IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.50   STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
41	 42.21	0	40883..41479	-	198	152989794	-	NIS_0041	-	hypothetical protein
42	 43.51	+1	41489..41989	-	166	152989795	-	NIS_0042	-	hypothetical protein
43	 43.28	0	42135..43712	-	525	152989796	pckA	NIS_0043	-	phosphoenolpyruvate carboxykinase
44	 39.42	0	43777..44121	-	114	152989797	-	NIS_0044	-	ferredoxin-thioredoxin reductase, beta subunit
45	 45.28	+1	44185..44820	-	211	152989798	pcm	NIS_0045	-	protein-L-isoaspartate O-methyltransferase
46	 40.82	0	44817..45524	-	235	152989799	-	NIS_0046	-	hydrolase
47	 42.88	0	45514..46539	-	341	152989800	-	NIS_0047	-	ribonucleotide-diphosphate reductase subunit beta
48	 40.00	0	47442..47831	-	129	152989801	-	NIS_0049	-	hypothetical protein
49	 40.63	0	47913..48734	-	273	152989802	-	NIS_0050	-	oxidoreductase
50	 44.53	+1	48727..49137	-	136	152989803	-	NIS_0051	-	peptide methionine sulfoxide reductase
51	 45.08	+1	49088..49615	-	175	152989804	-	NIS_0052	-	hypothetical protein
52	 44.14	+1	49606..51975	-	789	152989805	nrdA	NIS_0053	-	ribonucleotide-diphosphate reductase subunit alpha
53	 42.75	0	51975..53312	-	445	152989806	-	NIS_0054	-	adenylosuccinate lyase
54	 38.56	0	53499..54398	+	299	152989807	-	NIS_0055	-	ribosomal large subunit pseudouridine synthase D
55	 38.52	0	54560..55504	-	314	152989808	-	NIS_0056	-	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic component
56	 41.85	0	55698..56765	-	355	152989809	-	NIS_0057	-	hypothetical protein
57	 38.01	0	56762..57295	-	177	152989810	-	NIS_0058	-	hypothetical protein
58	 44.18	+1	57292..58056	-	254	152989811	hisF	NIS_0059	-	imidazoleglycerol phosphate synthase, cyclase subunit
59	 39.49	0	58101..58766	+	221	152989812	-	NIS_0060	-	endonuclease III
60	 38.95	0	58836..59672	+	278	152989813	ksgA	NIS_0061	-	dimethyladenosine transferase
61	 42.00	0	59611..61434	+	607	152989814	-	NIS_0062	-	hypothetical protein
62	 42.92	0	61443..62402	+	319	152989815	-	NIS_0063	-	arabinose-5-phosphate isomerase
63	 40.87	0	62399..63181	+	260	152989816	-	NIS_0064	-	RNA pseudouridine synthase
64	 43.43	+1	63150..63545	+	131	152989817	-	NIS_0065	-	hypothetical protein
65	 40.99	0	63538..64713	+	391	152989818	-	NIS_0066	-	recombination factor protein RarA
66	 41.64	0	64849..65955	+	368	152989819	-	NIS_0067	-	hypothetical protein
67	 40.60	0	65989..66456	-	155	152989820	-	NIS_0068	-	hypothetical protein
68	 40.09	0	66453..67118	-	221	152989821	-	NIS_0069	-	hypothetical protein
69	 40.99	0	67115..67558	-	147	152989822	dtd	NIS_0070	-	D-tyrosyl-tRNA deacylase
70	 45.14	+1	67609..68235	+	208	152989823	-	NIS_0071	-	phosphoribosyltransferase
71	 41.09	0	68236..68880	-	214	152989824	-	NIS_0072	-	MarC family multiple antibiotic resistance protein
72	 40.76	0	68987..69592	+	201	152989825	-	NIS_0073	-	TetR family transcriptional regulator
73	 38.92	0	69589..70860	+	423	152989826	-	NIS_0074	-	hypothetical protein
74	 42.01	0	70857..71951	+	364	152989827	-	NIS_0075	-	hypothetical protein
75	 42.67	0	71955..75059	+	1034	152989828	-	NIS_0076	-	RND efflux transporter
76	 42.08	0	75069..75434	+	121	152989829	-	NIS_0077	-	hypothetical protein
77	 38.63	0	75462..76367	+	301	152989830	-	NIS_0078	-	cation efflux system protein
78	 42.88	0	76360..77061	+	233	152989831	-	NIS_0079	-	cytochrome c biogenesis protein
79	 37.43	0	77072..77437	+	121	152989832	-	NIS_0080	-	thioredoxin
80	 41.09	0	77437..77823	+	128	152989833	-	NIS_0081	-	hypothetical protein
81	 43.89	+1	77823..78182	+	119	152989834	-	NIS_0082	-	hypothetical protein
82	 39.84	0	78184..78936	+	250	152989835	-	NIS_0083	-	hypothetical protein
83	 38.21	0	78938..79183	+	81	152989836	-	NIS_0084	-	hypothetical protein
84	 37.97	0	79194..79430	+	78	152989837	-	NIS_0085	-	hypothetical protein
85	 40.55	0	79427..80590	+	387	152989838	-	NIS_0086	-	voltage-gated chloride channel
86	 40.40	0	80718..81764	+	348	152989839	-	NIS_0087	-	hypothetical protein
87	 42.51	0	81768..82181	+	137	152989840	-	NIS_0088	-	hypothetical protein
88	 38.33	0	82178..82657	+	159	152989841	-	NIS_0089	-	hypothetical protein
89	 37.32	0	82635..83738	+	367	152989842	-	NIS_0090	-	hypothetical protein
90	 35.12	-1	83719..84165	+	148	152989843	-	NIS_0091	-	hypothetical protein
91	 36.53	0	84165..85259	+	364	152989844	-	NIS_0092	-	hypothetical protein
