IslandPathversion 1.0

IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.50 STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1223	 43.21	0	1252530..1253633	-	367	152990976	obg	NIS_1232	-	GTP-binding protein Obg
1224	 43.41	+1	1253721..1253978	-	85	152990977	rpmA	NIS_1233	-	50S ribosomal protein L27
1225	 39.16	0	1253991..1254299	-	102	152990978	rplU	NIS_1234	-	50S ribosomal protein L21
1226	 42.06	0	1254362..1254739	-	125	152990979	-	NIS_1235	-	translation initiation inhibitor
1227	 43.88	+1	1255116..1255949	+	277	152990980	-	NIS_1236	-	hypothetical protein
1228	 45.02	+1	1255959..1257053	-	364	152990981	dapE	NIS_1237	-	succinyl-diaminopimelate desuccinylase
1229	 40.11	0	1257031..1257591	-	186	152990982	-	NIS_1238	-	hypothetical protein
1230	 42.98	0	1257591..1257932	-	113	152990983	-	NIS_1239	-	hypothetical protein
1231	 43.34	0	1258157..1259245	+	362	152990984	-	NIS_1240	-	hypothetical protein
1232	 38.79	0	1259258..1259587	-	109	152990985	-	NIS_1241	-	thioredoxin
1233	 43.01	0	1259565..1261745	-	726	152990986	-	NIS_1242	-	DNA/RNA helicase
1234	 41.06	0	1261793..1262530	+	245	152990987	-	NIS_1243	-	hypothetical protein
1235	 40.56	0	1262708..1263523	-	271	152990988	-	NIS_1245	-	transposase
1236	 38.32	0	1263523..1263843	-	106	152990989	-	NIS_1246	-	transposase
1237	 29.21	-2	1264433..1266178	-	581	152990990	-	NIS_1247	-	sugar epimerase/dehydratase
1238	 35.48	-1	1266156..1267226	-	356	152990991	-	NIS_1248	-	aminotransferase
1239	 33.50	-1	1267229..1267822	-	197	152990992	-	NIS_1249	-	undecaprenyl-phosphate galactose phosphotransferase
1240	 34.93	-1	1267819..1269948	-	709	152990993	-	NIS_1250	-	oligosaccharide transferase
1241	 32.83	-1	1269949..1270944	-	331	152990994	-	NIS_1251	-	glycosyl transferase
1242	 30.40	-2	1270941..1271894	-	317	152990995	-	NIS_1252	-	hypothetical protein
1243	 30.70	-2	1271891..1272952	-	353	152990996	-	NIS_1253	-	hypothetical protein
1244	 26.52	-2	1272918..1274150	-	410	152990997	-	NIS_1254	-	hypothetical protein
1245	 26.02	-2	1274147..1274830	-	227	152990998	-	NIS_1255	-	hypothetical protein
1246	 23.64	-2	1274824..1275411	-	195	152990999	-	NIS_1256	-	hypothetical protein
1247	 24.40	-2	1275408..1275866	-	152	152991000	-	NIS_1257	-	glycerol-3-phosphate cytidyltransferase
1248	 29.02	-2	1275851..1277611	-	586	152991001	-	NIS_1258	-	hypothetical protein
1249	 34.65	-1	1277592..1278728	-	378	152991002	wecB	NIS_1259	-	UDP-N-acetylglucosamine 2-epimerase
1250	 40.22	0	1278732..1279559	-	275	152991003	-	NIS_1260	-	N terminal of UDP-glucose/GDP-mannose dehydrogenase
1251	 42.30	0	1279584..1281770	-	728	152991004	-	NIS_1261	-	recombination and DNA strand exchange inhibitor protein
1252	 38.68	0	1281761..1282621	-	286	152991005	-	NIS_1262	-	adenine-specific DNA methyltransferase
1253	 36.04	0	1282611..1282979	-	122	152991006	-	NIS_1263	-	hypothetical protein
1254	 34.03	-1	1282982..1283413	-	143	152991007	-	NIS_1264	-	hypothetical protein
1255	 35.51	-1	1283410..1283685	-	91	152991008	-	NIS_1265	-	hypothetical protein
