IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
65	 65.35	0	76495..78933	-	812	75674264	pheT	Nwi_0065	-	phenylalanyl-tRNA synthetase subunit beta
66	 63.06	0	78930..80039	-	369	75674265	pheS	Nwi_0066	-	phenylalanyl-tRNA synthetase subunit alpha
67	 65.83	0	80156..80515	-	119	75674266	rplT	Nwi_0067	-	50S ribosomal protein L20
68	 58.21	-1	80581..80781	-	66	75674267	rpmI	Nwi_0068	-	50S ribosomal protein L35
69	 59.30	0	81110..81625	-	171	75674268	infC	Nwi_0069	-	translation initiation factor IF-3
70	 68.86	+1	81853..82626	+	257	75674269	-	Nwi_0070	-	hypothetical protein
71	 64.52	0	82679..85012	-	777	75674270	-	Nwi_0071	-	hypothetical protein
72	 59.74	0	85217..86920	-	567	75674271	-	Nwi_0072	-	PAS sensor protein
73	 64.79	0	87836..88846	+	336	75674272	-	Nwi_0073	-	thioredoxin-related
74	 62.96	0	88990..89664	+	224	75674273	-	Nwi_0074	-	peptidase S16
75	 59.70	0	89704..89904	+	66	75674274	-	Nwi_0075	-	hypothetical protein
76	 63.13	0	89965..90303	-	112	75674275	-	Nwi_0076	-	nitrogen regulatory protein P-II
77	 63.95	0	90530..91414	+	294	75674276	-	Nwi_0077	-	hypothetical protein
78	 64.89	0	91510..92412	-	300	75674277	-	Nwi_0078	-	acyl-CoA thioesterase
79	 68.22	+1	92582..93802	+	406	75674278	-	Nwi_0079	-	2-octaprenyl-6-methoxyphenyl hydroxylase
80	 51.75	-2	94175..94603	-	142	75674279	-	Nwi_0080	-	hypothetical protein
81	 54.01	-2	96113..97084	-	323	75674280	-	Nwi_0081	-	ISSpo8, transposase
82	 69.89	+2	97354..98625	+	423	75674281	-	Nwi_0082	-	aminotransferase, class I and II
83	 66.55	+1	98638..101139	+	833	75674282	-	Nwi_0083	-	cell division protein FtsK/SpoIIIE
84	 63.58	0	101475..102251	+	258	75674283	-	Nwi_0084	-	Outer membrane lipoprotein carrier protein LolA
85	 63.40	0	102283..103170	+	295	75674284	-	Nwi_0085	-	exodeoxyribonuclease III xth
86	 66.05	0	103274..103756	-	160	75674285	-	Nwi_0086	-	cyclic nucleotide-binding protein
87	 63.90	0	103980..104666	-	228	75674286	-	Nwi_0087	-	transcriptional regulatory protein
88	 68.95	+1	104886..105455	+	189	75674287	-	Nwi_0088	-	hypothetical protein
89	 64.59	0	105622..106296	-	224	75674288	-	Nwi_0089	-	hypothetical protein
90	 64.68	0	106293..106997	-	234	75674289	-	Nwi_0090	-	glutathione S-transferase
91	 64.89	0	107151..109802	+	883	75674290	leuS	Nwi_0091	-	leucyl-tRNA synthetase
92	 68.55	+1	109789..110373	+	194	75674291	-	Nwi_0092	-	hypothetical protein
93	 68.03	+1	110384..111412	+	342	75674292	holA	Nwi_0093	-	DNA polymerase III subunit delta
94	 65.76	0	111481..112362	-	293	75674293	-	Nwi_0094	-	ParB-like partition protein
95	 63.79	0	112660..113529	-	289	75674294	-	Nwi_0095	-	cobyrinic acid a,c-diamide synthase
96	 61.03	0	113514..114347	-	277	75674295	-	Nwi_0096	-	glucose inhibited division protein
97	 65.54	0	114370..116241	-	623	75674296	-	Nwi_0097	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
