IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1259	 61.25	0	1397888..1399123	-	411	75675458	-	Nwi_1266	-	secretion protein HlyD
1260	 68.34	+1	1399602..1400558	+	318	75675459	-	Nwi_1267	-	MotA/TolQ/ExbB proton channel
1261	 64.76	0	1400563..1401033	+	156	75675460	-	Nwi_1268	-	biopolymer transport protein ExbD/TolR
1262	 69.44	+1	1401035..1401826	+	263	75675461	-	Nwi_1269	-	TonB protein
1263	 58.70	-1	1401884..1402297	-	137	75675462	-	Nwi_1270	-	hypothetical protein
1264	 60.23	0	1402348..1403031	-	227	75675463	-	Nwi_1271	-	peptidase M50
1265	 62.10	0	1403252..1404193	-	313	75675464	-	Nwi_1272	-	transcription factor jumonji, jmjC
1266	 67.40	+1	1404190..1405410	-	406	75675465	-	Nwi_1273	-	hypothetical protein
1267	 65.98	0	1405861..1407318	+	485	75675466	-	Nwi_1274	-	peptidase C14, caspase catalytic subunit p20
1268	 59.32	0	1407391..1407771	+	126	75675467	-	Nwi_1275	-	hypothetical protein
1269	 65.71	0	1408519..1408935	+	138	75675468	-	Nwi_1276	-	hypothetical protein
1270	 55.41	-1	1409640..1409870	+	76	75675469	-	Nwi_1277	-	hypothetical protein
1271	 54.95	-2	1410836..1411714	+	292	75675470	-	Nwi_1278	-	ISSpo3, transposase
1272	 52.59	-2	1411753..1412427	-	224	75675471	-	Nwi_1279	-	hypothetical protein
1273	 61.25	0	1412638..1413726	+	362	75675472	recA	Nwi_1280	-	recombinase A
1274	 57.21	-1	1413844..1414266	-	140	75675473	-	Nwi_1281	-	hypothetical protein
1275	 63.96	0	1414420..1414788	-	122	75675474	-	Nwi_1282	-	transposase, IS4
1276	 61.90	0	1414803..1415201	-	132	75675475	-	Nwi_1283	-	transposase
1277	 64.22	0	1415326..1418190	-	954	75675476	-	Nwi_1284	-	glycine dehydrogenase
1278	 61.20	0	1418265..1418630	-	121	75675477	-	Nwi_1285	-	glycine cleavage system protein H
1279	 67.53	+1	1418640..1419791	-	383	75675478	-	Nwi_1286	-	glycine cleavage system aminomethyltransferase T
1280	 65.88	0	1420243..1422918	+	891	75675479	alaS	Nwi_1287	-	alanyl-tRNA synthetase
1281	 56.63	-1	1422936..1423184	-	82	75675480	-	Nwi_1288	-	hypothetical protein
1282	 61.87	0	1423630..1424004	+	124	75675481	-	Nwi_1289	-	transposase
1283	 61.84	0	1424159..1424386	+	75	75675482	-	Nwi_1290	-	IS4 family transposase
1284	 60.39	0	1424456..1425172	-	238	75675483	-	Nwi_1291	-	ISRm2011-2 transposase protein
1285	 60.38	0	1425556..1425921	+	121	75675484	-	Nwi_1292	-	ISBm1, transposase orfA
1286	 58.28	-1	1426284..1427273	-	329	75675485	-	Nwi_1293	-	integrase, catalytic region
1287	 61.63	0	1428024..1429235	-	403	75675486	-	Nwi_1294	-	isocitrate dehydrogenase
1288	 67.08	+1	1429543..1430754	+	403	75675487	-	Nwi_1295	-	RNA methyltransferase TrmH, group 1
1289	 58.68	-1	1430821..1431771	-	316	75675488	-	Nwi_1296	-	integrase, catalytic region
1290	 60.38	0	1432233..1432598	-	121	75675489	-	Nwi_1297	-	ISBm1, transposase orfA
1291	 65.76	0	1433530..1433859	+	109	75675490	-	Nwi_1298	-	transposase IS3/IS911
