IslandPathversion 1.0

IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.50 STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1450	 43.88	+1	1484570..1487500	-	976	152991203	-	NIS_1461	-	transcription-repair coupling factor
1451	 40.85	0	1487473..1488603	-	376	152991204	folC	NIS_1462	-	folylpolyglutamate synthase
1452	 43.37	0	1488600..1489097	-	165	152991205	-	NIS_1463	-	hypothetical protein
1453	 43.26	0	1489100..1491547	-	815	152991206	leuS	NIS_1464	-	leucyl-tRNA synthetase
1454	 41.85	0	1491547..1492521	-	324	152991207	secF	NIS_1465	-	preprotein translocase subunit SecF
1455	 43.44	+1	1492523..1494085	-	520	152991208	secD	NIS_1466	-	preprotein translocase subunit D
1456	 38.41	0	1494089..1494364	-	91	152991209	-	NIS_1467	-	preprotein translocase subunit YajC
1457	 39.01	0	1494363..1495631	+	422	152991210	-	NIS_1468	-	apolipoprotein N-acyltransferase
1458	 45.24	+1	1495628..1496509	+	293	152991211	cysK	NIS_1469	-	cysteine synthase A
1459	 39.67	0	1496509..1497108	+	199	152991212	-	NIS_1470	-	hypothetical protein
1460	 39.91	0	1497098..1497538	+	146	152991213	-	NIS_1471	-	hypothetical protein
1461	 38.33	0	1497535..1498434	-	299	152991214	-	NIS_1472	-	LysR family transcriptional regulator
1462	 41.54	0	1498585..1500630	+	681	152991215	-	NIS_1473	-	ATP-dependent DNA helicase UvrD
1463	 40.70	0	1500627..1501454	+	275	152991216	-	NIS_1474	-	tRNA pseudouridine synthase B
1464	 38.98	0	1501451..1502212	+	253	152991217	-	NIS_1475	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1465	 38.19	0	1502209..1502661	+	150	152991218	smpB	NIS_1476	-	SsrA-binding protein
1466	 38.18	0	1502672..1503724	+	350	152991219	-	NIS_1477	-	signal transduction response regulator
1467	 43.58	+1	1503721..1505028	+	435	152991220	-	NIS_1478	-	tRNA modifying enzyme
1468	 38.69	0	1505009..1505998	+	329	152991221	-	NIS_1479	-	tRNA-lysidine synthase
1469	 36.95	0	1505949..1506473	-	174	152991222	-	NIS_1480	-	hypothetical protein
1470	 40.10	0	1506463..1507497	-	344	152991223	-	NIS_1481	-	hypothetical protein
1471	 39.68	0	1507509..1508138	-	209	152991224	-	NIS_1482	-	hypothetical protein
1472	 41.55	0	1508144..1509445	-	433	152991225	-	NIS_1483	-	tRNA-i(6)A37 thiotransferase enzyme
1473	 37.40	0	1509442..1509687	-	81	152991226	-	NIS_1484	-	hypothetical protein
1474	 42.20	0	1509841..1510956	+	371	152991227	nusA	NIS_1485	-	transcription elongation factor NusA
1475	 40.96	0	1510960..1511916	-	318	152991228	-	NIS_1486	-	oligopeptide ABC transporter, permease
1476	 39.95	0	1512552..1513367	-	271	152991229	-	NIS_1487	-	hypothetical protein
1477	 38.98	0	1513375..1513746	-	123	152991230	-	NIS_1488	-	hypothetical protein
1478	 45.99	+1	1513823..1514644	-	273	152991231	fabI	NIS_1489	-	enoyl-(acyl carrier protein) reductase
1479	 41.63	0	1514644..1515342	-	232	152991232	tpiA	NIS_1490	-	triosephosphate isomerase
1480	 42.83	0	1515339..1516538	-	399	152991233	pgk	NIS_1491	-	phosphoglycerate kinase
1481	 44.67	+1	1516519..1517532	-	337	152991234	-	NIS_1492	-	glyceraldehyde 3-phosphate dehydrogenase
