IslandPathversion 1.0

IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.50 STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
292	 43.81	+1	289460..290452	+	330	152990045	nuoH	NIS_0296	-	NADH dehydrogenase subunit H
293	 38.89	0	290462..291073	+	203	152990046	nuoI	NIS_0297	-	NADH dehydrogenase subunit I
294	 39.82	0	291085..291639	+	184	152990047	nuoJ	NIS_0298	-	NADH dehydrogenase subunit J
295	 37.62	0	291636..291938	+	100	152990048	nuoK	NIS_0299	-	NADH dehydrogenase subunit K
296	 40.45	0	291942..293837	+	631	152990049	nuoL	NIS_0300	-	NADH dehydrogenase subunit L
297	 38.18	0	293849..295375	+	508	152990050	nuoM	NIS_0301	-	NADH dehydrogenase subunit M
298	 39.80	0	295375..296859	+	494	152990051	nuoN	NIS_0302	-	NADH dehydrogenase subunit N
299	 35.67	0	296856..297755	-	299	152990052	miaA	NIS_0303	-	tRNA delta(2)-isopentenylpyrophosphate transferase
300	 39.61	0	297799..298659	+	286	152990053	ubiA	NIS_0304	-	prenyltransferase
301	 31.05	-2	298767..300650	-	627	152990054	-	NIS_0305	-	signal transduction response regulator
302	 30.24	-2	300647..301066	-	139	152990055	-	NIS_0306	-	hypothetical protein
303	 32.85	-1	301063..302925	-	620	152990056	-	NIS_0307	-	hypothetical protein
304	 27.58	-2	303246..303575	+	109	152990057	-	NIS_0308	-	hypothetical protein
305	 35.63	0	303639..304292	+	217	152990058	-	NIS_0309	-	carbonate dehydratase
306	 37.18	0	304293..305930	+	545	152990059	-	NIS_0310	-	sulfate transporter
307	 38.65	0	306709..307893	-	394	152990060	murD	NIS_0311	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
308	 40.56	0	307893..308957	-	354	152990061	mraY	NIS_0312	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
309	 43.95	+1	309037..309780	+	247	152990062	fabG	NIS_0313	-	3-ketoacyl-(acyl-carrier-protein) reductase
310	 37.55	0	309830..310066	+	78	152990063	acpP	NIS_0314	-	acyl carrier protein ACP
311	 45.75	+1	310141..311364	+	407	152990064	fabF	NIS_0315	-	3-oxoacyl-(acyl carrier protein) synthase II
312	 45.09	+1	311367..312302	+	311	152990065	accA	NIS_0316	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
313	 37.66	0	312332..312562	-	76	152990066	-	NIS_0317	-	hypothetical protein
314	 42.36	0	312595..313779	-	394	152990067	argJ	NIS_0318	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
315	 34.31	-1	313822..314025	-	67	152990068	rpmB	NIS_0319	-	50S ribosomal protein L28
316	 42.88	0	314157..314795	+	212	152990069	rpe	NIS_0320	-	ribulose-phosphate 3-epimerase
317	 42.30	0	314797..315387	+	196	152990070	trpF	NIS_0321	-	phosphoribosylanthranilate isomerase
318	 38.75	0	315380..316210	+	276	152990071	dnaQ	NIS_0322	-	DNA polymerase III subunit epsilon
319	 42.02	0	316146..317342	-	398	152990072	-	NIS_0323	-	Na+/H+:dicarboxylate/amino acid symporter
320	 38.45	0	317315..318115	-	266	152990073	-	NIS_0324	-	hypothetical protein
321	 34.44	-1	318155..318334	-	59	152990074	-	NIS_0325	-	hypothetical protein
322	 45.12	+1	318350..319825	-	491	152990075	-	NIS_0326	-	sulfide-quinone reductase
323	 44.88	+1	319960..320496	-	178	152990076	-	NIS_0327	-	hexapaptide repeat-containing transferase
