IslandPathversion 1.0

IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.50 STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
512	 41.96	0	505363..506046	-	227	152990265	pyrF	NIS_0516	-	orotidine 5'-phosphate decarboxylase
513	 38.61	0	506097..509012	+	971	152990266	mutS	NIS_0517	-	DNA mismatch repair ATPase MutS
514	 36.03	0	509512..511809	-	765	152990267	-	NIS_0518	-	signal transduction response regulator
515	 33.14	-1	511796..512314	-	172	152990268	-	NIS_0519	-	hypothetical protein
516	 38.64	0	512311..514347	-	678	152990269	-	NIS_0520	-	hypothetical protein
517	 45.21	+1	514426..516378	-	650	152990270	acs	NIS_0521	-	acetyl-CoA synthetase
518	 34.85	-1	516371..516964	-	197	152990271	-	NIS_0522	-	DNA polymerase III, epsilon subunit
519	 36.74	0	516964..518724	-	586	152990272	-	NIS_0523	-	cyclic nucleotide binding protein
520	 41.06	0	518761..520404	-	547	152990273	-	NIS_0524	-	acetate permease
521	 35.22	-1	520401..520718	-	105	152990274	-	NIS_0525	-	hypothetical protein
522	 42.20	0	520729..522093	-	454	152990275	-	NIS_0526	-	hypothetical protein
523	 36.59	0	522162..522806	-	214	152990276	-	NIS_0527	-	two-component response regulator
524	 33.52	-1	522803..524404	-	533	152990277	-	NIS_0528	-	two-component sensor histidine kinase
525	 37.84	0	524401..524799	-	132	152990278	-	NIS_0529	-	hypothetical protein
526	 36.91	0	524867..525229	+	120	152990279	-	NIS_0530	-	histidine triad family protein
527	 43.42	+1	525219..525446	+	75	152990280	-	NIS_0531	-	hypothetical protein
528	 44.14	+1	525447..525779	+	110	152990281	-	NIS_0532	-	hypothetical protein
529	 42.70	0	525817..527769	+	650	152990282	-	NIS_0533	-	oligopeptidase A
530	 39.72	0	527758..528603	-	281	152990283	-	NIS_0534	-	hypothetical protein
531	 41.25	0	528600..530153	-	517	152990284	-	NIS_0535	-	acyl-CoA synthetase
532	 44.22	+1	530162..531373	-	403	152990285	-	NIS_0536	-	long-chain fatty acid transport protein
533	 42.35	0	531484..531993	+	169	152990286	-	NIS_0537	-	peptidyl-prolyl cis-trans isomerase
534	 42.21	0	531994..533874	+	626	152990287	-	NIS_0538	-	glutamine-dependent NAD+ synthetase
535	 40.07	0	533868..534950	+	360	152990288	-	NIS_0539	-	hypothetical protein
536	 44.74	+1	534952..535398	+	148	152990289	fabZ	NIS_0540	-	(3R)-hydroxymyristoyl-ACP dehydratase
537	 43.01	0	535398..536162	+	254	152990290	lpxA	NIS_0541	-	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam O-acyltransferase
538	 41.30	0	536171..537400	+	409	152990291	clpX	NIS_0542	-	ATP-dependent protease ATP-binding subunit
539	 45.99	+1	537410..538444	+	344	152990292	mreB	NIS_0543	-	cell shape-determining protein MreB
540	 36.80	0	538437..539186	+	249	152990293	-	NIS_0544	-	cell shape-determining protein MreC
541	 43.69	+1	539230..542484	+	1084	152990294	carB	NIS_0545	-	carbamoyl phosphate synthase large subunit
542	 37.97	0	542477..542929	+	150	152990295	-	NIS_0546	-	hypothetical protein
543	 38.48	0	542926..544053	-	375	152990296	-	NIS_0547	-	cytochrome c peroxidase
