IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
809	 32.46	0	717819..718160	+	113	161528321	-	Nmar_0813	-	hypothetical protein
810	 35.69	0	718317..718655	-	112	161528322	-	Nmar_0814	-	hypothetical protein
811	 38.58	+1	718761..720380	-	539	161528323	-	Nmar_0815	-	blue (type1) copper domain-containing protein
812	 36.56	0	720467..721117	-	216	161528324	-	Nmar_0816	-	SNF7
813	 33.42	0	721209..722318	-	369	161528325	-	Nmar_0817	-	redoxin domain-containing protein
814	 31.70	0	722323..723057	-	244	161528326	-	Nmar_0818	-	cytochrome c biogenesis protein transmembrane region
815	 29.51	-1	723259..724383	-	374	161528327	-	Nmar_0819	-	8-amino-7-oxononanoate synthase
816	 30.48	-1	724551..725285	+	244	161528328	-	Nmar_0820	-	peptidase M10A and M12B matrixin and adamalysin
817	 35.37	0	725326..726306	-	326	161528329	-	Nmar_0821	-	biotin synthase
818	 34.27	0	726380..727660	-	426	161528330	-	Nmar_0822	-	aminotransferase class-III
819	 31.88	0	728011..728697	+	228	161528331	-	Nmar_0823	-	dethiobiotin synthase
820	 29.82	-1	728698..728925	-	75	161528332	-	Nmar_0824	-	hypothetical protein
821	 36.23	0	729208..730071	+	287	161528333	-	Nmar_0825	-	band 7 protein
822	 30.27	-1	730087..730380	-	97	161528334	-	Nmar_0826	-	hypothetical protein
823	 29.69	-1	730421..730969	-	182	161528335	-	Nmar_0827	-	hypothetical protein
824	 36.34	0	730969..732363	-	464	161528336	-	Nmar_0828	-	hydroxymethylglutaryl-CoA synthase
825	 36.29	0	732469..733179	-	236	161528337	-	Nmar_0829	-	DSBA oxidoreductase
826	 31.83	0	733217..733948	-	243	161528338	-	Nmar_0830	-	hypothetical protein
827	 35.42	0	734100..735152	+	350	161528339	-	Nmar_0831	-	glyceraldehyde-3-phosphate dehydrogenase
828	 35.25	0	735149..736402	-	417	161528340	-	Nmar_0832	-	hypothetical protein
829	 35.87	0	736555..737892	-	445	161528341	-	Nmar_0833	-	threonine synthase
830	 29.46	-1	737983..738369	+	128	161528342	-	Nmar_0834	-	hypothetical protein
831	 32.70	0	738666..738980	-	104	161528343	-	Nmar_0835	-	hypothetical protein
832	 36.43	0	739036..739842	-	268	161528344	-	Nmar_0836	-	hypothetical protein
833	 35.52	0	739895..740443	-	182	161528345	-	Nmar_0837	-	resolvase, Holliday junction-type
834	 27.69	-1	740761..740955	+	64	161528346	-	Nmar_0838	-	hypothetical protein
835	 32.49	0	741001..741828	+	275	161528347	-	Nmar_0839	-	hypothetical protein
836	 30.42	-1	741821..742129	-	102	161528348	-	Nmar_0840	-	hypothetical protein
837	 33.78	0	742126..743241	-	371	161528349	-	Nmar_0841	-	Propanoyl-CoA C-acyltransferase
838	 32.30	0	743238..744203	-	321	161528350	-	Nmar_0842	-	luciferase family protein
839	 29.45	-1	744462..745130	-	222	161528351	-	Nmar_0843	-	nucleotidyl transferase
840	 32.21	0	745167..745433	-	88	161528352	-	Nmar_0844	-	hypothetical protein
841	 39.19	+1	745568..745960	-	130	161528353	-	Nmar_0845	-	hypothetical protein
842	 34.56	0	745994..747136	-	380	161528354	-	Nmar_0846	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
843	 34.90	0	747236..747811	+	191	161528355	-	Nmar_0847	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
844	 36.64	0	747812..749020	-	402	161528356	-	Nmar_0848	-	threonine dehydratase
845	 29.63	-1	749201..750037	-	278	161528357	-	Nmar_0849	-	hypothetical protein
846	 33.81	0	750195..751031	+	278	161528358	-	Nmar_0850	-	adenylate/guanylate cyclase
847	 34.95	0	751329..751700	+	123	161528359	-	Nmar_0851	-	hypothetical protein
848	 27.65	-1	751758..752144	+	128	161528360	-	Nmar_0852	-	hypothetical protein
849	 37.47	0	752141..752551	-	136	161528361	-	Nmar_0853	-	glyoxalase/bleomycin resistance protein/dioxygenase
850	 36.99	0	752586..752804	-	72	161528362	-	Nmar_0854	-	AsnC family transcriptional regulator
851	 32.50	0	752798..753037	-	79	161528363	-	Nmar_0855	-	hypothetical protein
852	 34.08	0	753166..753432	+	88	161528364	-	Nmar_0856	-	hypothetical protein
853	 30.90	0	753628..753915	+	95	161528365	-	Nmar_0857	-	hypothetical protein
854	 31.84	0	754081..754617	-	178	161528366	-	Nmar_0858	-	ATP--cobalamin adenosyltransferase
855	 28.84	-1	754698..755231	+	177	161528367	-	Nmar_0859	-	metal dependent phosphohydrolase
856	 28.44	-1	755231..755455	+	74	161528368	-	Nmar_0860	-	hypothetical protein
857	 29.87	-1	755452..755826	-	124	161528369	-	Nmar_0861	-	hypothetical protein
858	 33.62	0	755829..756176	+	115	161528370	-	Nmar_0862	-	hypothetical protein
