IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.31   STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
837	 33.78	0	742126..743241	-	371	161528349	-	Nmar_0841	-	Propanoyl-CoA C-acyltransferase
838	 32.30	0	743238..744203	-	321	161528350	-	Nmar_0842	-	luciferase family protein
839	 29.45	-1	744462..745130	-	222	161528351	-	Nmar_0843	-	nucleotidyl transferase
840	 32.21	0	745167..745433	-	88	161528352	-	Nmar_0844	-	hypothetical protein
841	 39.19	+1	745568..745960	-	130	161528353	-	Nmar_0845	-	hypothetical protein
842	 34.56	0	745994..747136	-	380	161528354	-	Nmar_0846	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
843	 34.90	0	747236..747811	+	191	161528355	-	Nmar_0847	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
844	 36.64	0	747812..749020	-	402	161528356	-	Nmar_0848	-	threonine dehydratase
845	 29.63	-1	749201..750037	-	278	161528357	-	Nmar_0849	-	hypothetical protein
846	 33.81	0	750195..751031	+	278	161528358	-	Nmar_0850	-	adenylate/guanylate cyclase
847	 34.95	0	751329..751700	+	123	161528359	-	Nmar_0851	-	hypothetical protein
848	 27.65	-1	751758..752144	+	128	161528360	-	Nmar_0852	-	hypothetical protein
849	 37.47	0	752141..752551	-	136	161528361	-	Nmar_0853	-	glyoxalase/bleomycin resistance protein/dioxygenase
850	 36.99	0	752586..752804	-	72	161528362	-	Nmar_0854	-	AsnC family transcriptional regulator
851	 32.50	0	752798..753037	-	79	161528363	-	Nmar_0855	-	hypothetical protein
852	 34.08	0	753166..753432	+	88	161528364	-	Nmar_0856	-	hypothetical protein
853	 30.90	0	753628..753915	+	95	161528365	-	Nmar_0857	-	hypothetical protein
854	 31.84	0	754081..754617	-	178	161528366	-	Nmar_0858	-	ATP--cobalamin adenosyltransferase
855	 28.84	-1	754698..755231	+	177	161528367	-	Nmar_0859	-	metal dependent phosphohydrolase
856	 28.44	-1	755231..755455	+	74	161528368	-	Nmar_0860	-	hypothetical protein
857	 29.87	-1	755452..755826	-	124	161528369	-	Nmar_0861	-	hypothetical protein
858	 33.62	0	755829..756176	+	115	161528370	-	Nmar_0862	-	hypothetical protein
859	 35.29	0	756232..757455	+	407	161528371	-	Nmar_0863	-	LOR/SDH bifunctional protein
860	 32.36	0	757600..758112	+	170	161528372	-	Nmar_0864	-	hypothetical protein
861	 33.55	0	758109..759467	-	452	161528373	-	Nmar_0865	-	aminotransferase class I and II
862	 34.48	0	759537..761462	-	641	161528374	-	Nmar_0866	-	AMP-dependent synthetase and ligase
863	 38.26	+1	761506..761769	-	87	161528375	-	Nmar_0867	-	hypothetical protein
864	 34.90	0	761773..763176	-	467	161528376	-	Nmar_0868	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
865	 36.93	0	763173..764618	-	481	161528377	-	Nmar_0869	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
866	 33.33	0	764618..764884	-	88	161528378	-	Nmar_0870	-	hypothetical protein
867	 35.70	0	764895..766205	-	436	161528379	-	Nmar_0871	-	aspartyl-tRNA synthetase
868	 35.28	0	766788..767813	+	341	161528380	-	Nmar_0872	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
869	 36.09	0	767816..768613	-	265	161528381	-	Nmar_0873	-	phosphonate ABC transporter, inner membrane subunit
870	 33.69	0	768591..769421	-	276	161528382	-	Nmar_0874	-	ABC transporter related
871	 38.29	+1	769440..770528	-	362	161528383	-	Nmar_0875	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
872	 32.19	0	770616..770966	-	116	161528384	-	Nmar_0876	-	hypothetical protein
873	 31.83	0	770972..771304	-	110	161528385	-	Nmar_0877	-	putative transcriptional regulator
874	 36.35	0	771370..772098	-	242	161528386	-	Nmar_0878	-	hypothetical protein
875	 35.65	0	772111..772326	-	71	161528387	-	Nmar_0879	-	hypothetical protein
876	 31.90	0	772407..773036	+	209	161528388	-	Nmar_0880	-	hypothetical protein
877	 34.26	0	773072..773716	+	214	161528389	-	Nmar_0881	-	DSBA oxidoreductase
878	 35.52	0	773772..775052	+	426	161528390	-	Nmar_0882	-	peptide chain release factor 1
879	 36.05	0	775045..775449	-	134	161528391	-	Nmar_0883	-	histidine triad (HIT) protein
880	 38.50	+1	775557..776156	+	199	161528392	-	Nmar_0884	-	hypothetical protein
881	 33.85	0	776161..776355	-	64	161528393	-	Nmar_0885	-	hypothetical protein
882	 37.92	+1	776452..778128	+	558	161528394	-	Nmar_0886	-	dihydroxy-acid dehydratase
883	 27.93	-1	778118..778672	-	184	161528395	-	Nmar_0887	-	hypothetical protein
884	 33.19	0	778828..780228	-	466	161528396	-	Nmar_0888	-	helicase c2
