IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.50   STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
434	 37.96	0	434412..434735	-	107	152990187	-	NIS_0438	-	hypothetical protein
435	 36.00	0	434838..435737	-	299	152990188	-	NIS_0439	-	hypothetical protein
436	 40.37	0	435869..437005	-	378	152990189	-	NIS_0440	-	phage integrase family site specific recombinase
437	 33.79	-1	437498..437716	-	72	152990190	-	NIS_0441	-	hypothetical protein
438	 36.41	0	437807..438196	+	129	152990191	-	NIS_0442	-	hypothetical protein
439	 33.70	-1	438186..438458	+	90	152990192	-	NIS_0443	-	hypothetical protein
440	 36.53	0	438459..438989	-	176	152990193	-	NIS_0444	-	hypothetical protein
441	 37.84	0	439134..439688	-	184	152990194	-	NIS_0445	-	hypothetical protein
442	 38.57	0	439830..440555	-	241	152990195	-	NIS_0446	-	hypothetical protein
443	 32.84	-1	440904..441107	-	67	152990196	-	NIS_0447	-	hypothetical protein
444	 33.54	-1	441459..441932	-	157	152990197	-	NIS_0448	-	hypothetical protein
445	 42.63	0	441975..442286	-	103	152990198	-	NIS_0449	-	phage-related DNA-binding protein
446	 35.38	-1	442292..442876	-	194	152990199	-	NIS_0450	-	hypothetical protein
447	 36.76	0	442861..443181	-	106	152990200	-	NIS_0451	-	hypothetical protein
448	 45.29	+1	443174..443449	-	91	152990201	-	NIS_0452	-	hypothetical protein
449	 42.56	0	443367..444731	-	454	152990202	-	NIS_0453	-	hypothetical protein
450	 45.36	+1	444613..445410	-	265	152990203	-	NIS_0454	-	hypothetical protein
451	 46.04	+1	445412..446017	-	201	152990204	-	NIS_0455	-	hypothetical protein
452	 42.72	0	446716..446928	-	70	152990205	-	NIS_0456	-	hypothetical protein
453	 36.97	0	447016..447483	-	155	152990206	-	NIS_0457	-	hypothetical protein
454	 41.16	0	447957..448697	+	246	152990207	-	NIS_0458	-	hypothetical protein
455	 32.56	-1	449066..449455	+	129	152990208	-	NIS_0459	-	hypothetical protein
456	 37.35	0	449457..449879	+	140	152990209	-	NIS_0460	-	hypothetical protein
457	 42.74	0	450270..450758	+	162	152990210	-	NIS_0461	-	hypothetical protein
458	 43.12	0	450755..452911	+	718	152990211	-	NIS_0462	-	hypothetical protein
459	 30.35	-2	452915..453316	+	133	152990212	-	NIS_0463	-	hypothetical protein
460	 39.28	0	453319..453705	+	128	152990213	-	NIS_0464	-	phage terminase, small subunit
461	 42.69	0	453692..454888	+	398	152990214	-	NIS_0465	-	phage terminase, large subunit
462	 37.24	0	455139..456596	+	485	152990215	-	NIS_0466	-	hypothetical protein
463	 34.90	-1	456535..456789	+	84	152990216	-	NIS_0467	-	hypothetical protein
464	 38.90	0	456793..458067	-	424	152990217	-	NIS_0468	-	hypothetical protein
465	 38.19	0	458057..458530	-	157	152990218	-	NIS_0469	-	hypothetical protein
466	 39.25	0	458527..458898	-	123	152990219	-	NIS_0470	-	hypothetical protein
467	 44.05	+1	459298..459969	+	223	152990220	-	NIS_0471	-	hypothetical protein
468	 44.79	+1	459981..460940	+	319	152990221	-	NIS_0472	-	hypothetical protein
469	 44.85	+1	461153..462055	+	300	152990222	-	NIS_0473	-	hypothetical protein
470	 40.33	0	462065..462364	+	99	152990223	-	NIS_0474	-	hypothetical protein
471	 42.59	0	462412..462681	+	89	152990224	-	NIS_0475	-	hypothetical protein
472	 44.70	+1	462838..467103	+	1421	152990225	-	NIS_0476	-	hypothetical protein
473	 44.88	+1	467100..468260	+	386	152990226	-	NIS_0477	-	hypothetical protein
474	 47.45	+2	468260..468925	+	221	152990227	-	NIS_0478	-	phage-related tail protein
475	 38.93	0	468940..469350	+	136	152990228	-	NIS_0479	-	hypothetical protein
476	 35.10	-1	469347..470933	+	528	152990229	-	NIS_0480	-	hypothetical protein
477	 39.11	0	470933..471382	+	149	152990230	-	NIS_0481	-	hypothetical protein
478	 46.86	+1	472001..472318	+	105	152990231	-	NIS_0482	-	hypothetical protein
479	 40.32	0	472311..472868	+	185	152990232	-	NIS_0483	-	hypothetical protein
480	 35.95	0	473145..473603	-	152	152990233	-	NIS_0484	-	hypothetical protein
481	 37.55	0	474087..475010	-	307	152990234	-	NIS_0485	-	MoaA/NifB/PqqE family protein
482	 40.37	0	475007..476029	-	340	152990235	hemE	NIS_0486	-	uroporphyrinogen decarboxylase
483	 39.11	0	476039..476557	-	172	152990236	-	NIS_0487	-	hypothetical protein
484	 43.54	+1	476554..477582	-	342	152990237	-	NIS_0488	-	aspartate-semialdehyde dehydrogenase
