IslandPathversion 1.0

IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.50 STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1053	 38.31	0	1075523..1075723	-	66	152990806	thiS	NIS_1061	-	thiamine biosynthesis protein ThiS
1054	 39.78	0	1075707..1076264	-	185	152990807	-	NIS_1062	-	hypothetical protein
1055	 38.27	0	1076307..1077299	-	330	152990808	-	NIS_1063	-	hypothetical protein
1056	 36.87	0	1077289..1078476	-	395	152990809	-	NIS_1064	-	hypothetical protein
1057	 40.72	0	1078469..1079659	-	396	152990810	-	NIS_1065	-	acetylornithine aminotransferase
1058	 28.93	-2	1079640..1079957	-	105	152990811	-	NIS_1066	-	hypothetical protein
1059	 29.91	-2	1079938..1080405	-	155	152990812	-	NIS_1067	-	hypothetical protein
1060	 42.18	0	1080426..1082144	-	572	152990813	-	NIS_1068	-	molybdopterin oxidoreductase
1061	 38.93	0	1082141..1082926	-	261	152990814	-	NIS_1069	-	hypothetical protein
1062	 40.03	0	1082993..1085353	+	786	152990815	-	NIS_1070	-	hypothetical protein
1063	 45.05	+1	1085354..1085797	-	147	152990816	-	NIS_1071	-	hypothetical protein
1064	 40.34	0	1085832..1087187	-	451	152990817	pncB	NIS_1072	-	nicotinate phosphoribosyltransferase
1065	 43.62	+1	1087800..1088975	-	391	152990818	-	NIS_1074	-	S-adenosylmethionine synthetase
1066	 29.88	-2	1088978..1090741	-	587	152990819	-	NIS_1075	-	two-component response regulator
1067	 31.67	-2	1090738..1094340	-	1200	152990820	-	NIS_1076	-	two-component sensor histidine kinase
1068	 38.41	0	1094538..1094852	+	104	152990821	-	NIS_1077	-	hypothetical protein
1069	 39.91	0	1094854..1095294	+	146	152990822	fur	NIS_1078	-	ferric uptake regulator
1070	 34.84	-1	1096179..1096709	-	176	152990823	-	NIS_1079	-	hypothetical protein
1071	 42.44	0	1096696..1098354	-	552	152990824	-	NIS_1080	-	ATP-dependent zinc metalloproteinase
1072	 39.09	0	1098341..1099573	-	410	152990825	-	NIS_1081	-	tRNA modifying enzyme
1073	 37.75	0	1099570..1101177	-	535	152990826	-	NIS_1082	-	mechanosensitive ion channel
1074	 39.24	0	1101171..1102220	-	349	152990827	aroB	NIS_1083	-	3-dehydroquinate synthase
1075	 39.93	0	1102269..1103678	-	469	152990828	-	NIS_1084	-	hypothetical protein
1076	 42.07	0	1103704..1104825	+	373	152990829	tgt	NIS_1085	-	queuine tRNA-ribosyltransferase
1077	 44.49	+1	1104822..1105619	+	265	152990830	pdxJ	NIS_1086	-	pyridoxal phosphate biosynthetic protein PdxJ
1078	 41.39	0	1105597..1106514	+	305	152990831	pdxA	NIS_1087	-	4-hydroxythreonine-4-phosphate dehydrogenase
1079	 43.46	+1	1106506..1106811	-	101	152990832	-	NIS_1088	-	hypothetical protein
1080	 39.22	0	1106828..1107592	-	254	152990833	-	NIS_1089	-	hypothetical protein
1081	 39.76	0	1107602..1107850	-	82	152990834	-	NIS_1090	-	hypothetical protein
1082	 41.16	0	1107932..1108429	-	165	152990835	-	NIS_1091	-	histidine triad family protein
1083	 40.84	0	1108429..1110279	-	616	152990836	-	NIS_1092	-	C4-dicarboxylate transporter, permease
1084	 39.58	0	1110397..1111821	-	474	152990837	-	NIS_1093	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase
1085	 39.28	0	1112074..1112796	-	240	152990838	-	NIS_1094	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