885	 32.39	0	780605..780922	+	105	161528397	-	Nmar_0889	-	hypothetical protein
886	 42.68	+2	780986..781231	+	81	161528398	-	Nmar_0890	-	hypothetical protein
887	 31.84	0	781540..781806	+	88	161528399	-	Nmar_0891	-	hypothetical protein
888	 31.28	0	781999..782535	-	178	161528400	-	Nmar_0892	-	hypothetical protein
889	 36.30	0	782577..782846	-	89	161528401	-	Nmar_0893	-	hypothetical protein
890	 27.71	-1	783332..783580	-	82	161528402	-	Nmar_0894	-	hypothetical protein
891	 34.52	0	783883..784473	+	196	161528403	-	Nmar_0895	-	hypothetical protein
892	 31.21	0	784509..784838	+	109	161528404	-	Nmar_0896	-	hypothetical protein
893	 37.18	0	785551..785784	+	77	161528405	-	Nmar_0897	-	hypothetical protein
894	 33.76	0	785852..786319	+	155	161528406	-	Nmar_0898	-	hypothetical protein
895	 31.62	0	786988..787221	-	77	161528407	-	Nmar_0899	-	hypothetical protein
896	 32.76	0	787291..787641	+	116	161528408	-	Nmar_0900	-	hypothetical protein
897	 27.62	-1	788095..788304	+	69	161528409	-	Nmar_0901	-	hypothetical protein
898	 30.76	-1	788330..788872	+	180	161528410	-	Nmar_0902	-	hypothetical protein
899	 26.86	-2	788897..789313	-	138	161528411	-	Nmar_0903	-	hypothetical protein
900	 32.33	0	789419..789718	+	99	161528412	-	Nmar_0904	-	hypothetical protein
901	 35.96	0	789744..790391	-	215	161528413	-	Nmar_0905	-	hypothetical protein
902	 33.93	0	791128..791799	-	223	161528414	-	Nmar_0906	-	hypothetical protein
903	 30.85	0	791835..792236	-	133	161528415	-	Nmar_0907	-	hypothetical protein
904	 30.30	-1	792290..792487	+	65	161528416	-	Nmar_0908	-	hypothetical protein
905	 32.13	0	792948..793280	+	110	161528417	-	Nmar_0909	-	hypothetical protein
906	 29.60	-1	793511..794554	+	347	161528418	-	Nmar_0910	-	hypothetical protein
907	 35.41	0	794959..796308	+	449	161528419	-	Nmar_0911	-	anthranilate synthase
908	 34.84	0	796305..796901	+	198	161528420	-	Nmar_0912	-	glutamine amidotransferase of anthranilate synthase
909	 34.77	0	796898..797944	+	348	161528421	-	Nmar_0913	-	anthranilate phosphoribosyltransferase
910	 33.59	0	797937..798713	+	258	161528422	-	Nmar_0914	-	indole-3-glycerol-phosphate synthase
911	 36.70	0	798710..799897	+	395	161528423	-	Nmar_0915	-	tryptophan synthase subunit beta
912	 32.59	0	799884..800690	+	268	161528424	-	Nmar_0916	-	tryptophan synthase, alpha subunit
913	 29.82	-1	801081..801764	-	227	161528425	-	Nmar_0917	-	hypothetical protein
914	 36.54	0	802019..802861	-	280	161528426	-	Nmar_0918	-	hypothetical protein
915	 35.39	0	802942..804543	+	533	161528427	-	Nmar_0919	-	CTP synthetase
916	 32.94	0	804551..806068	-	505	161528428	-	Nmar_0920	-	histidine kinase
917	 33.63	0	806078..807076	-	332	161528429	-	Nmar_0921	-	NAD(+) kinase
918	 33.33	0	807118..807987	-	289	161528430	-	Nmar_0922	-	ribokinase-like domain-containing protein
919	 37.85	+1	808250..808537	+	95	161528431	-	Nmar_0923	-	30S ribosomal protein S26e
920	 34.38	0	808540..809112	-	190	161528432	-	Nmar_0924	-	CDP-alcohol phosphatidyltransferase
921	 35.73	0	809190..810065	-	291	161528433	-	Nmar_0925	-	putative agmatinase
922	 34.57	0	810069..811934	-	621	161528434	-	Nmar_0926	-	threonyl-tRNA synthetase
923	 34.82	0	811992..812327	-	111	161528435	-	Nmar_0927	-	hypothetical protein
924	 33.90	0	812404..813468	+	354	161528436	-	Nmar_0928	-	deoxyhypusine synthase-like protein
925	 38.97	+1	813482..813694	-	70	161528437	-	Nmar_0929	-	hypothetical protein
926	 37.82	+1	813793..814104	+	103	161528438	-	Nmar_0930	-	small subunit ribosomal protein S25e
927	 34.42	0	814086..814361	-	91	161528439	-	Nmar_0931	-	hypothetical protein
928	 35.70	0	814486..815034	+	182	161528440	-	Nmar_0932	-	RNA polymerase Rpb6
929	 35.24	0	815086..815400	+	104	161528441	-	Nmar_0933	-	Alba, DNA/RNA-binding protein
930	 36.21	0	815397..815813	-	138	161528442	-	Nmar_0934	-	hypothetical protein
931	 32.35	0	815847..816866	+	339	161528443	-	Nmar_0935	-	asparagine synthase
932	 37.70	0	817055..817420	-	121	161528444	-	Nmar_0936	-	hypothetical protein
933	 35.06	0	817489..818589	-	366	161528445	-	Nmar_0937	-	aldo/keto reductase
934	 35.24	0	818620..819510	-	296	161528446	-	Nmar_0938	-	UbiA prenyltransferase
935	 32.34	0	819822..820223	-	133	161528447	-	Nmar_0939	-	hypothetical protein
936	 35.74	0	820283..820573	+	96	161528448	-	Nmar_0940	-	hypothetical protein
34.31	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.