324	 42.49	0	320496..322592	-	698	152990077	ppk	NIS_0328	-	polyphosphate kinase
325	 43.24	0	322674..323309	+	211	152990078	-	NIS_0329	-	carbonate dehydratase
326	 45.40	+1	323296..325326	-	676	152990079	uvrB	NIS_0330	-	excinuclease ABC subunit B
327	 36.99	0	325395..325613	+	72	152990080	-	NIS_0331	-	hypothetical protein
328	 34.29	-1	325616..325825	+	69	152990081	-	NIS_0332	-	hypothetical protein
329	 40.09	0	325902..326360	+	152	152990082	-	NIS_0333	-	hypothetical protein
330	 41.16	0	326364..326810	+	148	152990083	-	NIS_0334	-	hypothetical protein
331	 38.98	0	326872..327225	+	117	152990084	-	NIS_0335	-	hypothetical protein
332	 43.32	0	327225..329057	+	610	152990085	priA	NIS_0336	-	primosome assembly protein PriA
333	 46.36	+1	329090..330148	+	352	152990086	ispG	NIS_0337	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
334	 44.63	+1	330152..331567	+	471	152990087	dnaB	NIS_0338	-	replicative DNA helicase
335	 37.36	0	331567..332808	+	413	152990088	-	NIS_0339	-	DNA uptake protein
336	 36.41	0	332710..333555	-	281	152990089	rbn	NIS_0340	-	ribonuclease BN
337	 45.34	+1	333815..335197	-	460	152990090	glcD	NIS_0341	-	glycolate oxidase, subunit GlcD
338	 39.42	0	335197..335886	-	229	152990091	-	NIS_0342	-	hypothetical protein
339	 43.22	0	336025..337278	+	417	152990092	-	NIS_0343	-	M24/M37 family peptidase
340	 43.23	0	337241..338584	+	447	152990093	-	NIS_0344	-	magnesium transporter
341	 41.76	0	338586..339131	+	181	152990094	-	NIS_0345	-	hypothetical protein
342	 39.20	0	339118..339594	-	158	152990095	-	NIS_0346	-	globin
343	 42.68	0	339584..340450	-	288	152990096	-	NIS_0347	-	hydrolase
344	 44.32	+1	340447..341238	-	263	152990097	-	NIS_0348	-	Mn2+/Zn2+ ABC transporter, permease
345	 40.08	0	341231..341956	-	241	152990098	-	NIS_0349	-	Mn2+/Zn2+ ABC transporter, ATP-binding protein
346	 38.25	0	341940..342773	-	277	152990099	-	NIS_0350	-	Mn2+/Zn2+ ABC transporter, substrate-binding protein
347	 42.60	0	342798..343736	-	312	152990100	-	NIS_0351	-	peptidyl-arginine deiminase family protein
348	 32.91	-1	343832..344068	+	78	152990101	-	NIS_0352	-	hypothetical protein
349	 29.49	-2	344061..344372	+	103	152990102	-	NIS_0353	-	PemK family transcriptional regulator
350	 31.19	-2	344702..345634	+	310	152990103	-	NIS_0354	-	hypothetical protein
351	 41.54	0	345677..346675	+	332	152990104	-	NIS_0355	-	alanine racemase
352	 38.67	0	346653..347027	-	124	152990105	-	NIS_0356	-	hypothetical protein
353	 37.81	0	347027..347227	-	66	152990106	-	NIS_0357	-	hypothetical protein
354	 39.56	0	347217..347762	-	181	152990107	gidB	NIS_0358	-	glucose-inhibited division protein B
355	 41.49	0	347762..348325	-	187	152990108	ribA	NIS_0359	-	GTP cyclohydrolase II
356	 46.79	+1	348386..349351	+	321	152990109	hemB	NIS_0360	-	delta-aminolevulinic acid dehydratase
357	 44.41	+1	349384..350313	+	309	152990110	-	NIS_0361	-	ornithine carbamoyltransferase
358	 39.78	0	350310..351473	+	387	152990111	-	NIS_0362	-	hypothetical protein
359	 38.55	0	351484..351981	+	165	152990112	-	NIS_0363	-	hypothetical protein