98	 63.82	0	116402..117772	-	456	75674297	trmE	Nwi_0098	-	tRNA modification GTPase TrmE
99	 63.37	0	118015..120045	+	676	75674298	-	Nwi_0099	-	hypothetical protein
100	 59.24	0	120114..121379	-	421	75674299	rho	Nwi_0100	-	transcription termination factor Rho
101	 54.85	-2	121775..122197	-	140	75674300	-	Nwi_0101	-	hypothetical protein
102	 60.62	0	122627..123469	+	280	75674301	-	Nwi_0102	-	hypothetical protein
103	 62.07	0	123476..124084	+	202	75674302	-	Nwi_0103	-	Maf-like protein
104	 60.67	0	124101..124700	+	199	75674303	coaE	Nwi_0104	-	dephospho-CoA kinase
105	 60.00	0	124822..125541	+	239	75674304	-	Nwi_0105	-	DNA polymerase III, epsilon subunit
106	 57.50	-1	125554..126033	-	159	75674305	-	Nwi_0106	-	preprotein translocase subunit SecB
107	 60.85	0	126485..127189	+	234	75674306	-	Nwi_0107	-	hypothetical protein
108	 61.70	0	127167..128675	+	502	75674307	-	Nwi_0108	-	membrane-bound lytic murein transglycosylase
109	 65.11	0	128672..129250	+	192	75674308	-	Nwi_0109	-	Smr protein/MutS2
110	 62.19	0	129419..130759	+	446	75674309	-	Nwi_0110	-	histidine kinase
111	 64.68	0	130852..131406	+	184	75674310	-	Nwi_0111	-	helix-turn-helix, Fis-type
112	 63.41	0	131536..132027	-	163	75674311	-	Nwi_0112	-	hypothetical protein
113	 61.48	0	132223..132897	+	224	75674312	-	Nwi_0113	-	beta-lactamase-like
114	 64.40	0	133009..135828	-	939	75674313	-	Nwi_0114	-	Signal transduction histidine kinase
115	 64.78	0	135988..136941	+	317	75674314	-	Nwi_0115	-	hypothetical protein
116	 63.03	0	136979..137335	+	118	75674315	-	Nwi_0116	-	hypothetical protein
117	 63.73	0	137378..138331	+	317	75674316	-	Nwi_0117	-	glutathione synthetase
118	 66.73	+1	138414..139952	+	512	75674317	-	Nwi_0118	-	Mg chelatase-related protein
119	 63.84	0	140139..142403	+	754	75674318	-	Nwi_0119	-	Signal transduction histidine kinase
120	 61.13	0	142490..143446	-	318	75674319	-	Nwi_0120	-	pantothenate kinase
121	 60.19	0	143665..143988	-	107	162139853	hisE	Nwi_0121	-	phosphoribosyl-ATP pyrophosphatase
122	 64.35	0	144067..144843	-	258	75674321	-	Nwi_0122	-	imidazole glycerol phosphate synthase subunit HisF
123	 67.48	+1	144859..145599	-	246	162139852	-	Nwi_0123	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
124	 64.67	0	145596..146246	-	216	75674323	hisH	Nwi_0124	-	imidazole glycerol phosphate synthase subunit HisH
125	 68.31	+1	146243..146791	-	182	75674324	-	Nwi_0125	-	hypothetical protein
126	 62.63	0	146794..147387	-	197	75674325	-	Nwi_0126	-	imidazoleglycerol-phosphate dehydratase
127	 62.88	0	147685..148239	+	184	75674326	-	Nwi_0127	-	ATP-dependent protease peptidase subunit
128	 66.04	0	148243..148722	+	159	75674327	-	Nwi_0128	-	GCN5-related N-acetyltransferase
129	 61.75	0	148795..150096	+	433	75674328	hslU	Nwi_0129	-	ATP-dependent protease ATP-binding subunit
130	 61.12	0	150408..151742	+	444	75674329	-	Nwi_0130	-	polyhydroxyalkanoate depolymerase
