IslandPathversion 1.0

IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.50 STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
695	 45.54	+1	705587..706471	-	294	152990448	dapA	NIS_0699	-	dihydrodipicolinate synthase
696	 40.18	0	706471..707769	-	432	152990449	-	NIS_0700	-	M16 family peptidase
697	 41.76	0	707766..708821	-	351	152990450	pyrD	NIS_0701	-	dihydroorotate dehydrogenase 2
698	 42.11	0	708883..709965	+	360	152990451	trmA	NIS_0702	-	tRNA (uracil-5-)-methyltransferase
699	 43.99	+1	709955..711052	-	365	152990452	-	NIS_0703	-	GTP-binding protein
700	 42.60	0	711119..712597	-	492	152990453	-	NIS_0704	-	leucyl aminopeptidase
701	 39.23	0	712611..713288	-	225	152990454	-	NIS_0705	-	hypothetical protein
702	 45.33	+1	713296..714495	-	399	152990455	trpB	NIS_0706	-	tryptophan synthase subunit beta
703	 40.44	0	714495..715043	-	182	152990456	apt	NIS_0707	-	adenine phosphoribosyltransferase
704	 44.22	+1	715131..715571	-	146	152990457	rpiB	NIS_0708	-	ribose 5-phosphate isomerase B
705	 41.09	0	715573..716268	-	231	152990458	-	NIS_0709	-	peptidase M50
706	 42.43	0	716255..717100	-	281	152990459	lepB	NIS_0710	-	signal peptidase I
707	 43.93	+1	717097..717945	-	282	152990460	folD	NIS_0711	-	5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
708	 33.62	-1	718023..718367	+	114	152990461	-	NIS_0712	-	hypothetical protein
709	 41.43	0	718364..719302	+	312	152990462	citE	NIS_0713	-	citrate lyase beta chain
710	 44.64	+1	719279..719782	-	167	152990463	-	NIS_0714	-	Ni-Fe hydrogenase, small subunit HycG
711	 39.63	0	719779..721143	-	454	152990464	-	NIS_0715	-	Ni-Fe hydrogenase, large subunit HycE
712	 39.03	0	721153..722556	-	467	152990465	-	NIS_0716	-	Ni-Fe hydrogenase, membrane subunit HyfF
713	 37.93	0	722549..723136	-	195	152990466	-	NIS_0717	-	Ni-Fe hydrogenase, membrane subunit HyfE
714	 40.50	0	723138..724058	-	306	152990467	-	NIS_0718	-	Ni-Fe hydrogenase, membrane subunit HycD/HyfD
715	 39.23	0	724055..725935	-	626	152990468	-	NIS_0719	-	Ni-Fe hydrogenase, membrane subunit HycC/HyfB
716	 34.65	-1	726079..726915	-	278	152990469	-	NIS_0720	-	hypothetical protein
717	 44.63	+1	726975..728258	+	427	152990470	hemL	NIS_0721	-	glutamate-1-semialdehyde aminotransferase
718	 43.10	0	728255..728551	+	98	152990471	-	NIS_0722	-	hypothetical protein
719	 36.95	0	728548..729045	+	165	152990472	-	NIS_0723	-	hypothetical protein
720	 40.18	0	729047..730873	-	608	152990473	rpoD	NIS_0724	-	RNA polymerase sigma factor RpoD
721	 35.60	-1	731188..732246	-	352	152990474	-	NIS_0725	-	hypothetical protein
722	 41.99	0	732374..732835	+	153	152990475	leuD	NIS_0726	-	3-isopropylmalate dehydratase, small subunit
723	 43.98	+1	732873..733943	+	356	152990476	leuB	NIS_0727	-	3-isopropylmalate dehydrogenase
724	 38.00	0	733927..735105	+	392	152990477	-	NIS_0728	-	RNA nucleotidyltransferase
725	 38.47	0	735102..735938	+	278	152990478	purU	NIS_0729	-	formyltetrahydrofolate deformylase
726	 42.46	0	735938..736408	+	156	152990479	-	NIS_0730	-	tRNA/rRNA methyltransferase