1086	 42.57	0	1113100..1113705	-	201	152990839	-	NIS_1095	-	hypothetical protein
1087	 44.77	+1	1113683..1114819	-	378	152990840	-	NIS_1096	-	hypothetical protein
1088	 37.41	0	1114816..1115844	-	342	152990841	ddlA	NIS_1097	-	D-alanyl-alanine synthetase A
1089	 42.16	0	1115853..1116407	-	184	152990842	ruvA	NIS_1098	-	Holliday junction DNA helicase motor protein
1090	 40.71	0	1116406..1117653	+	415	152990843	-	NIS_1099	-	hypothetical protein
1091	 40.67	0	1117685..1119088	+	467	152990844	mviN	NIS_1100	-	virulence factor MviN
1092	 42.99	0	1119072..1120469	+	465	152990845	cysS	NIS_1101	-	cysteinyl-tRNA synthetase
1093	 41.11	0	1120466..1122175	+	569	152990846	-	NIS_1102	-	multidrug ABC transporter, ATP-binding protein and permease
1094	 39.60	0	1122172..1123464	+	430	152990847	glmU	NIS_1103	-	glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase
1095	 43.02	0	1123464..1124723	+	419	152990848	dfp	NIS_1104	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1096	 40.27	0	1124716..1125393	+	225	152990849	uppS	NIS_1105	-	undecaprenyl diphosphate synthase
1097	 40.96	0	1125390..1126202	+	270	152990850	-	NIS_1106	-	type 4 prepilin peptidase
1098	 35.20	-1	1126195..1127211	+	338	152990851	-	NIS_1107	-	hypothetical protein
1099	 40.22	0	1127211..1127936	+	241	152990852	truA	NIS_1108	-	tRNA pseudouridine synthase A
1100	 44.28	+1	1127933..1128727	-	264	152990853	-	NIS_1109	-	hypothetical protein
1101	 37.63	0	1128778..1130220	+	480	152990854	-	NIS_1110	-	hypothetical protein
1102	 39.12	0	1130217..1130855	+	212	152990855	-	NIS_1111	-	membrane-associated phospholipid phosphatase
1103	 41.85	0	1130852..1131790	+	312	152990856	-	NIS_1112	-	glycosyl transferase
1104	 39.28	0	1131787..1132644	+	285	152990857	-	NIS_1113	-	hypothetical protein
1105	 41.90	0	1132627..1133817	-	396	152990858	allB	NIS_1114	-	dihydroorotase
1106	 36.39	0	1133807..1134199	-	130	152990859	-	NIS_1115	-	hypothetical protein
1107	 41.21	0	1134196..1135959	-	587	152990860	dsbD	NIS_1116	-	thiol:disulfide interchange protein DsbD
1108	 40.73	0	1136053..1137972	+	639	152990861	-	NIS_1117	-	hypothetical protein
1109	 41.52	0	1137965..1138489	+	174	152990862	msrA	NIS_1118	-	peptide methionine sulfoxide reductase
1110	 36.98	0	1138731..1139279	-	182	152990863	-	NIS_1119	-	hypothetical protein
1111	 38.10	0	1139276..1140871	-	531	152990864	-	NIS_1120	-	hypothetical protein
1112	 42.83	0	1140983..1142878	-	631	152990865	dnaK	NIS_1121	-	molecular chaperone DnaK
1113	 39.04	0	1142953..1143495	-	180	152990866	grpE	NIS_1122	-	co-chaperone protein GrpE
1114	 33.08	-1	1143506..1144282	-	258	152990867	-	NIS_1123	-	heat-inducible transcription repressor HrcA
1115	 37.41	0	1144497..1144766	-	89	152990868	rpsO	NIS_1124	-	30S ribosomal protein S15
1116	 35.31	-1	1144821..1145885	-	354	152990869	-	NIS_1125	-	hypothetical protein
1117	 43.53	+1	1146029..1146430	+	133	152990870	-	NIS_1126	-	BadM/Rrf2 family transcriptional regulator
1118	 39.50	0	1146433..1147437	+	334	152990871	-	NIS_1127	-	hypothetical protein