544	 41.61	0	544581..545039	-	152	152990297	-	NIS_0548	-	signal transduction sensor histidine kinase
545	 44.68	+1	545156..548602	+	1148	152990298	metH	NIS_0549	-	5-methyltetrahydrofolate--homocysteine methyltransferase
546	 35.63	0	548613..550223	+	536	152990299	-	NIS_0550	-	hypothetical protein
547	 38.41	0	550220..550849	+	209	152990300	-	NIS_0551	-	hypothetical protein
548	 40.52	0	550846..551346	+	166	152990301	btuR	NIS_0552	-	cob(I)alamin adenosyltransferase
549	 41.17	0	551383..553233	+	616	152990302	-	NIS_0553	-	TonB-dependent receptor
550	 38.77	0	553230..553781	+	183	152990303	-	NIS_0554	-	hypothetical protein
551	 43.39	+1	553778..554602	+	274	152990304	-	NIS_0555	-	UTP--glucose-1-phosphate uridylyltransferase
552	 39.52	0	554631..555131	+	166	152990305	-	NIS_0556	-	hypothetical protein
553	 42.86	0	555160..556398	+	412	152990306	pepD	NIS_0557	-	aminoacyl-histidine dipeptidase
554	 39.71	0	556395..556802	+	135	152990307	-	NIS_0558	-	hypothetical protein
555	 40.52	0	556789..557442	-	217	152990308	nth	NIS_0559	-	endonuclease III
556	 43.56	+1	557499..558212	+	237	152990309	-	NIS_0560	-	hypothetical protein
557	 39.68	0	558270..559088	+	272	152990310	-	NIS_0561	-	peptidyl-prolyl cis-trans isomerase
558	 44.48	+1	559100..560176	+	358	152990311	fbaA	NIS_0562	-	fructose-bisphosphate aldolase
559	 35.90	0	560196..561248	-	350	152990312	-	NIS_0563	-	hypothetical protein
560	 33.52	-1	561218..562279	-	353	152990313	-	NIS_0564	-	hypothetical protein
561	 35.43	-1	562344..563297	+	317	152990314	-	NIS_0565	-	hypothetical protein
562	 43.54	+1	563317..564609	+	430	152990315	hisD	NIS_0566	-	histidinol dehydrogenase
563	 36.52	0	564610..567939	+	1109	152990316	-	NIS_0567	-	hypothetical protein
564	 43.81	+1	567929..569560	+	543	152990317	-	NIS_0568	-	inorganic phosphate transporter
565	 39.05	0	569560..570801	+	413	152990318	-	NIS_0569	-	hypothetical protein
566	 41.43	0	570782..571534	+	250	152990319	-	NIS_0570	-	hypothetical protein
567	 43.10	0	571821..572465	+	214	152990320	-	NIS_0571	-	4Fe-4S ferredoxin
568	 40.04	0	572465..573388	+	307	152990321	-	NIS_0572	-	hypothetical protein
569	 43.64	+1	573400..576687	+	1095	152990322	-	NIS_0573	-	molybdopterin oxidoreductase
570	 25.77	-2	576751..577041	+	96	152990323	-	NIS_0574	-	hypothetical protein
571	 26.77	-2	577034..577414	+	126	152990324	-	NIS_0575	-	hypothetical protein
572	 38.13	0	577415..577789	-	124	152990325	-	NIS_0576	-	cytochrome c, class I
573	 37.75	0	577866..578477	+	203	152990326	-	NIS_0577	-	hypothetical protein
574	 40.28	0	578471..579535	+	354	152990327	-	NIS_0578	-	ferredoxin-like protein
575	 34.16	-1	579532..579894	+	120	152990328	-	NIS_0579	-	hypothetical protein
576	 39.49	0	580068..580538	+	156	152990329	-	NIS_0580	-	hypothetical protein
577	 34.08	-1	580535..581203	-	222	152990330	-	NIS_0581	-	phosphate transport system regulator
578	 42.48	0	581333..582349	+	338	152990331	pstS	NIS_0582	-	phosphate ABC transporter, substrate-binding protein
579	 38.65	0	582372..583763	+	463	152990332	-	NIS_0583	-	hypothetical protein