1292	 61.88	0	1433856..1434836	+	326	75675491	-	Nwi_1299	-	helix-turn-helix, Fis-type
1293	 48.91	-2	1434849..1435259	+	136	75675492	-	Nwi_1300	-	hypothetical protein
1294	 63.39	0	1435334..1435912	-	192	75675493	-	Nwi_1301	-	hypothetical protein
1295	 59.71	0	1436341..1436829	+	162	75675494	-	Nwi_1302	-	cyanate hydratase
1296	 58.72	-1	1437063..1437389	-	108	75675495	-	Nwi_1303	-	hypothetical protein
1297	 60.16	0	1437734..1438501	+	255	162139848	-	Nwi_1304	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1298	 61.25	0	1438560..1438799	+	79	75675497	-	Nwi_1305	-	phosphoribosylformylglycinamidine synthase subunit PurS
1299	 65.81	0	1438812..1439513	+	233	75675498	-	Nwi_1306	-	phosphoribosylformylglycinamidine synthase I
1300	 48.97	-2	1439510..1440187	+	225	75675499	-	Nwi_1307	-	hypothetical protein
1301	 65.09	0	1440187..1442400	+	737	75675500	-	Nwi_1308	-	phosphoribosylformylglycinamidine synthase II
1302	 62.39	0	1442613..1442846	+	77	75675501	-	Nwi_1309	-	BolA-like protein
1303	 60.77	0	1442853..1443836	-	327	75675502	-	Nwi_1310	-	hypothetical protein
1304	 63.86	0	1443876..1445123	-	415	75675503	-	Nwi_1311	-	hypothetical protein
1305	 56.34	-1	1445357..1445695	+	112	75675504	-	Nwi_1312	-	glutaredoxin-like protein
1306	 58.33	-1	1445922..1446185	+	87	75675505	-	Nwi_1313	-	hypothetical protein
1307	 60.68	0	1446481..1446831	+	116	75675506	-	Nwi_1314	-	transposase
1308	 59.50	0	1446783..1447424	+	213	75675507	-	Nwi_1315	-	ISRm2011-2 transposase protein
1309	 59.06	0	1447600..1448217	-	205	75675508	rpsD	Nwi_1316	-	30S ribosomal protein S4
1310	 68.38	+1	1448526..1449341	-	271	75675509	-	Nwi_1317	-	glutamate racemase
1311	 61.65	0	1449609..1450166	-	185	75675510	-	Nwi_1318	-	hypothetical protein
1312	 60.51	0	1450578..1451048	+	156	75675511	-	Nwi_1319	-	hypothetical protein
1313	 62.26	0	1451258..1452052	+	264	75675512	-	Nwi_1320	-	rhomboid-like protein
1314	 60.84	0	1452287..1452715	+	142	75675513	-	Nwi_1321	-	hypothetical protein
1315	 61.60	0	1452808..1453182	+	124	75675514	-	Nwi_1322	-	transposase
1316	 61.76	0	1453260..1453565	+	101	75675515	-	Nwi_1323	-	ISCc1, transposase OrfB
1317	 64.95	0	1453579..1454625	-	348	75675516	-	Nwi_1324	-	patatin
1318	 64.48	0	1454862..1455911	+	349	75675517	-	Nwi_1325	-	hypothetical protein
1319	 63.56	0	1456139..1456492	-	117	75675518	-	Nwi_1326	-	hypothetical protein
1320	 63.83	0	1456759..1457676	+	305	75675519	-	Nwi_1327	-	hypothetical protein
1321	 64.69	0	1457787..1458242	-	151	75675520	-	Nwi_1328	-	nitrogen-fixing NifU-like
1322	 61.71	0	1458492..1459217	+	241	75675521	-	Nwi_1329	-	GTP cyclohydrolase I
1323	 63.47	0	1459462..1459899	+	145	75675522	hisI	Nwi_1330	-	phosphoribosyl-AMP cyclohydrolase
1324	 64.66	0	1460271..1461215	+	314	75675523	-	Nwi_1331	-	hypothetical protein
1325	 64.51	0	1461430..1463100	+	556	75675524	-	Nwi_1332	-	hypothetical protein
