IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.50   STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
116	 39.24	0	108067..108489	-	140	152989869	sufE	NIS_0119	-	Fe-S cluster assembly protein SufE
117	 38.39	0	108682..110895	+	737	152989870	-	NIS_0120	-	signal transduction response regulator
118	 43.24	0	110905..111126	+	73	152989871	-	NIS_0121	-	hypothetical protein
119	 40.00	0	111390..112094	+	234	152989872	-	NIS_0122	-	Sir2 family transcription regulator
120	 41.96	0	112094..112951	+	285	152989873	-	NIS_0123	-	hypothetical protein
121	 39.88	0	113010..114200	+	396	152989874	-	NIS_0124	-	hypothetical protein
122	 41.72	0	114197..115066	-	289	152989875	-	NIS_0125	-	ribosome-associated GTPase
123	 45.84	+1	115056..116750	-	564	152989876	ilvD	NIS_0126	-	dihydroxy-acid dehydratase
124	 42.46	0	117642..118463	+	273	152989877	-	NIS_0127	-	hypothetical protein
125	 41.61	0	118453..119382	-	309	152989878	-	NIS_0128	-	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic component
126	 45.71	+1	119383..119802	-	139	152989879	-	NIS_0129	-	hypothetical protein
127	 45.93	+1	119799..120965	-	388	152989880	purT	NIS_0130	-	phosphoribosylglycinamide formyltransferase 2
128	 32.70	-1	120943..121419	-	158	152989881	-	NIS_0131	-	hypothetical protein
129	 41.44	0	121410..122063	-	217	152989882	-	NIS_0132	-	hypothetical protein
130	 45.48	+1	122143..124488	+	781	152989883	-	NIS_0133	-	hypothetical protein
131	 34.91	-1	124559..124939	+	126	152989884	-	NIS_0134	-	hypothetical protein
132	 35.53	-1	125081..126949	+	622	152989885	-	NIS_0135	-	hypothetical protein
133	 36.40	0	127042..130206	+	1054	152989886	-	NIS_0136	-	hypothetical protein
134	 40.96	0	130692..131150	+	152	152989887	-	NIS_0137	-	hypothetical protein
135	 45.07	+1	131180..131392	-	70	152989888	rpsU	NIS_0138	-	30S ribosomal protein S21
136	 35.16	-1	131444..131827	-	127	152989889	-	NIS_0139	-	nucleotidyltransferase, substrate-binding protein
137	 30.33	-2	131814..132113	-	99	152989890	-	NIS_0140	-	nucleotidyltransferase
138	 40.35	0	132228..133253	+	341	152989891	-	NIS_0141	-	cytochrome c peroxidase
139	 43.43	+1	133310..134329	+	339	152989892	tas	NIS_0142	-	aldo/keto reductase-family protein
140	 35.74	0	134507..135130	+	207	152989893	-	NIS_0143	-	hypothetical protein
141	 44.35	+1	135134..136567	+	477	152989894	-	NIS_0144	-	ferredoxin-like protein
142	 38.14	0	136607..136960	+	117	152989895	-	NIS_0145	-	hypothetical protein
143	 42.99	0	137198..138367	+	389	152989896	-	NIS_0146	-	sulfide-quinone reductase
144	 32.43	-1	138371..138592	+	73	152989897	-	NIS_0147	-	hypothetical protein
145	 41.62	0	138589..140121	+	510	152989898	-	NIS_0148	-	cytochrome bd oxidase subunit I
146	 39.86	0	140114..141232	+	372	152989899	-	NIS_0149	-	cytochrome bd oxidase subunit II
147	 28.06	-2	141450..143306	+	618	152989900	-	NIS_0150	-	hypothetical protein
148	 40.77	0	143366..143782	+	138	152989901	-	NIS_0151	-	hypothetical protein
149	 34.76	-1	143772..144191	+	139	152989902	-	NIS_0152	-	hypothetical protein
150	 38.10	0	144206..144919	+	237	152989903	-	NIS_0153	-	hypothetical protein
151	 36.86	0	144904..145527	+	207	152989904	-	NIS_0154	-	hypothetical protein
152	 39.51	0	145524..146219	-	231	152989905	-	NIS_0155	-	hypothetical protein
153	 44.12	+1	146306..147928	+	540	152989906	pyrG	NIS_0156	-	CTP synthetase
154	 43.40	+1	147925..149493	+	522	152989907	recJ	NIS_0157	-	single-strand DNA-specific exonuclease
155	 44.31	+1	149581..151074	+	497	152989908	-	NIS_0158	-	hypothetical protein
156	 35.44	-1	151083..151319	+	78	152989909	-	NIS_0159	-	hypothetical protein
157	 42.34	0	151316..152059	-	247	152989910	-	NIS_0160	-	arginyl-tRNA-protein transferase
158	 41.08	0	152078..152374	-	98	152989911	-	NIS_0161	-	hypothetical protein
159	 38.23	0	152500..154767	+	755	152989912	-	NIS_0162	-	signal transduction response regulator
160	 44.91	+1	154739..155317	-	192	152989913	folE	NIS_0163	-	GTP cyclohydrolase I
161	 42.24	0	155416..156729	+	437	152989914	tig	NIS_0164	-	trigger factor
162	 45.18	+1	156726..157316	+	196	152989915	clpP	NIS_0165	-	ATP-dependent Clp protease proteolytic subunit
163	 44.63	+1	157313..157843	+	176	152989916	def	NIS_0166	-	peptide deformylase
164	 44.60	+1	159357..160412	-	351	152989917	-	NIS_0168	-	hypothetical protein