360	 44.01	+1	351978..353345	+	455	152990113	hemN	NIS_0364	-	coproporphyrinogen III oxidase
361	 40.03	0	353342..355537	+	731	152990114	-	NIS_0365	-	hypothetical protein
362	 39.99	0	355534..358101	+	855	152990115	-	NIS_0366	-	ATP-dependent DNA helicase UvrD
363	 41.41	0	358104..359378	+	424	152990116	-	NIS_0367	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
364	 40.49	0	359432..360172	+	246	152990117	-	NIS_0368	-	carbonate dehydratase
365	 36.26	0	360182..361684	+	500	152990118	-	NIS_0369	-	methyl-accepting chemotaxis protein
366	 37.21	0	361722..362546	+	274	152990119	lgt	NIS_0370	-	prolipoprotein diacylglyceryl transferase
367	 36.97	0	362666..363709	-	347	152990120	-	NIS_0371	-	hypothetical protein
368	 44.44	+1	363717..364724	-	335	152990121	ruvB	NIS_0372	-	Holliday junction DNA helicase B
369	 43.97	+1	364724..365503	-	259	152990122	panB	NIS_0373	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
370	 39.68	0	365582..366322	+	246	152990123	trpA	NIS_0374	-	tryptophan synthase, alpha chain
371	 37.05	0	366718..367659	-	313	152990124	-	NIS_0375	-	para-aminobenzoate synthase component I
372	 39.70	0	367652..368530	-	292	152990125	pyrB	NIS_0376	-	aspartate carbamoyltransferase catalytic subunit
373	 43.56	+1	368605..369093	+	162	152990126	-	NIS_0377	-	hypothetical protein
374	 39.12	0	369055..369693	-	212	152990127	-	NIS_0378	-	dethiobiotin synthetase
375	 41.16	0	369762..370055	+	97	152990128	clpS	NIS_0379	-	ATP-dependent Clp protease, adaptor protein ClpS
376	 42.51	0	370055..372244	+	729	152990129	clpA	NIS_0380	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
377	 41.88	0	372241..372930	+	229	152990130	aat	NIS_0381	-	leucyl/phenylalanyl-tRNA--protein transferase
378	 39.14	0	372962..373942	+	326	152990131	tal	NIS_0382	-	transaldolase
379	 41.54	0	373958..375139	+	393	152990132	pilT	NIS_0383	-	twitching motility protein PilT
380	 42.27	0	375205..375741	+	178	152990133	rplY	NIS_0384	-	50S ribosomal protein L25/general stress protein Ctc
381	 42.86	0	375741..376307	+	188	152990134	pth	NIS_0385	-	peptidyl-tRNA hydrolase
382	 35.47	-1	376353..377384	+	343	152990135	-	NIS_0386	-	hypothetical protein
383	 41.31	0	377428..378630	+	400	152990136	-	NIS_0387	-	diaminopimelate decarboxylase
384	 39.28	0	378627..379400	+	257	152990137	-	NIS_0388	-	HAD-superfamily hydrolase
385	 40.72	0	379400..380482	+	360	152990138	pheA	NIS_0389	-	chorismate mutase/prephenate dehydratase
386	 39.96	0	380469..381569	+	366	152990139	hisC	NIS_0390	-	histidinol-phosphate aminotransferase
387	 42.33	0	381559..383358	+	599	152990140	dxs	NIS_0391	-	1-deoxy-D-xylulose-5-phosphate synthase
388	 42.17	0	383381..383980	-	199	152990141	-	NIS_0392	-	AhpC/TSA family peroxiredoxin
389	 43.07	0	384147..385307	+	386	152990142	metK	NIS_0393	-	S-adenosylmethionine synthetase
390	 43.16	0	385366..385650	+	94	152990143	-	NIS_0394	-	4Fe-4S ferredoxin
391	 37.20	0	385755..386168	+	137	152990144	ndk	NIS_0395	-	nucleoside-diphosphate kinase
39.50	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.