727	 38.34	0	736389..736907	-	172	152990480	-	NIS_0731	-	hypothetical protein
728	 39.81	0	737072..739108	+	678	152990481	glyS	NIS_0732	-	glycyl-tRNA synthetase subunit beta
729	 42.76	0	739108..740136	+	342	152990482	-	NIS_0733	-	FAD dependent oxidoreductase
730	 38.28	0	740133..741062	+	309	152990483	hemH	NIS_0734	-	ferrochelatase
731	 41.03	0	741066..741974	+	302	152990484	-	NIS_0735	-	acetoin utilization protein
732	 37.96	0	741971..743722	+	583	152990485	-	NIS_0736	-	multidrug ABC transporter, ATP-binding protein
733	 36.98	0	743745..744155	+	136	152990486	-	NIS_0737	-	hypothetical protein
734	 36.04	0	744295..745773	+	492	152990487	-	NIS_0738	-	hypothetical protein
735	 36.85	0	745785..746324	+	179	152990488	-	NIS_0739	-	hypothetical protein
736	 36.91	0	746324..746770	+	148	152990489	-	NIS_0740	-	hypothetical protein
737	 39.47	0	746781..748148	+	455	152990490	-	NIS_0741	-	UDP-glucose 6-dehydrogenase
738	 38.63	0	750936..751256	+	106	152990491	-	NIS_0743	-	transposase
739	 40.56	0	751256..752071	+	271	152990492	-	NIS_0744	-	transposase
740	 20.04	-2	752145..752633	+	162	152990493	-	NIS_0745	-	hypothetical protein
741	 25.62	-2	754459..754821	+	120	152990494	-	NIS_0747	-	hypothetical protein
742	 27.51	-2	754757..755185	+	142	152990495	-	NIS_0748	-	hypothetical protein
743	 30.14	-2	755185..757596	+	803	152990496	-	NIS_0749	-	hypothetical protein
744	 32.89	-1	757605..759626	+	673	152990497	-	NIS_0750	-	ATP-dependent Lon-type protease
745	 37.59	0	759762..760865	-	367	152990498	-	NIS_0751	-	cell shape-determining protein RodA
746	 39.27	0	760910..761869	+	319	152990499	-	NIS_0752	-	ribosomal large subunit pseudouridine synthase D
747	 41.08	0	761820..763058	+	412	152990500	-	NIS_0753	-	fibronectin, type III
748	 37.49	0	763059..764237	+	392	152990501	-	NIS_0754	-	tRNA (guanine-N(7))-methyltransferase
749	 42.07	0	764230..764904	+	224	152990502	ftsE	NIS_0755	-	cell division ATP-binding protein FtsE
750	 34.93	-1	764891..765706	+	271	152990503	ftsX	NIS_0756	-	cell division protein FtsX
751	 35.30	-1	765703..766872	+	389	152990504	-	NIS_0757	-	M24/M37 family peptidase
752	 41.43	0	766946..767674	+	242	152990505	pyrH	NIS_0758	-	uridylate kinase
753	 37.56	0	767671..767883	+	70	152990506	-	NIS_0759	-	DNA-directed RNA polymerase, omega subunit
754	 39.59	0	767887..770028	+	713	152990507	-	NIS_0760	-	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
755	 40.42	0	770037..771236	+	399	152990508	tyrS	NIS_0761	-	tyrosyl-tRNA synthetase
756	 43.01	0	771236..772330	+	364	152990509	-	NIS_0762	-	2-nitropropane dioxygenase
757	 35.86	0	772357..773703	+	448	152990510	-	NIS_0763	-	N-acetylmuramoyl-L-alanine amidase
758	 38.37	0	773704..774120	-	138	152990511	-	NIS_0764	-	transcriptional regulator
759	 35.21	-1	774120..774545	-	141	152990512	-	NIS_0765	-	hypothetical protein
760	 40.08	0	774642..775160	-	172	152990513	ppa	NIS_0766	-	inorganic pyrophosphatase
