwi_1341	-	hypothetical protein
1335	 61.73	0	1472948..1473190	+	80	75675534	-	Nwi_1342	-	hypothetical protein
1336	 51.94	-2	1474356..1474715	-	119	75675535	-	Nwi_1343	-	PRC-barrel protein
1337	 54.69	-2	1476083..1476274	+	63	75675536	secE	Nwi_1344	-	preprotein translocase subunit SecE
1338	 60.26	0	1476304..1476834	+	176	75675537	nusG	Nwi_1345	-	transcription antitermination protein NusG
1339	 60.61	0	1477022..1477450	+	142	75675538	rplK	Nwi_1346	-	50S ribosomal protein L11
1340	 63.78	0	1477457..1478149	+	230	75675539	rplA	Nwi_1347	-	50S ribosomal protein L1
1341	 63.58	0	1478854..1479372	+	172	162139847	rplJ	Nwi_1348	-	50S ribosomal protein L10
1342	 64.55	0	1479427..1479804	+	125	75675541	rplL	Nwi_1349	-	50S ribosomal protein L7/L12
1343	 62.54	0	1480397..1484539	+	1380	75675542	rpoB	Nwi_1350	-	DNA-directed RNA polymerase subunit beta
1344	 60.79	0	1484698..1488897	+	1399	75675543	-	Nwi_1351	-	DNA-directed RNA polymerase subunit beta'
1345	 58.65	-1	1489325..1489798	-	157	75675544	-	Nwi_1352	-	hypothetical protein
1346	 58.16	-1	1489828..1490121	-	97	75675545	-	Nwi_1353	-	hypothetical protein
1347	 58.41	-1	1490173..1490499	-	108	75675546	-	Nwi_1354	-	hypothetical protein
1348	 59.87	0	1490565..1491683	+	372	75675547	-	Nwi_1355	-	hypothetical protein
1349	 57.38	-1	1491845..1492555	+	236	75675548	-	Nwi_1356	-	hypothetical protein
1350	 56.67	-1	1492643..1492882	+	79	75675549	-	Nwi_1357	-	hypothetical protein
1351	 60.38	0	1493645..1494010	+	121	75675550	-	Nwi_1358	-	ISBm1, transposase orfA
1352	 61.02	0	1495400..1495771	+	123	75675551	rpsL	Nwi_1359	-	30S ribosomal protein S12
1353	 59.87	0	1495787..1496257	+	156	75675552	-	Nwi_1360	-	30S ribosomal protein S7
1354	 60.78	0	1496290..1498362	+	690	75675553	-	Nwi_1361	-	elongation factor G
1355	 61.29	0	1498402..1499592	+	396	75675554	-	Nwi_1362	-	elongation factor Tu
1356	 58.58	-1	1499694..1500002	+	102	75675555	rpsJ	Nwi_1363	-	30S ribosomal protein S10
1357	 63.04	0	1500104..1500847	+	247	75675556	rplC	Nwi_1364	-	50S ribosomal protein L3
1358	 62.00	0	1500849..1501469	+	206	75675557	rplD	Nwi_1365	-	50S ribosomal protein L4
1359	 57.58	-1	1501466..1501762	+	98	75675558	rplW	Nwi_1366	-	50S ribosomal protein L23
1360	 62.59	0	1501791..1502624	+	277	75675559	rplB	Nwi_1367	-	50S ribosomal protein L2
1361	 58.06	-1	1502640..1502918	+	92	75675560	rpsS	Nwi_1368	-	30S ribosomal protein S19
1362	 62.79	0	1502929..1503315	+	128	75675561	rplV	Nwi_1369	-	50S ribosomal protein L22
1363	 62.64	0	1503334..1504029	+	231	75675562	rpsC	Nwi_1370	-	30S ribosomal protein S3
1364	 67.87	+1	1504109..1504522	+	137	75675563	rplP	Nwi_1371	-	50S ribosomal protein L16
1365	 61.35	0	1504528..1504734	+	68	75675564	-	Nwi_1372	-	50S ribosomal protein L29
1366	 57.43	-1	1504746..1504994	+	82	75675565	rpsQ	Nwi_1373	-	30S ribosomal protein S17
1367	 59.89	0	1505034..1505402	+	122	75675566	rplN	Nwi_1374	-	50S ribosomal protein L14
1368	 62.22	0	1505402..1505716	+	104	75675567	rplX	Nwi_1375	-	50S ribosomal protein L24
1369	 60.22	0	1505709..1506266	+	185	75675568	rplE	Nwi_1376	-	50S ribosomal protein L5
1370	 62.09	0	1506310..1506615	+	101	75675569	rpsN	Nwi_1377	-	30S ribosomal protein S14
1371	 59.15	0	1506629..1507027	+	132	75675570	rpsH	Nwi_1378	-	30S ribosomal protein S8
1372	 62.36	0	1507099..1507632	+	177	75675571	rplF	Nwi_1379	-	50S ribosomal protein L6
1373	 61.98	0	1507644..1508006	+	120	75675572	rplR	Nwi_1380	-	50S ribosomal protein L18
1374	 66.15	+1	1508065..1508640	+	191	75675573	rpsE	Nwi_1381	-	30S ribosomal protein S5
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.