1482	 38.58	0	1517608..1518141	+	177	152991235	nadD	NIS_1493	-	nicotinate-nucleotide adenylyltransferase
1483	 41.96	0	1518119..1518454	-	111	152991236	-	NIS_1494	-	hypothetical protein
1484	 43.24	0	1518456..1520039	-	527	152991237	argS	NIS_1495	-	arginyl-tRNA synthetase
1485	 39.24	0	1520073..1520309	-	78	152991238	-	NIS_1496	-	twin arginine-targeting protein translocase
1486	 43.11	0	1520378..1521001	-	207	152991239	gmk	NIS_1497	-	guanylate kinase
1487	 41.80	0	1521004..1521960	-	318	152991240	-	NIS_1498	-	hypothetical protein
1488	 37.40	0	1522038..1522553	+	171	152991241	-	NIS_1499	-	membrane bound endonuclease
1489	 40.96	0	1522556..1522909	-	117	152991242	rplS	NIS_1500	-	50S ribosomal protein L19
1490	 40.09	0	1522899..1523579	-	226	152991243	trmD	NIS_1501	-	tRNA (guanine-N(1)-)-methyltransferase
1491	 39.27	0	1523576..1524097	-	173	152991244	-	NIS_1502	-	16S rRNA processing protein RimM
1492	 43.62	+1	1524100..1524342	-	80	152991245	-	NIS_1503	-	hypothetical protein
1493	 40.79	0	1524344..1524571	-	75	152991246	rpsP	NIS_1504	-	30S ribosomal protein S16
1494	 42.53	0	1524642..1526000	-	452	152991247	ffh	NIS_1505	-	signal recognition particle protein
1495	 41.56	0	1526075..1526803	-	242	152991248	-	NIS_1506	-	ribosomal large subunit pseudouridine synthase D
1496	 36.46	0	1526837..1527124	-	95	152991249	-	NIS_1507	-	hypothetical protein
1497	 40.14	0	1527114..1528259	-	381	152991250	kdtA	NIS_1508	-	3-deoxy-D-manno-octulosonic-acid transferase
1498	 40.06	0	1528287..1529000	-	237	152991251	-	NIS_1509	-	hypothetical protein
1499	 39.33	0	1529002..1529718	-	238	152991252	-	NIS_1510	-	hypothetical protein
1500	 45.36	+1	1529708..1530580	-	290	152991253	glyQ	NIS_1511	-	glycyl-tRNA synthetase subunit alpha
1501	 42.86	0	1530577..1530828	-	83	152991254	-	NIS_1512	-	glutaredoxin
1502	 38.06	0	1530840..1531706	-	288	152991255	-	NIS_1513	-	hypothetical protein
1503	 46.08	+1	1531690..1532199	-	169	152991256	purE	NIS_1514	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1504	 36.74	0	1532209..1532472	-	87	152991257	-	NIS_1515	-	hypothetical protein
1505	 43.22	0	1532462..1533715	-	417	152991258	-	NIS_1516	-	U32 family peptidase
1506	 39.96	0	1533720..1534202	-	160	152991259	-	NIS_1517	-	hypothetical protein
1507	 37.73	0	1534264..1535082	+	272	152991260	-	NIS_1518	-	PHP family histidinol phosphatase/hydrolase
1508	 41.01	0	1535104..1536549	-	481	152991261	glnA	NIS_1519	-	glutamine synthase
1509	 39.96	0	1536687..1538285	+	532	152991262	-	NIS_1520	-	glutathione-regulated potassium-efflux system protein
1510	 41.46	0	1538282..1540249	-	655	152991263	-	NIS_1521	-	penicillin-binding protein 1A
1511	 42.98	0	1540246..1540950	-	234	152991264	-	NIS_1522	-	ABC transporter, ATP-binding protein
1512	 40.89	0	1540947..1542005	-	352	152991265	-	NIS_1523	-	8-amino-7-oxononanoate synthase
1513	 37.55	0	1541998..1542519	-	173	152991266	-	NIS_1524	-	hypothetical protein
1514	 39.78	0	1542503..1543060	-	185	152991267	-	NIS_1525	-	Maf-like protein
1515	 45.00	+1	1543057..1543476	-	139	152991268	-	NIS_1526	-	S-adenosylmethionine decarboxylase proenzyme