1256	 42.64	0	1283682..1284992	-	436	152991009	murC	NIS_1266	-	UDP-N-acetylmuramate--L-alanine ligase
1257	 38.42	0	1284989..1285558	-	189	152991010	-	NIS_1267	-	hypothetical protein
1258	 35.53	-1	1285534..1285851	-	105	152991011	-	NIS_1268	-	hypothetical protein
1259	 31.39	-2	1285826..1286287	-	153	152991012	-	NIS_1269	-	hypothetical protein
1260	 43.38	+1	1286269..1287393	-	374	152991013	-	NIS_1270	-	hypothetical protein
1261	 33.08	-1	1287383..1287781	-	132	152991014	-	NIS_1271	-	hypothetical protein
1262	 34.88	-1	1287765..1288022	-	85	152991015	-	NIS_1272	-	hypothetical protein
1263	 44.14	+1	1288065..1288730	-	221	152991016	-	NIS_1273	-	ThiF/MoeB/HesA family protein
1264	 42.07	0	1288727..1289527	-	266	152991017	-	NIS_1274	-	carbon-nitrogen family hydrolase
1265	 35.94	0	1289524..1289715	-	63	152991018	-	NIS_1275	-	exodeoxyribonuclease VII, small subunit
1266	 43.69	+1	1289712..1290821	-	369	152991019	-	NIS_1276	-	homoserine O-acetyltransferase
1267	 41.91	0	1290922..1292274	+	450	152991020	-	NIS_1277	-	Na+:H+ antiporter
1268	 45.40	+1	1292362..1293621	-	419	152991021	-	NIS_1278	-	O-acetylhomoserine sulfhydrylase
1269	 44.75	+1	1293618..1294826	-	402	152991022	-	NIS_1279	-	O-acetylhomoserine sulfhydrylase
1270	 46.68	+1	1294887..1296332	-	481	152991023	guaB	NIS_1280	-	inositol-5-monophosphate dehydrogenase
1271	 46.28	+1	1296344..1297672	-	442	152991024	-	NIS_1281	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1272	 45.05	+1	1297757..1300513	-	918	152991025	ileS	NIS_1282	-	isoleucyl-tRNA synthetase
1273	 39.67	0	1300613..1301701	+	362	152991026	-	NIS_1283	-	competence/damage-inducible protein
1274	 34.62	-1	1302225..1302926	+	233	152991027	-	NIS_1284	-	hypothetical protein
1275	 34.78	-1	1303119..1303601	+	160	152991028	-	NIS_1285	-	hypothetical protein
1276	 41.50	0	1303660..1304112	-	150	152991029	-	NIS_1286	-	NUDIX hydrolase
1277	 42.95	0	1304084..1305799	-	571	152991030	-	NIS_1287	-	family X DNA polymerase IV
1278	 37.39	0	1306027..1306692	+	221	152991031	-	NIS_1288	-	two-component response regulator
1279	 36.74	0	1306670..1307842	+	390	152991032	-	NIS_1289	-	two-component sensor histidine kinase
1280	 32.42	-1	1307830..1308159	+	109	152991033	-	NIS_1290	-	hypothetical protein
1281	 38.27	0	1308219..1308542	+	107	152991034	-	NIS_1291	-	hypothetical protein
1282	 46.00	+1	1308574..1308873	+	99	152991035	-	NIS_1292	-	cytochrome c, class I
1283	 42.36	0	1308896..1309327	-	143	152991036	-	NIS_1293	-	thioredoxin
1284	 40.34	0	1309409..1309879	+	156	152991037	-	NIS_1294	-	hypothetical protein
1285	 44.86	+1	1310096..1311310	+	404	152991038	-	NIS_1295	-	saccharopine dehydrogenase (NAD+, L-lysine forming)
1286	 37.71	0	1311307..1312083	+	258	152991039	-	NIS_1296	-	hypothetical protein
1287	 44.04	+1	1312070..1313218	+	382	152991040	-	NIS_1297	-	carboxynorspermidine decarboxylase
1288	 40.81	0	1313215..1313976	+	253	152991041	-	NIS_1298	-	hypothetical protein
1289	 38.75	0	1313942..1314754	-	270	152991042	-	NIS_1299	-	hypothetical protein