485	 43.77	+1	477569..480031	-	820	152990238	gyrA	NIS_0489	-	DNA gyrase subunit A
486	 37.21	0	480368..481090	+	240	152990239	-	NIS_0490	-	Fis family transcriptional regulator
487	 32.29	-1	481073..481744	-	223	152990240	-	NIS_0491	-	hypothetical protein
488	 43.35	0	481888..483165	+	425	152990241	-	NIS_0492	-	ammonium transporter
489	 38.94	0	483176..483514	+	112	152990242	glnB	NIS_0493	-	nitrogen regulatory protein P-II
490	 35.74	0	483520..484350	-	276	152990243	-	NIS_0494	-	hypothetical protein
491	 31.14	-2	484347..484940	-	197	152990244	-	NIS_0495	-	hypothetical protein
492	 29.25	-2	484933..485544	-	203	152990245	-	NIS_0496	-	hypothetical protein
493	 35.82	0	485534..487585	-	683	152990246	-	NIS_0497	-	hypothetical protein
494	 38.44	0	487554..488885	-	443	152990247	-	NIS_0498	-	diaminopimelate decarboxylase
495	 38.79	0	488896..489903	-	335	152990248	-	NIS_0499	-	hypothetical protein
496	 40.85	0	490267..491544	+	425	152990249	-	NIS_0500	-	hypothetical protein
497	 38.60	0	491546..492058	+	170	152990250	-	NIS_0501	-	hypothetical protein
498	 37.42	0	492058..492522	+	154	152990251	-	NIS_0502	-	hypothetical protein
499	 36.98	0	492519..492902	+	127	152990252	-	NIS_0503	-	hypothetical protein
500	 39.88	0	492841..493833	-	330	152990253	-	NIS_0504	-	thiamine biosynthesis lipoprotein
501	 43.13	0	493886..495538	+	550	152990254	-	NIS_0505	-	copper resistance protein A
502	 38.47	0	495535..496176	+	213	152990255	-	NIS_0506	-	copper resistance protein B
503	 38.70	0	496186..496707	+	173	152990256	-	NIS_0507	-	transcriptional regulator
504	 42.49	0	496694..497425	+	243	152990257	ugpQ	NIS_0508	-	glycerophosphoryl diester phosphodiesterase
505	 42.34	0	497422..499065	-	547	152990258	groEL	NIS_0509	-	chaperonin GroEL
506	 36.11	0	499080..499367	-	95	152990259	groES	NIS_0510	-	co-chaperonin GroES
507	 36.23	0	499552..501033	+	493	152990260	-	NIS_0511	-	hypothetical protein
508	 39.70	0	501101..501760	+	219	152990261	-	NIS_0512	-	two-component response regulator
509	 39.04	0	501847..502074	+	75	152990262	-	NIS_0513	-	hypothetical protein
510	 35.79	0	502079..503908	-	609	152990263	-	NIS_0514	-	hypothetical protein
511	 42.26	0	504206..505012	+	268	152990264	-	NIS_0515	-	Sir2 family transcriptional regulator
512	 41.96	0	505363..506046	-	227	152990265	pyrF	NIS_0516	-	orotidine 5'-phosphate decarboxylase
513	 38.61	0	506097..509012	+	971	152990266	mutS	NIS_0517	-	DNA mismatch repair ATPase MutS
514	 36.03	0	509512..511809	-	765	152990267	-	NIS_0518	-	signal transduction response regulator
515	 33.14	-1	511796..512314	-	172	152990268	-	NIS_0519	-	hypothetical protein
516	 38.64	0	512311..514347	-	678	152990269	-	NIS_0520	-	hypothetical protein
517	 45.21	+1	514426..516378	-	650	152990270	acs	NIS_0521	-	acetyl-CoA synthetase
518	 34.85	-1	516371..516964	-	197	152990271	-	NIS_0522	-	DNA polymerase III, epsilon subunit
519	 36.74	0	516964..518724	-	586	152990272	-	NIS_0523	-	cyclic nucleotide binding protein
520	 41.06	0	518761..520404	-	547	152990273	-	NIS_0524	-	acetate permease
521	 35.22	-1	520401..520718	-	105	152990274	-	NIS_0525	-	hypothetical protein
522	 42.20	0	520729..522093	-	454	152990275	-	NIS_0526	-	hypothetical protein
523	 36.59	0	522162..522806	-	214	152990276	-	NIS_0527	-	two-component response regulator
524	 33.52	-1	522803..524404	-	533	152990277	-	NIS_0528	-	two-component sensor histidine kinase
525	 37.84	0	524401..524799	-	132	152990278	-	NIS_0529	-	hypothetical protein
526	 36.91	0	524867..525229	+	120	152990279	-	NIS_0530	-	histidine triad family protein
527	 43.42	+1	525219..525446	+	75	152990280	-	NIS_0531	-	hypothetical protein
528	 44.14	+1	525447..525779	+	110	152990281	-	NIS_0532	-	hypothetical protein
529	 42.70	0	525817..527769	+	650	152990282	-	NIS_0533	-	oligopeptidase A
530	 39.72	0	527758..528603	-	281	152990283	-	NIS_0534	-	hypothetical protein
531	 41.25	0	528600..530153	-	517	152990284	-	NIS_0535	-	acyl-CoA synthetase
532	 44.22	+1	530162..531373	-	403	152990285	-	NIS_0536	-	long-chain fatty acid transport protein
533	 42.35	0	531484..531993	+	169	152990286	-	NIS_0537	-	peptidyl-prolyl cis-trans isomerase
39.50	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.