1326	 60.97	0	1463188..1463766	-	192	75675525	-	Nwi_1333	-	Hpt protein
1327	 59.34	0	1463778..1464323	-	181	75675526	-	Nwi_1334	-	response regulator receiver
1328	 63.61	0	1464430..1465215	-	261	75675527	ppnK	Nwi_1335	-	inorganic polyphosphate/ATP-NAD kinase
1329	 64.63	0	1465483..1465923	+	146	75675528	-	Nwi_1336	-	hypothetical protein
1330	 64.33	0	1466308..1467033	+	241	75675529	-	Nwi_1337	-	putative outer membrane protein
1331	 60.58	0	1467245..1469692	-	815	75675530	-	Nwi_1338	-	TonB-dependent siderophore receptor
1332	 64.58	0	1470031..1470990	-	319	75675531	-	Nwi_1339	-	FecR protein
1333	 64.53	0	1471052..1471612	-	186	75675532	-	Nwi_1340	-	fec I like protein
1334	 62.45	0	1472191..1472427	-	78	75675533	-	Nwi_1341	-	hypothetical protein
1335	 61.73	0	1472948..1473190	+	80	75675534	-	Nwi_1342	-	hypothetical protein
1336	 51.94	-2	1474356..1474715	-	119	75675535	-	Nwi_1343	-	PRC-barrel protein
1337	 54.69	-2	1476083..1476274	+	63	75675536	secE	Nwi_1344	-	preprotein translocase subunit SecE
1338	 60.26	0	1476304..1476834	+	176	75675537	nusG	Nwi_1345	-	transcription antitermination protein NusG
1339	 60.61	0	1477022..1477450	+	142	75675538	rplK	Nwi_1346	-	50S ribosomal protein L11
1340	 63.78	0	1477457..1478149	+	230	75675539	rplA	Nwi_1347	-	50S ribosomal protein L1
1341	 63.58	0	1478854..1479372	+	172	162139847	rplJ	Nwi_1348	-	50S ribosomal protein L10
1342	 64.55	0	1479427..1479804	+	125	75675541	rplL	Nwi_1349	-	50S ribosomal protein L7/L12
1343	 62.54	0	1480397..1484539	+	1380	75675542	rpoB	Nwi_1350	-	DNA-directed RNA polymerase subunit beta
1344	 60.79	0	1484698..1488897	+	1399	75675543	-	Nwi_1351	-	DNA-directed RNA polymerase subunit beta'
1345	 58.65	-1	1489325..1489798	-	157	75675544	-	Nwi_1352	-	hypothetical protein
1346	 58.16	-1	1489828..1490121	-	97	75675545	-	Nwi_1353	-	hypothetical protein
1347	 58.41	-1	1490173..1490499	-	108	75675546	-	Nwi_1354	-	hypothetical protein
1348	 59.87	0	1490565..1491683	+	372	75675547	-	Nwi_1355	-	hypothetical protein
1349	 57.38	-1	1491845..1492555	+	236	75675548	-	Nwi_1356	-	hypothetical protein
1350	 56.67	-1	1492643..1492882	+	79	75675549	-	Nwi_1357	-	hypothetical protein
1351	 60.38	0	1493645..1494010	+	121	75675550	-	Nwi_1358	-	ISBm1, transposase orfA
1352	 61.02	0	1495400..1495771	+	123	75675551	rpsL	Nwi_1359	-	30S ribosomal protein S12
1353	 59.87	0	1495787..1496257	+	156	75675552	-	Nwi_1360	-	30S ribosomal protein S7
1354	 60.78	0	1496290..1498362	+	690	75675553	-	Nwi_1361	-	elongation factor G
1355	 61.29	0	1498402..1499592	+	396	75675554	-	Nwi_1362	-	elongation factor Tu
1356	 58.58	-1	1499694..1500002	+	102	75675555	rpsJ	Nwi_1363	-	30S ribosomal protein S10
1357	 63.04	0	1500104..1500847	+	247	75675556	rplC	Nwi_1364	-	50S ribosomal protein L3
1358	 62.00	0	1500849..1501469	+	206	75675557	rplD	Nwi_1365	-	50S ribosomal protein L4
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.