859	 35.29	0	756232..757455	+	407	161528371	-	Nmar_0863	-	LOR/SDH bifunctional protein
860	 32.36	0	757600..758112	+	170	161528372	-	Nmar_0864	-	hypothetical protein
861	 33.55	0	758109..759467	-	452	161528373	-	Nmar_0865	-	aminotransferase class I and II
862	 34.48	0	759537..761462	-	641	161528374	-	Nmar_0866	-	AMP-dependent synthetase and ligase
863	 38.26	+1	761506..761769	-	87	161528375	-	Nmar_0867	-	hypothetical protein
864	 34.90	0	761773..763176	-	467	161528376	-	Nmar_0868	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
865	 36.93	0	763173..764618	-	481	161528377	-	Nmar_0869	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
866	 33.33	0	764618..764884	-	88	161528378	-	Nmar_0870	-	hypothetical protein
867	 35.70	0	764895..766205	-	436	161528379	-	Nmar_0871	-	aspartyl-tRNA synthetase
868	 35.28	0	766788..767813	+	341	161528380	-	Nmar_0872	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
869	 36.09	0	767816..768613	-	265	161528381	-	Nmar_0873	-	phosphonate ABC transporter, inner membrane subunit
870	 33.69	0	768591..769421	-	276	161528382	-	Nmar_0874	-	ABC transporter related
871	 38.29	+1	769440..770528	-	362	161528383	-	Nmar_0875	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
872	 32.19	0	770616..770966	-	116	161528384	-	Nmar_0876	-	hypothetical protein
873	 31.83	0	770972..771304	-	110	161528385	-	Nmar_0877	-	putative transcriptional regulator
874	 36.35	0	771370..772098	-	242	161528386	-	Nmar_0878	-	hypothetical protein
875	 35.65	0	772111..772326	-	71	161528387	-	Nmar_0879	-	hypothetical protein
876	 31.90	0	772407..773036	+	209	161528388	-	Nmar_0880	-	hypothetical protein
877	 34.26	0	773072..773716	+	214	161528389	-	Nmar_0881	-	DSBA oxidoreductase
878	 35.52	0	773772..775052	+	426	161528390	-	Nmar_0882	-	peptide chain release factor 1
879	 36.05	0	775045..775449	-	134	161528391	-	Nmar_0883	-	histidine triad (HIT) protein
880	 38.50	+1	775557..776156	+	199	161528392	-	Nmar_0884	-	hypothetical protein
881	 33.85	0	776161..776355	-	64	161528393	-	Nmar_0885	-	hypothetical protein
882	 37.92	+1	776452..778128	+	558	161528394	-	Nmar_0886	-	dihydroxy-acid dehydratase
883	 27.93	-1	778118..778672	-	184	161528395	-	Nmar_0887	-	hypothetical protein
884	 33.19	0	778828..780228	-	466	161528396	-	Nmar_0888	-	helicase c2
885	 32.39	0	780605..780922	+	105	161528397	-	Nmar_0889	-	hypothetical protein
886	 42.68	+2	780986..781231	+	81	161528398	-	Nmar_0890	-	hypothetical protein
887	 31.84	0	781540..781806	+	88	161528399	-	Nmar_0891	-	hypothetical protein
888	 31.28	0	781999..782535	-	178	161528400	-	Nmar_0892	-	hypothetical protein
889	 36.30	0	782577..782846	-	89	161528401	-	Nmar_0893	-	hypothetical protein
890	 27.71	-1	783332..783580	-	82	161528402	-	Nmar_0894	-	hypothetical protein
891	 34.52	0	783883..784473	+	196	161528403	-	Nmar_0895	-	hypothetical protein
892	 31.21	0	784509..784838	+	109	161528404	-	Nmar_0896	-	hypothetical protein
893	 37.18	0	785551..785784	+	77	161528405	-	Nmar_0897	-	hypothetical protein
894	 33.76	0	785852..786319	+	155	161528406	-	Nmar_0898	-	hypothetical protein
895	 31.62	0	786988..787221	-	77	161528407	-	Nmar_0899	-	hypothetical protein
896	 32.76	0	787291..787641	+	116	161528408	-	Nmar_0900	-	hypothetical protein
897	 27.62	-1	788095..788304	+	69	161528409	-	Nmar_0901	-	hypothetical protein
898	 30.76	-1	788330..788872	+	180	161528410	-	Nmar_0902	-	hypothetical protein
899	 26.86	-2	788897..789313	-	138	161528411	-	Nmar_0903	-	hypothetical protein
900	 32.33	0	789419..789718	+	99	161528412	-	Nmar_0904	-	hypothetical protein
901	 35.96	0	789744..790391	-	215	161528413	-	Nmar_0905	-	hypothetical protein
902	 33.93	0	791128..791799	-	223	161528414	-	Nmar_0906	-	hypothetical protein
903	 30.85	0	791835..792236	-	133	161528415	-	Nmar_0907	-	hypothetical protein
904	 30.30	-1	792290..792487	+	65	161528416	-	Nmar_0908	-	hypothetical protein
905	 32.13	0	792948..793280	+	110	161528417	-	Nmar_0909	-	hypothetical protein
906	 29.60	-1	793511..794554	+	347	161528418	-	Nmar_0910	-	hypothetical protein
907	 35.41	0	794959..796308	+	449	161528419	-	Nmar_0911	-	anthranilate synthase
908	 34.84	0	796305..796901	+	198	161528420	-	Nmar_0912	-	glutamine amidotransferase of anthranilate synthase
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.