IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
725	 33.65	0	662927..663550	+	207	161528237	-	Nmar_0729	-	superoxide dismutase
726	 40.34	+1	663600..664898	+	432	161528238	-	Nmar_0730	-	hypothetical protein
727	 33.87	0	665007..665381	+	124	161528239	-	Nmar_0731	-	hypothetical protein
728	 34.13	0	665435..665686	+	83	161528240	-	Nmar_0732	-	hypothetical protein
729	 41.67	+2	665703..665846	-	47	161528241	-	Nmar_0733	-	hypothetical protein
730	 25.66	-2	666166..667611	-	481	161528242	-	Nmar_0734	-	FAD linked oxidase domain-containing protein
731	 31.74	0	667620..668933	-	437	161528243	-	Nmar_0735	-	hypothetical protein
732	 30.12	-1	669032..669436	+	134	161528244	-	Nmar_0736	-	hypothetical protein
733	 28.96	-1	669433..669981	-	182	161528245	-	Nmar_0737	-	heat shock protein DnaJ domain-containing protein
734	 29.95	-1	669992..670435	-	147	161528246	-	Nmar_0738	-	AsnC family transcriptional regulator
735	 35.53	0	670559..670786	+	75	161528247	-	Nmar_0739	-	TPR repeat-containing protein
736	 32.91	0	670859..671335	+	158	161528248	-	Nmar_0740	-	TPR repeat-containing protein
737	 35.06	0	671322..671495	-	57	161528249	-	Nmar_0741	-	hypothetical protein
738	 34.43	0	671572..672669	+	365	161528250	-	Nmar_0742	-	radical SAM domain-containing protein
739	 29.74	-1	672666..672971	-	101	161528251	-	Nmar_0743	-	hypothetical protein
740	 37.61	0	673009..673242	-	77	161528252	-	Nmar_0744	-	hypothetical protein
741	 32.99	0	673391..673681	-	96	161528253	-	Nmar_0745	-	hypothetical protein
742	 34.30	0	673708..674535	-	275	161528254	-	Nmar_0746	-	hypothetical protein
743	 33.75	0	674573..675526	+	317	161528255	-	Nmar_0747	-	hypothetical protein
744	 38.30	+1	675576..677768	+	730	161528256	-	Nmar_0748	-	elongation factor EF-2
745	 30.57	-1	677860..678438	+	192	161528257	-	Nmar_0749	-	hypothetical protein
746	 30.30	-1	678482..678712	+	76	161528258	-	Nmar_0750	-	hypothetical protein
747	 28.57	-1	678747..678977	+	76	161528259	-	Nmar_0751	-	hypothetical protein
748	 31.69	0	678980..679405	-	141	161528260	-	Nmar_0752	-	hypothetical protein
749	 33.33	0	679479..679691	-	70	161528261	-	Nmar_0753	-	hypothetical protein
750	 29.89	-1	679820..681301	+	493	161528262	-	Nmar_0754	-	hypothetical protein
751	 27.83	-1	681293..681910	-	205	161528263	-	Nmar_0755	-	O-methyltransferase family protein
752	 32.54	0	682006..682383	+	125	161528264	-	Nmar_0756	-	hypothetical protein
753	 25.31	-2	682447..682770	+	107	161528265	-	Nmar_0757	-	hypothetical protein
754	 29.58	-1	682965..683177	-	70	161528266	-	Nmar_0758	-	hypothetical protein
755	 27.84	-1	683694..683966	+	90	161528267	-	Nmar_0759	-	hypothetical protein
756	 29.45	-1	683963..684529	-	188	161528268	-	Nmar_0760	-	hypothetical protein
757	 29.06	-1	684539..684772	-	77	161528269	-	Nmar_0761	-	hypothetical protein
758	 31.44	0	684848..685111	+	87	161528270	-	Nmar_0762	-	hypothetical protein
759	 33.83	0	685116..685928	-	270	161528271	-	Nmar_0763	-	hypothetical protein
760	 36.36	0	685965..687782	-	605	161528272	-	Nmar_0764	-	CBS domain-containing protein
761	 37.39	0	687923..688366	+	147	161528273	-	Nmar_0765	-	hypothetical protein
762	 32.42	0	688407..688625	+	72	161528274	-	Nmar_0766	-	hypothetical protein
763	 36.13	0	688854..689246	+	130	161528275	-	Nmar_0767	-	hypothetical protein