1119	 31.20	-2	1147438..1149267	-	609	152990872	-	NIS_1128	-	signal transduction response regulator
1120	 37.50	0	1149264..1149983	-	239	152990873	-	NIS_1129	-	methyltransferase
1121	 39.97	0	1149970..1151988	-	672	152990874	-	NIS_1130	-	hypothetical protein
1122	 40.40	0	1151979..1152770	-	263	152990875	ribF	NIS_1131	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1123	 41.70	0	1152775..1153479	-	234	152990876	-	NIS_1132	-	hemolysin A
1124	 43.17	0	1153469..1155451	-	660	152990877	ligA	NIS_1133	-	NAD-dependent DNA ligase LigA
1125	 35.13	-1	1155444..1157498	-	684	152990878	-	NIS_1134	-	hypothetical protein
1126	 37.80	0	1157491..1158363	-	290	152990879	-	NIS_1135	-	cytochrome c peroxidase
1127	 38.49	0	1158403..1159566	-	387	152990880	-	NIS_1136	-	hypothetical protein
1128	 41.16	0	1159563..1160699	-	378	152990881	-	NIS_1137	-	dihydropteroate synthase
1129	 36.30	0	1160696..1161301	-	201	152990882	-	NIS_1138	-	DNA polymerase III, delta' subunit
1130	 40.50	0	1161298..1161855	-	185	152990883	-	NIS_1139	-	hypothetical protein
1131	 45.33	+1	1161852..1163060	-	402	152990884	-	NIS_1140	-	aspartate kinase
1132	 38.68	0	1163057..1163524	-	155	152990885	-	NIS_1141	-	dinucleoside polyphosphate hydrolase
1133	 39.69	0	1163612..1164649	+	345	152990886	-	NIS_1142	-	coproporphyrinogen III oxidase
1134	 37.06	0	1164632..1165624	-	330	152990887	-	NIS_1143	-	hypothetical protein
1135	 40.74	0	1165720..1166097	+	125	152990888	-	NIS_1144	-	twin-arginine translocation system component TatB
1136	 42.65	0	1166090..1166830	+	246	152990889	tatC	NIS_1145	-	twin-arginine translocation system component TatC
1137	 42.91	0	1166830..1167852	+	340	152990890	queA	NIS_1146	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1138	 40.88	0	1167908..1168384	+	158	152990891	-	NIS_1147	-	phosphohistidine phosphatase
1139	 40.68	0	1168553..1169341	+	262	152990892	xthA	NIS_1148	-	exodeoxyribonuclease III
1140	 40.20	0	1169322..1170617	+	431	152990893	-	NIS_1149	-	voltage-gated chloride channel
1141	 38.10	0	1170611..1171051	-	146	152990894	-	NIS_1150	-	peroxide stress regulator
1142	 42.25	0	1171193..1171708	+	171	152990895	-	NIS_1151	-	bacterioferritin
1143	 39.95	0	1171705..1172565	+	286	152990896	-	NIS_1152	-	thiosulfate sulfurtransferase
1144	 39.25	0	1172569..1173075	+	168	152990897	-	NIS_1153	-	hypothetical protein
1145	 39.11	0	1173082..1174623	-	513	152990898	-	NIS_1154	-	ABC transporter
1146	 40.82	0	1174613..1174879	-	88	152990899	-	NIS_1155	-	hypothetical protein
1147	 46.79	+1	1174910..1176001	-	363	152990900	-	NIS_1156	-	peptidase S1, chymotrypsin
1148	 36.41	0	1175998..1176354	-	118	152990901	-	NIS_1157	-	hypothetical protein
1149	 45.14	+1	1176354..1177073	-	239	152990902	-	NIS_1158	-	DNA processing protein A
1150	 41.87	0	1177066..1178400	-	444	152990903	-	NIS_1159	-	sodium:sulphate symporter
1151	 39.60	0	1178410..1179414	-	334	152990904	-	NIS_1160	-	hypothetical protein
1152	 43.01	0	1179440..1180462	-	340	152990905	ilvC	NIS_1161	-	ketol-acid reductoisomerase
39.50	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.