580	 42.97	0	583853..584713	+	286	152990333	pstC	NIS_0584	-	phosphate ABC transporter, permease
581	 40.58	0	584710..585537	+	275	152990334	pstA	NIS_0585	-	phosphate ABC transporter, permease
582	 41.98	0	585537..586322	+	261	152990335	pstB	NIS_0586	-	phosphate ABC transporter, ATP-binding protein
583	 36.84	0	586650..587447	-	265	152990336	-	NIS_0587	-	hypothetical protein
584	 43.50	+1	587444..588358	-	304	152990337	-	NIS_0588	-	AAA family ATPase
585	 38.25	0	588355..589431	-	358	152990338	-	NIS_0589	-	hypothetical protein
586	 38.76	0	589412..590905	-	497	152990339	-	NIS_0590	-	von Willebrand factor type A domain-containing protein
587	 42.99	0	590902..591771	-	289	152990340	-	NIS_0591	-	von Willebrand factor type A domain-containing protein
588	 43.42	+1	591768..592223	-	151	152990341	pgpA	NIS_0592	-	phosphatidylglycerophosphatase A
589	 40.47	0	592231..593421	-	396	152990342	-	NIS_0593	-	sulfate adenylyltransferase
590	 35.35	-1	593399..594289	-	296	152990343	-	NIS_0594	-	two-component response regulator
591	 41.80	0	594286..595407	-	373	152990344	-	NIS_0595	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
592	 44.19	+1	595524..596858	+	444	152990345	thiC	NIS_0596	-	thiamine biosynthesis protein ThiC
593	 45.79	+1	597130..598293	+	387	152990346	mrp	NIS_0597	-	ATP-binding protein Mrp
594	 37.05	0	598345..599151	+	268	152990347	-	NIS_0598	-	hypothetical protein
595	 29.14	-2	599148..600578	-	476	152990348	-	NIS_0599	-	hypothetical protein
596	 31.69	-2	600617..601954	-	445	152990349	-	NIS_0600	-	hypothetical protein
597	 31.83	-1	601964..602362	-	132	152990350	cheY	NIS_0601	-	chemotactic response regulator CheY
598	 33.96	-1	602371..603330	-	319	152990351	-	NIS_0602	-	chemotactic response regulator CheV
599	 31.03	-2	603340..603861	-	173	152990352	cheW	NIS_0603	-	purine-binding chemotaxis protein CheW
600	 37.98	0	603861..605882	-	673	152990353	cheA	NIS_0604	-	chemotaxis sensor histidine kinase CheA
601	 34.49	-1	605887..606231	-	114	152990354	-	NIS_0605	-	hypothetical protein
602	 34.99	-1	606401..607426	+	341	152990355	fliG	NIS_0606	-	flagellar motor switch protein FliG
603	 40.37	0	607537..608517	+	326	152990356	fliM	NIS_0607	-	flagellar motor switch protein FliM
604	 40.05	0	608510..608911	+	133	152990357	-	NIS_0608	-	flagellar motor switch protein FliN
605	 37.80	0	608915..609631	+	238	152990358	-	NIS_0609	-	flagellar basal-body rod protein FlgF
606	 42.95	0	609642..610442	+	266	152990359	flgG	NIS_0610	-	flagellar basal-body rod protein FlgG
607	 36.40	0	610630..611346	+	238	152990360	-	NIS_0611	-	flagellar protein FlgA
608	 42.35	0	611364..611984	+	206	152990361	-	NIS_0612	-	flagellar L-ring protein FlgH
609	 42.95	0	612014..613105	+	363	152990362	flgI	NIS_0613	-	flagellar P-ring protein FlgI
610	 38.65	0	613114..613395	+	93	152990363	-	NIS_0614	-	hypothetical protein
611	 42.34	0	613392..615479	+	695	152990364	flhA	NIS_0615	-	flagellar biosynthesis protein FlhA
39.50	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.