1290	 41.46	0	1314726..1315205	-	159	152991043	-	NIS_1300	-	hypothetical protein
1291	 35.92	0	1315254..1315601	+	115	152991044	-	NIS_1301	-	hypothetical protein
1292	 44.32	+1	1315607..1316926	-	439	152991045	-	NIS_1302	-	Na+-transporting oxaloacetate decarboxylase, beta subunit
1293	 44.94	+1	1316931..1318730	-	599	152991046	-	NIS_1303	-	Na+-transporting oxaloacetate decarboxylase, alpha subunit
1294	 37.33	0	1318743..1318967	-	74	152991047	-	NIS_1304	-	Na+-transporting oxaloacetate decarboxylase, gamma subunit
1295	 41.24	0	1319326..1319907	+	193	152991048	-	NIS_1305	-	methyltransferase
1296	 40.98	0	1319884..1320615	-	243	152991049	-	NIS_1306	-	hypothetical protein
1297	 41.50	0	1320605..1321057	-	150	152991050	-	NIS_1307	-	hypothetical protein
1298	 43.75	+1	1321123..1321746	-	207	152991051	-	NIS_1308	-	phosphoserine phosphatase
1299	 41.67	0	1321808..1322719	+	303	152991052	-	NIS_1309	-	methylenetetrahydrofolate reductase
1300	 36.91	0	1322703..1323596	+	297	152991053	-	NIS_1310	-	hypothetical protein
1301	 37.71	0	1323580..1324242	-	220	152991054	-	NIS_1311	-	hypothetical protein
1302	 42.96	0	1324253..1325260	-	335	152991055	argC	NIS_1312	-	N-acetyl-gamma-glutamyl-phosphate reductase
1303	 44.31	+1	1325257..1325748	-	163	152991056	greA	NIS_1313	-	transcription elongation factor GreA
1304	 40.23	0	1325797..1326840	+	347	152991057	lpxB	NIS_1314	-	lipid-A-disaccharide synthase
1305	 41.82	0	1326844..1327950	+	368	152991058	-	NIS_1315	-	aminotransferase
1306	 40.16	0	1327947..1328840	+	297	152991059	-	NIS_1316	-	oxidoreductase
1307	 38.56	0	1328837..1329754	+	305	152991060	-	NIS_1317	-	hypothetical protein
1308	 46.07	+1	1329788..1330564	+	258	152991061	surE	NIS_1318	-	stationary phase survival protein SurE
1309	 39.88	0	1330561..1331202	+	213	152991062	-	NIS_1319	-	hypothetical protein
1310	 36.63	0	1331537..1332052	+	171	152991063	-	NIS_1320	-	hypothetical protein
1311	 44.79	+1	1333081..1333272	-	63	152991064	-	NIS_1321	-	hypothetical protein
1312	 33.58	-1	1334364..1335959	-	531	152991065	-	NIS_1322	-	hypothetical protein
1313	 40.23	0	1335969..1336823	-	284	152991066	-	NIS_1323	-	hypothetical protein
1314	 45.14	+1	1336816..1337103	-	95	152991067	-	NIS_1324	-	hypothetical protein
1315	 39.56	0	1337084..1337308	-	74	152991068	-	NIS_1325	-	hypothetical protein
1316	 37.76	0	1337295..1337723	-	142	152991069	-	NIS_1326	-	hypothetical protein
1317	 30.85	-2	1337806..1338168	-	120	152991070	-	NIS_1327	-	hypothetical protein
1318	 38.97	0	1338315..1338509	-	64	152991071	-	NIS_1328	-	transcriptional regulator
1319	 29.82	-2	1338934..1339275	-	113	152991072	-	NIS_1329	-	hypothetical protein
1320	 36.26	0	1339309..1339581	-	90	152991073	-	NIS_1330	-	plasmid stabilization system protein
1321	 36.90	0	1339582..1339833	-	83	152991074	-	NIS_1331	-	prevent-host-death family protein
1322	 37.61	0	1339881..1341119	-	412	152991075	-	NIS_1332	-	phage integrase family site specific recombinase
39.50	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.