IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.50   STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1733	 39.53	0	1766544..1767302	+	252	152991486	-	NIS_1746	-	hypothetical protein
1734	 39.62	0	1767316..1767633	+	105	152991487	-	NIS_1747	-	hypothetical protein
1735	 40.31	0	1767630..1768202	+	190	152991488	-	NIS_1748	-	hypothetical protein
1736	 43.21	0	1768267..1769289	+	340	152991489	-	NIS_1749	-	[pyruvate formate-lyase]-activating enzyme
1737	 45.85	+1	1769286..1770308	+	340	152991490	-	NIS_1750	-	[pyruvate formate-lyase]-activating enzyme
1738	 42.30	0	1770299..1771993	+	564	152991491	-	NIS_1751	-	phosphate:Na+ symporter
1739	 43.26	0	1771995..1772639	-	214	152991492	-	NIS_1752	-	hypothetical protein
1740	 37.17	0	1772636..1774018	-	460	152991493	-	NIS_1753	-	two-component sensor histidine kinase
1741	 42.08	0	1774012..1774674	-	220	152991494	-	NIS_1754	-	two-component response regulator
1742	 41.01	0	1774674..1775129	-	151	152991495	-	NIS_1755	-	cytochrome c
1743	 43.48	+1	1775165..1775854	-	229	152991496	-	NIS_1756	-	alcohol dehydrogenase
1744	 42.06	0	1775983..1776933	+	316	152991497	-	NIS_1757	-	nitrate/sulfonate/bicarbonate ABC transporter, substrate-binding protein
1745	 39.67	0	1776930..1779311	+	793	152991498	-	NIS_1758	-	hypothetical protein
1746	 43.46	+1	1779308..1782664	-	1118	152991499	-	NIS_1759	-	reverse gyrase
1747	 45.65	+1	1782661..1783326	-	221	152991500	-	NIS_1760	-	hypothetical protein
1748	 45.12	+1	1783390..1784271	-	293	152991501	-	NIS_1761	-	ATPase
1749	 30.00	-2	1784385..1784624	+	79	152991502	-	NIS_1762	-	hypothetical protein
1750	 37.01	0	1784617..1784970	+	117	152991503	-	NIS_1763	-	PemK family transcriptional regulator
1751	 43.70	+1	1784967..1785593	+	208	152991504	upp	NIS_1764	-	uracil phosphoribosyltransferase
1752	 39.33	0	1785590..1786123	+	177	152991505	-	NIS_1765	-	hypothetical protein
1753	 39.50	0	1786125..1786643	-	172	152991506	-	NIS_1766	-	hypothetical protein
1754	 38.75	0	1786588..1788045	-	485	152991507	-	NIS_1767	-	hypothetical protein
1755	 45.11	+1	1788035..1789240	-	401	152991508	-	NIS_1768	-	N-acetyl-L-amino acid amidohydrolase
1756	 44.44	+1	1789279..1789962	-	227	152991509	-	NIS_1769	-	hypothetical protein
1757	 38.60	0	1789944..1790114	-	56	152991510	-	NIS_1770	-	hypothetical protein
1758	 42.28	0	1790111..1792234	-	707	152991511	nrdD	NIS_1771	-	anaerobic ribonucleoside triphosphate reductase
1759	 44.46	+1	1792309..1795686	-	1125	152991512	-	NIS_1772	-	5-oxoprolinase (ATP-hydrolyzing)
1760	 43.57	+1	1795740..1797116	+	458	152991513	-	NIS_1773	-	pyruvate kinase
1761	 35.94	0	1797241..1797432	-	63	152991514	-	NIS_1774	-	hypothetical protein
1762	 34.73	-1	1797436..1797792	-	118	152991515	-	NIS_1775	-	hypothetical protein
1763	 42.40	0	1797782..1798774	-	330	152991516	-	NIS_1776	-	AsnC/Lrp family transcriptional regulator
1764	 41.84	0	1798882..1799457	+	191	152991517	-	NIS_1777	-	hypothetical protein
1765	 39.73	0	1799457..1799831	+	124	152991518	-	NIS_1778	-	hypothetical protein