761	 39.49	0	775211..775486	-	91	152990514	-	NIS_0767	-	hypothetical protein
762	 39.60	0	775477..776226	-	249	152990515	-	NIS_0768	-	molybdenum cofactor biosynthesis protein
763	 40.17	0	776213..776797	-	194	152990516	-	NIS_0769	-	adenylate kinase
764	 41.78	0	776811..777035	-	74	152990517	-	NIS_0770	-	ferrous iron transport protein A
765	 43.84	+1	777022..778791	-	589	152990518	aspS	NIS_0771	-	aspartyl-tRNA synthetase
766	 42.11	0	778885..779727	+	280	152990519	-	NIS_0772	-	NAD+ kinase
767	 39.70	0	779728..781251	+	507	152990520	recN	NIS_0773	-	DNA repair protein RecN
768	 38.39	0	781248..782018	+	256	152990521	-	NIS_0774	-	TatD family hydrolase
769	 37.13	0	782038..783249	+	403	152990522	-	NIS_0775	-	membrane-bound lytic murein transglycosylase D
770	 42.40	0	783233..784015	+	260	152990523	-	NIS_0776	-	hypothetical protein
771	 41.19	0	784008..784580	+	190	152990524	-	NIS_0777	-	imidazoleglycerol-phosphate dehydratase
772	 40.12	0	784577..785077	+	166	152990525	-	NIS_0778	-	YrbI family phosphatase
773	 33.13	-1	785078..785578	+	166	152990526	-	NIS_0779	-	hypothetical protein
774	 32.03	-1	785575..786033	+	152	152990527	-	NIS_0780	-	hypothetical protein
775	 38.26	0	786030..786638	+	202	152990528	-	NIS_0781	-	GTP-binding protein
776	 37.76	0	786610..787083	+	157	152990529	-	NIS_0782	-	acetyltransferase
777	 33.55	-1	787029..787499	+	156	152990530	-	NIS_0783	-	hypothetical protein
778	 39.43	0	787489..789276	+	595	152990531	-	NIS_0784	-	peptidoglycan glycosyltransferase
779	 42.07	0	789254..790180	-	308	152990532	-	NIS_0785	-	calcium/cation antiporter
780	 38.16	0	790191..790625	-	144	152990533	-	NIS_0786	-	hypothetical protein
781	 36.44	0	790708..792705	+	665	152990534	-	NIS_0787	-	methyl-accepting chemotaxis protein
782	 33.07	-1	792707..793465	+	252	152990535	-	NIS_0788	-	chemotaxis protein methyltransferase
783	 42.38	0	793465..794127	+	220	152990536	-	NIS_0789	-	ExsB family transcriptional regulator
784	 38.68	0	794120..795691	-	523	152990537	-	NIS_0790	-	amino acid transporter
785	 42.33	0	795684..796772	-	362	152990538	-	NIS_0791	-	C4-dicarboxylate transporter, substrate-binding protein
786	 42.65	0	796783..797931	-	382	152990539	-	NIS_0792	-	calcium/cation antiporter
787	 36.67	0	797943..798902	-	319	152990540	-	NIS_0793	-	hypothetical protein
788	 41.55	0	798899..800797	-	632	152990541	metG	NIS_0794	-	methionyl-tRNA synthetase
789	 37.88	0	800807..801004	-	65	152990542	-	NIS_0795	-	hypothetical protein
790	 42.98	0	800994..801833	-	279	152990543	fbp	NIS_0796	-	fructose-1,6-bisphosphatase
791	 39.92	0	801835..802320	-	161	152990544	-	NIS_0797	-	molybdopterin-guanine dinucleotide biosynthesis protein B
792	 35.96	0	802399..802893	+	164	152990545	-	NIS_0798	-	hypothetical protein
793	 37.93	0	802832..804418	-	528	152990546	-	NIS_0799	-	soluble lytic murein transglycosylase
794	 43.89	+1	804415..804717	-	100	152990547	-	NIS_0800	-	hypothetical protein
39.50	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.