92	 42.37	0	85261..85581	+	106	152989845	-	NIS_0093	-	hypothetical protein
93	 42.42	0	85598..85828	+	76	152989846	feoA	NIS_0094	-	ferrous iron transport protein A
94	 42.24	0	85816..87936	+	706	152989847	feoB	NIS_0095	-	ferrous iron transport protein B
95	 39.45	0	87933..89159	-	408	152989848	-	NIS_0096	-	nitrous oxidase accessory protein NosD
96	 39.93	0	89282..89857	-	191	152989849	-	NIS_0097	-	hypothetical protein
97	 39.03	0	89850..90551	-	233	152989850	-	NIS_0098	-	hypothetical protein
98	 44.51	+1	90548..91540	-	330	152989851	purM	NIS_0099	-	phosphoribosylaminoimidazole synthetase
99	 41.67	0	91876..92715	+	279	152989852	speE	NIS_0100	-	spermidine synthase
100	 41.75	0	92709..93314	+	201	152989853	-	NIS_0101	-	dephospho-CoA kinase
101	 43.29	0	93301..94053	+	250	152989854	dapF	NIS_0102	-	diaminopimelate epimerase
102	 39.81	0	94047..94772	+	241	152989855	-	NIS_0103	-	Bax protein
103	 42.07	0	94781..95845	-	354	152989856	prfA	NIS_0104	-	peptide chain release factor 1
104	 40.66	0	95858..96130	-	90	152989857	rpsT	NIS_0105	-	30S ribosomal protein S20
105	 42.45	0	96235..97572	+	445	152989858	glmM	NIS_0106	-	phosphoglucosamine mutase
106	 37.96	0	97572..98003	+	143	152989859	lspA	NIS_0107	-	lipoprotein signal peptidase
107	 42.18	0	98157..99998	+	613	152989860	thrS	NIS_0108	-	threonyl-tRNA synthetase
108	 40.45	0	99995..100528	+	177	152989861	infC	NIS_0109	-	translation initiation factor IF-3
109	 42.05	0	100625..100819	+	64	152989862	rpmI	NIS_0110	-	50S ribosomal protein L35
110	 37.89	0	100898..101248	+	116	152989863	rplT	NIS_0111	-	50S ribosomal protein L20
111	 39.24	0	101273..101983	-	236	152989864	-	NIS_0112	-	ABC transporter, ATP-binding protein
112	 38.45	0	101985..103136	-	383	152989865	-	NIS_0113	-	ABC transporter, permease
113	 38.66	0	104255..105550	-	431	152989866	-	NIS_0115	-	outer membrane efflux protein
114	 34.67	-1	106047..106946	-	299	152989867	-	NIS_0117	-	two-component sensor histidine kinase
115	 36.53	0	107097..107753	-	218	152989868	-	NIS_0118	-	two-component response regulator
116	 39.24	0	108067..108489	-	140	152989869	sufE	NIS_0119	-	Fe-S cluster assembly protein SufE
117	 38.39	0	108682..110895	+	737	152989870	-	NIS_0120	-	signal transduction response regulator
118	 43.24	0	110905..111126	+	73	152989871	-	NIS_0121	-	hypothetical protein
119	 40.00	0	111390..112094	+	234	152989872	-	NIS_0122	-	Sir2 family transcription regulator
120	 41.96	0	112094..112951	+	285	152989873	-	NIS_0123	-	hypothetical protein
121	 39.88	0	113010..114200	+	396	152989874	-	NIS_0124	-	hypothetical protein
122	 41.72	0	114197..115066	-	289	152989875	-	NIS_0125	-	ribosome-associated GTPase
123	 45.84	+1	115056..116750	-	564	152989876	ilvD	NIS_0126	-	dihydroxy-acid dehydratase
124	 42.46	0	117642..118463	+	273	152989877	-	NIS_0127	-	hypothetical protein
125	 41.61	0	118453..119382	-	309	152989878	-	NIS_0128	-	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic component
126	 45.71	+1	119383..119802	-	139	152989879	-	NIS_0129	-	hypothetical protein
127	 45.93	+1	119799..120965	-	388	152989880	purT	NIS_0130	-	phosphoribosylglycinamide formyltransferase 2
128	 32.70	-1	120943..121419	-	158	152989881	-	NIS_0131	-	hypothetical protein
129	 41.44	0	121410..122063	-	217	152989882	-	NIS_0132	-	hypothetical protein
130	 45.48	+1	122143..124488	+	781	152989883	-	NIS_0133	-	hypothetical protein
131	 34.91	-1	124559..124939	+	126	152989884	-	NIS_0134	-	hypothetical protein
132	 35.53	-1	125081..126949	+	622	152989885	-	NIS_0135	-	hypothetical protein
133	 36.40	0	127042..130206	+	1054	152989886	-	NIS_0136	-	hypothetical protein
134	 40.96	0	130692..131150	+	152	152989887	-	NIS_0137	-	hypothetical protein
135	 45.07	+1	131180..131392	-	70	152989888	rpsU	NIS_0138	-	30S ribosomal protein S21
136	 35.16	-1	131444..131827	-	127	152989889	-	NIS_0139	-	nucleotidyltransferase, substrate-binding protein
137	 30.33	-2	131814..132113	-	99	152989890	-	NIS_0140	-	nucleotidyltransferase
138	 40.35	0	132228..133253	+	341	152989891	-	NIS_0141	-	cytochrome c peroxidase
139	 43.43	+1	133310..134329	+	339	152989892	tas	NIS_0142	-	aldo/keto reductase-family protein
140	 35.74	0	134507..135130	+	207	152989893	-	NIS_0143	-	hypothetical protein
39.50	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.