1766	 38.82	0	1799834..1800289	-	151	152991519	-	NIS_1779	-	hypothetical protein
1767	 39.98	0	1800301..1801128	-	275	152991520	-	NIS_1780	-	ABC transporter, permease
1768	 40.98	0	1801125..1801595	-	156	152991521	-	NIS_1781	-	hypothetical protein
1769	 40.38	0	1801582..1802220	-	212	152991522	-	NIS_1782	-	ABC transporter, ATP-binding protein
1770	 42.21	0	1802217..1803128	-	303	152991523	-	NIS_1783	-	NapH/MauN family ferredoxin-type protein
1771	 42.17	0	1803139..1803636	-	165	152991524	-	NIS_1784	-	hypothetical protein
1772	 37.13	0	1803633..1804211	-	192	152991525	-	NIS_1785	-	hypothetical protein
1773	 44.70	+1	1804214..1804996	-	260	152991526	-	NIS_1786	-	4Fe-4S ferredoxin
1774	 38.72	0	1804993..1806291	-	432	152991527	-	NIS_1787	-	nitrous oxidase accessory protein NosD
1775	 42.33	0	1806207..1806995	-	262	152991528	-	NIS_1788	-	hypothetical protein
1776	 42.40	0	1807185..1809788	-	867	152991529	-	NIS_1789	-	nitrous-oxide reductase NosZ
1777	 45.49	+1	1810158..1810889	-	243	152991530	-	NIS_1790	-	uroporphyrin-III C-methyltransferase
1778	 37.84	0	1810907..1812037	-	376	152991531	-	NIS_1791	-	heme d1 biosynthesis protein NirF
1779	 41.58	0	1812278..1813381	-	367	152991532	-	NIS_1792	-	heme d1 biosynthesis protein NirJ
1780	 38.81	0	1813381..1815060	-	559	152991533	-	NIS_1793	-	cytochrome c, class I
1781	 43.64	+1	1815165..1816823	-	552	152991534	-	NIS_1794	-	cytochrome cd1 nitrite reductase
1782	 43.94	+1	1817089..1818549	-	486	152991535	-	NIS_1795	-	nitric-oxide reductase, large subunit
1783	 43.07	0	1818512..1819189	-	225	152991536	-	NIS_1796	-	nitric-oxide reductase, small subunit
1784	 42.34	0	1819202..1819534	-	110	152991537	-	NIS_1797	-	hypothetical protein
1785	 35.37	-1	1819690..1820328	+	212	152991538	-	NIS_1798	-	Crp/FNR family transcriptional regulator
1786	 39.71	0	1820352..1820900	+	182	152991539	-	NIS_1799	-	hypothetical protein
1787	 41.49	0	1820970..1822220	-	416	152991540	-	NIS_1800	-	hypothetical protein
1788	 40.34	0	1822310..1822837	-	175	152991541	-	NIS_1801	-	hypothetical protein
1789	 37.93	0	1822847..1823194	-	115	152991542	-	NIS_1802	-	periplasmic nitrate reductase component NapD
1790	 35.86	0	1823191..1824141	-	316	152991543	-	NIS_1803	-	periplasmic nitrate reductase component NapL
1791	 38.89	0	1824143..1824610	-	155	152991544	napF	NIS_1804	-	periplasmic nitrate reductase, ferredoxin-type protein NapF
1792	 41.58	0	1824610..1825191	-	193	152991545	-	NIS_1805	-	periplasmic nitrate reductase, small subunit
1793	 42.00	0	1825193..1826011	-	272	152991546	napH	NIS_1806	-	quinol dehydrogenase membrane component
1794	 44.82	+1	1826004..1826795	-	263	152991547	napG	NIS_1807	-	quinol dehydrogenase periplasmic component
1795	 43.40	+1	1826814..1829624	-	936	152991548	napA	NIS_1808	-	nitrate reductase
1796	 41.29	0	1829824..1830426	+	200	152991549	-	NIS_1809	-	hypothetical protein
1797	 41.37	0	1830423..1830920	-	165	152991550	-	NIS_1810	-	hypothetical protein