131	 62.72	0	151952..152788	+	278	75674330	-	Nwi_0131	-	hypothetical protein
132	 66.53	+1	152996..155200	-	734	75674331	-	Nwi_0132	-	penicillin-binding protein 1A
133	 64.18	0	155426..158203	-	925	75674332	-	Nwi_0133	-	PII uridylyl-transferase
134	 67.06	+1	158519..159523	+	334	75674333	hslO	Nwi_0134	-	Hsp33-like chaperonin
135	 57.56	-1	159648..160361	-	237	75674334	apaG	Nwi_0135	-	ApaG
136	 61.94	0	160453..161700	+	415	75674335	-	Nwi_0136	-	acyltransferase 3
137	 62.47	0	161697..162458	+	253	75674336	-	Nwi_0137	-	hypothetical protein
138	 66.36	+1	162455..163438	+	327	75674337	-	Nwi_0138	-	lysophospholipase L1 and related esterase
139	 65.16	0	163474..164667	-	397	75674338	-	Nwi_0139	-	O-succinylhomoserine sulfhydrylase
140	 65.67	0	164942..166048	+	368	75674339	-	Nwi_0140	-	2'-deoxycytidine 5'-triphosphate deaminase
141	 60.89	0	166460..166840	+	126	75674340	-	Nwi_0141	-	camphor resistance CrcB protein
142	 57.54	-1	167204..167488	+	94	75674341	-	Nwi_0142	-	hypothetical protein
143	 62.05	0	167648..168124	+	158	75674342	-	Nwi_0143	-	hypothetical protein
144	 60.27	0	168478..169071	+	197	75674343	-	Nwi_0144	-	electron transport protein SCO1/SenC
145	 64.52	0	169062..169712	-	216	75674344	-	Nwi_0145	-	glycosyl transferase
146	 57.79	-1	169807..170268	+	153	75674345	-	Nwi_0146	-	hypothetical protein
147	 56.94	-1	171280..172266	-	328	75674346	-	Nwi_0147	-	transposase
148	 54.76	-2	172784..173245	-	153	75674347	-	Nwi_0148	-	hypothetical protein
149	 66.96	+1	173398..174750	-	450	75674348	-	Nwi_0149	-	glycosyl transferase family protein
150	 63.52	0	174846..175766	+	306	75674349	-	Nwi_0150	-	extracellular solute-binding protein
151	 63.05	0	175870..177501	+	543	75674350	lysK	Nwi_0151	-	lysyl-tRNA synthetase
152	 67.44	+1	177645..178163	+	172	75674351	-	Nwi_0152	-	ErfK/YbiS/YcfS/YnhG
153	 57.27	-1	178339..178902	+	187	75674352	pyrE	Nwi_0153	-	orotate phosphoribosyltransferase
154	 68.24	+1	178934..179506	-	190	75674353	-	Nwi_0154	-	nuclease
155	 65.92	0	179739..180005	-	88	75674354	-	Nwi_0155	-	hypothetical protein
156	 68.44	+1	180146..181498	+	450	75674355	-	Nwi_0156	-	tRNA and rRNA cytosine-C5-methylase
157	 67.81	+1	181625..183379	+	584	75674356	-	Nwi_0157	-	heparinase II/III-like
158	 65.85	0	183485..185077	+	530	75674357	purH	Nwi_0158	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
159	 63.16	0	185184..185954	+	256	75674358	-	Nwi_0159	-	cytochrome c, class I
160	 66.38	+1	186074..187462	-	462	75674359	-	Nwi_0160	-	major facilitator transporter
161	 66.67	+1	187584..189338	+	584	75674360	-	Nwi_0161	-	gamma-glutamyltranspeptidase
162	 65.41	0	189383..190732	+	449	75674361	-	Nwi_0162	-	multi anti extrusion protein MatE
163	 66.78	+1	190817..191737	+	306	75674362	-	Nwi_0163	-	2-dehydropantoate 2-reductase
164	 64.50	0	191782..192474	-	230	75674363	-	Nwi_0164	-	glutathione S-transferase
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.