165	 40.20	0	160520..161437	+	305	152989918	-	NIS_0169	-	LysR family transcriptional regulator
166	 44.80	+1	161421..162815	+	464	152989919	-	NIS_0170	-	hypothetical protein
167	 38.39	0	162812..163384	+	190	152989920	purN	NIS_0171	-	phosphoribosylglycinamide formyltransferase
168	 41.31	0	163341..164606	-	421	152989921	-	NIS_0172	-	hypothetical protein
169	 40.19	0	164780..166018	-	412	152989922	-	NIS_0173	-	Na+:H+ antiporter, NapA
170	 44.87	+1	166116..166895	+	259	152989923	thiG	NIS_0174	-	thiazole synthase
171	 34.96	-1	166924..167970	+	348	152989924	-	NIS_0175	-	potassium channel protein
172	 40.65	0	168066..168434	+	122	152989925	-	NIS_0176	-	thioredoxin
173	 41.67	0	168456..169811	-	451	152989926	-	NIS_0177	-	NSS family neurotransmitter:Na(+) symporter
174	 35.92	0	169870..170835	-	321	152989927	-	NIS_0178	-	hypothetical protein
175	 39.86	0	170832..171797	-	321	152989928	-	NIS_0179	-	hypothetical protein
176	 36.30	0	171794..173611	-	605	152989929	-	NIS_0180	-	hypothetical protein
177	 38.27	0	173759..175075	-	438	152989930	-	NIS_0181	-	glucosaminyltransferase
178	 36.05	0	175069..175953	-	294	152989931	-	NIS_0182	-	hypothetical protein
179	 37.88	0	175977..178220	-	747	152989932	-	NIS_0183	-	hypothetical protein
180	 35.43	-1	178213..179550	-	445	152989933	-	NIS_0184	-	hypothetical protein
181	 39.21	0	179560..180291	-	243	152989934	-	NIS_0185	-	hypothetical protein
182	 40.06	0	180279..182567	-	762	152989935	-	NIS_0186	-	hypothetical protein
183	 39.32	0	182536..184806	-	756	152989936	-	NIS_0187	-	hypothetical protein
184	 37.92	0	184796..187453	-	885	152989937	-	NIS_0188	-	hypothetical protein
185	 37.81	0	187462..188556	-	364	152989938	-	NIS_0189	-	hypothetical protein
186	 40.87	0	188553..190118	-	521	152989939	-	NIS_0190	-	alginate biosynthesis protein Alg8
187	 39.44	0	190128..191438	-	436	152989940	-	NIS_0191	-	GDP-mannose 6-dehydrogenase
188	 36.67	0	191435..192184	-	249	152989941	-	NIS_0192	-	protein phosphatase
189	 39.88	0	192194..195217	-	1007	152989942	-	NIS_0193	-	hypothetical protein
190	 35.10	-1	195226..196977	-	583	152989943	-	NIS_0194	-	hypothetical protein
191	 38.05	0	196974..198395	-	473	152989944	-	NIS_0195	-	mannose-1-phosphate guanylyltransferase
192	 34.00	-1	199785..202319	+	844	152989945	-	NIS_0196	-	signal transduction response regulator
193	 38.68	0	202362..202847	+	161	152989946	-	NIS_0197	-	hypothetical protein
194	 43.77	+1	202804..204231	-	475	152989947	-	NIS_0198	-	hypothetical protein
195	 42.01	0	204228..204884	-	218	152989948	gph	NIS_0199	-	HAD-superfamily hydrolase
196	 38.76	0	204923..207520	-	865	152989949	-	NIS_0200	-	hypothetical protein
197	 37.75	0	207517..209193	-	558	152989950	-	NIS_0201	-	hypothetical protein
198	 41.90	0	209211..209630	+	139	152989951	-	NIS_0202	-	hypothetical protein
199	 38.21	0	209602..210093	-	163	152989952	-	NIS_0203	-	hypothetical protein
200	 42.30	0	210128..210562	-	144	152989953	-	NIS_0204	-	hypothetical protein
201	 38.54	0	210621..211427	+	268	152989954	-	NIS_0205	-	hypothetical protein
202	 41.80	0	211402..212334	-	310	152989955	-	NIS_0206	-	A/G-specific adenine glycosylase
203	 41.45	0	212340..213164	-	274	152989956	-	NIS_0207	-	hypothetical protein
204	 43.22	0	213212..213646	+	144	152989957	-	NIS_0208	-	hypothetical protein
205	 33.45	-1	213650..216286	-	878	152989958	-	NIS_0209	-	signal transduction response regulator
206	 42.98	0	216513..216875	-	120	152989959	dgkA	NIS_0210	-	diacylglycerol kinase
207	 41.92	0	216872..217861	-	329	152989960	-	NIS_0211	-	hypothetical protein
208	 39.66	0	217854..219512	-	552	152989961	dnaG	NIS_0212	-	DNA primase DnaG
209	 39.09	0	219523..220512	+	329	152989962	-	NIS_0213	-	hypothetical protein
210	 42.02	0	220490..220915	+	141	152989963	rnhA	NIS_0214	-	ribonuclease H
211	 42.58	0	220985..221665	+	226	152989964	rnc	NIS_0215	-	ribonuclease III
212	 46.00	+1	221658..222731	+	357	152989965	aroC	NIS_0216	-	chorismate synthase
213	 42.51	0	222964..224205	-	413	152989966	-	NIS_0217	-	hypothetical protein
214	 40.44	0	224216..224764	-	182	152989967	rnhB	NIS_0218	-	ribonuclease HII
215	 26.22	-2	224820..225044	+	74	152989968	-	NIS_0219	-	prevent-host-death protein
39.50	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.