1798	 44.34	+1	1831135..1831443	-	102	152991551	-	NIS_1811	-	hypothetical protein
1799	 39.66	0	1831436..1832683	-	415	152991552	-	NIS_1812	-	hypothetical protein
1800	 38.79	0	1832698..1833045	-	115	152991553	-	NIS_1813	-	hypothetical protein
1801	 39.48	0	1833114..1834154	-	346	152991554	-	NIS_1814	-	ferredoxin-like protein
1802	 36.46	0	1834144..1834719	-	191	152991555	-	NIS_1815	-	hypothetical protein
1803	 37.53	0	1834820..1835224	-	134	152991556	-	NIS_1816	-	hypothetical protein
1804	 41.07	0	1835221..1836435	-	404	152991557	-	NIS_1817	-	hypothetical protein
1805	 40.60	0	1836432..1837559	-	375	152991558	-	NIS_1818	-	4Fe-4S ferredoxin
1806	 38.21	0	1840492..1841619	-	375	152991559	-	NIS_1820	-	hypothetical protein
1807	 41.45	0	1841892..1842458	+	188	152991560	-	NIS_1821	-	hypothetical protein
1808	 38.94	0	1842455..1842811	+	118	152991561	-	NIS_1822	-	hypothetical protein
1809	 43.06	0	1842821..1843858	+	345	152991562	-	NIS_1823	-	ATP-binding protein
1810	 36.20	0	1843855..1844760	-	301	152991563	-	NIS_1824	-	hypothetical protein
1811	 40.28	0	1844771..1845202	-	143	152991564	-	NIS_1825	-	hypothetical protein
1812	 37.37	0	1845199..1845942	-	247	152991565	-	NIS_1826	-	hypothetical protein
1813	 40.64	0	1845951..1847456	-	501	152991566	-	NIS_1827	-	hypothetical protein
1814	 42.40	0	1847472..1849235	-	587	152991567	-	NIS_1828	-	sulfur oxidation protein SoxB
1815	 42.80	0	1849239..1850009	-	256	152991568	-	NIS_1829	-	hypothetical protein
1816	 33.93	-1	1850013..1850348	-	111	152991569	-	NIS_1830	-	hypothetical protein
1817	 40.34	0	1850367..1850837	-	156	152991570	-	NIS_1831	-	sulfur oxidation protein SoxY
1818	 41.30	0	1850837..1851388	-	183	152991571	-	NIS_1832	-	sulfur oxidation protein SoxX
1819	 33.25	-1	1851462..1852616	-	384	152991572	-	NIS_1833	-	two-component sensor histidine kinase
1820	 35.92	0	1852606..1853262	-	218	152991573	-	NIS_1834	-	two-component response regulator
1821	 35.22	-1	1853259..1854158	-	299	152991574	-	NIS_1835	-	hypothetical protein
1822	 38.24	0	1854407..1855954	-	515	152991575	-	NIS_1836	-	hypothetical protein
1823	 38.75	0	1861883..1862602	+	239	152991576	-	NIS_1837	-	hypothetical protein
1824	 34.35	-1	1862595..1862987	+	130	152991577	-	NIS_1838	-	hypothetical protein
1825	 38.35	0	1862984..1863322	-	112	152991578	-	NIS_1839	-	hypothetical protein
1826	 37.13	0	1863310..1863993	-	227	152991579	-	NIS_1840	-	methyl transferase
1827	 38.30	0	1864058..1864399	+	113	152991580	-	NIS_1841	-	preprotein translocase subunit G
1828	 37.13	0	1864371..1865345	+	324	152991581	-	NIS_1842	-	polysaccharide deacetylase family protein
1829	 40.29	0	1865332..1865892	+	186	152991582	frr	NIS_1843	-	ribosome recycling factor
1830	 44.50	+1	1866146..1866754	+	202	152991583	-	NIS_1844	-	orotate phosphoribosyltransferase
1831	 40.04	0	1866762..1867238	+	158	152991584	-	NIS_1845	-	hypothetical protein
1832	 36.12	0	1867222..1868334	+	370	152991585	-	NIS_1846	-	nucleoside:H+ symporter
39.50	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.