1516	 40.34	0	1543488..1543958	-	156	152991269	-	NIS_1527	-	hypothetical protein
1517	 44.26	+1	1543967..1546519	-	850	152991270	alaS	NIS_1528	-	alanyl-tRNA synthetase
1518	 41.18	0	1546563..1548308	-	581	152991271	-	NIS_1529	-	cell division protein FtsI
1519	 42.18	0	1548393..1549568	+	391	152991272	ftsW	NIS_1530	-	cell division protein FtsW
1520	 41.92	0	1549553..1550554	+	333	152991273	murG	NIS_1531	-	N-acetylglucosaminyl transferase
1521	 29.53	-2	1550560..1551558	-	332	152991274	-	NIS_1532	-	hypothetical protein
1522	 39.90	0	1551568..1552389	-	273	152991275	panC	NIS_1533	-	pantoate--beta-alanine ligase
1523	 42.01	0	1552445..1553551	+	368	152991276	prfB	NIS_1534	-	peptide chain release factor 2
1524	 39.78	0	1553858..1554508	-	216	152991277	-	NIS_1535	-	ABC transporter, ATP-binding protein
1525	 41.39	0	1554648..1555565	-	305	152991278	tsf	NIS_1536	-	translation elongation factor Ts
1526	 39.18	0	1555565..1556368	-	267	152991279	rpsB	NIS_1537	-	30S ribosomal protein S2
1527	 42.46	0	1556533..1557003	-	156	152991280	-	NIS_1538	-	peroxiredoxin family protein
1528	 36.55	0	1557000..1557434	-	144	152991281	-	NIS_1539	-	hypothetical protein
1529	 31.41	-2	1557427..1558671	-	414	152991282	-	NIS_1540	-	two-component response regulator
1530	 45.01	+1	1558668..1560089	-	473	152991283	-	NIS_1541	-	aldehyde dehydrogenase
1531	 43.72	+1	1560207..1561121	+	304	152991284	ilvE	NIS_1542	-	branched-chain amino acid aminotransferase
1532	 41.79	0	1561131..1562183	+	350	152991285	-	NIS_1543	-	hypothetical protein
1533	 40.44	0	1562216..1562890	+	224	152991286	hisI	NIS_1544	-	histidine biosynthesis bifunctional protein HisI
1534	 42.62	0	1562890..1563546	+	218	152991287	-	NIS_1545	-	ribonuclease
1535	 42.30	0	1563547..1564494	-	315	152991288	-	NIS_1546	-	hypothetical protein
1536	 43.55	+1	1564504..1565844	-	446	152991289	purF	NIS_1547	-	amidophosphoribosyltransferase
1537	 43.40	+1	1565846..1566610	-	254	152991290	dapB	NIS_1548	-	dihydrodipicolinate reductase
1538	 46.79	+1	1566604..1567554	-	316	152991291	trxB	NIS_1549	-	thioredoxin reductase
1539	 38.94	0	1567671..1567991	-	106	152991292	trxA	NIS_1550	-	thioredoxin
1540	 35.10	-1	1568053..1568391	-	112	152991293	-	NIS_1551	-	hypothetical protein
1541	 42.78	0	1568391..1570433	-	680	152991294	fdhF	NIS_1552	-	formate dehydrogenase, alpha subunit
1542	 45.92	+1	1570521..1571783	-	420	152991295	-	NIS_1553	-	homoserine dehydrogenase
1543	 44.88	+1	1571780..1572991	-	403	152991296	-	NIS_1554	-	aspartate aminotransferase
1544	 36.59	0	1573002..1573799	-	265	152991297	-	NIS_1555	-	hypothetical protein
1545	 36.59	0	1573793..1574620	-	275	152991298	-	NIS_1556	-	hypothetical protein
1546	 40.20	0	1574613..1575296	-	227	152991299	-	NIS_1557	-	RNA methyltransferase
1547	 38.73	0	1575321..1576136	-	271	152991300	-	NIS_1558	-	hypothetical protein
1548	 38.31	0	1576136..1576336	-	66	152991301	rpmE	NIS_1559	-	50S ribosomal protein L31
1549	 35.05	-1	1576604..1577068	+	154	152991302	-	NIS_1560	-	hypothetical protein
39.50	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.