764	 36.55	0	689395..689643	+	82	161528276	-	Nmar_0768	-	hypothetical protein
765	 37.55	0	689640..689900	-	86	161528277	-	Nmar_0769	-	hypothetical protein
766	 34.62	0	690338..691429	-	363	161528278	-	Nmar_0770	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
767	 35.66	0	691728..692285	+	185	161528279	-	Nmar_0771	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
768	 33.10	0	692293..692721	+	142	161528280	-	Nmar_0772	-	hypothetical protein
769	 33.82	0	692718..692924	-	68	161528281	-	Nmar_0773	-	sec-independent translocation protein mttA/Hcf106
770	 36.87	0	692953..693744	-	263	161528282	-	Nmar_0774	-	Sec-independent protein translocase, TatC subunit
771	 35.05	0	693772..694236	-	154	161528283	-	Nmar_0775	-	hypothetical protein
772	 29.97	-1	694554..694940	+	128	161528284	-	Nmar_0776	-	hypothetical protein
773	 34.10	0	695077..695337	+	86	161528285	-	Nmar_0777	-	phosphoribosylformylglycinamidine synthase, purS
774	 31.91	0	695334..695756	-	140	161528286	-	Nmar_0778	-	signal transduction protein
775	 34.35	0	695828..696514	+	228	161528287	-	Nmar_0779	-	phosphoribosylformylglycinamidine synthase I
776	 35.73	0	696511..698676	+	721	161528288	-	Nmar_0780	-	phosphoribosylformylglycinamidine synthase II
777	 38.78	+1	698669..700138	+	489	161528289	-	Nmar_0781	-	glutamine amidotransferase class-II
778	 33.69	0	700141..700419	+	92	161528290	-	Nmar_0782	-	hypothetical protein
779	 35.66	0	700454..700840	+	128	161528291	-	Nmar_0783	-	hypothetical protein
780	 34.42	0	700874..701698	+	274	161528292	-	Nmar_0784	-	phosphoribosylaminoimidazolesuccinocarboxamide synthase
781	 32.54	0	702047..702550	+	167	161528293	-	Nmar_0785	-	ArsR family transcriptional regulator
782	 34.58	0	702588..702908	+	106	161528294	-	Nmar_0786	-	hypothetical protein
783	 32.35	0	702901..703305	+	134	161528295	-	Nmar_0787	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
784	 46.12	+2	703382..703780	-	132	161528296	-	Nmar_0788	-	histone protein
785	 34.56	0	703882..704370	-	162	161528297	-	Nmar_0789	-	hypothetical protein
786	 35.86	0	704520..705113	+	197	161528298	-	Nmar_0790	-	hypothetical protein
787	 34.00	0	705832..706281	-	149	161528299	-	Nmar_0791	-	hypothetical protein
788	 36.55	0	706645..706893	-	82	161528300	-	Nmar_0792	-	hypothetical protein
789	 34.38	0	707231..707518	-	95	161528301	-	Nmar_0793	-	hypothetical protein
790	 31.90	0	707534..708091	-	185	161528302	-	Nmar_0794	-	ribosomal protein L6
791	 32.82	0	708081..708473	-	130	161528303	-	Nmar_0795	-	30S ribosomal protein S8P
792	 35.56	0	708480..708659	-	59	161528304	-	Nmar_0796	-	ribosomal protein S14
793	 36.21	0	708659..709180	-	173	161528305	-	Nmar_0797	-	50S ribosomal protein L5P
794	 33.75	0	709185..709901	-	238	161528306	-	Nmar_0798	-	30S ribosomal protein S4e
795	 35.50	0	709901..710407	-	168	161528307	-	Nmar_0799	-	KOW domain-containing protein
796	 38.53	+1	710412..710834	-	140	161528308	-	Nmar_0800	-	ribosomal protein L14b/L23e
797	 34.57	0	710834..711157	-	107	161528309	-	Nmar_0801	-	ribosomal protein S17
798	 30.71	-1	711154..711420	-	88	161528310	-	Nmar_0802	-	ribonuclease P, Rpp29
799	 35.75	0	711417..711623	-	68	161528311	-	Nmar_0803	-	ribosomal protein L29
800	 37.70	0	711620..712375	-	251	161528312	-	Nmar_0804	-	ribosomal protein S3
801	 36.17	0	712378..712836	-	152	161528313	-	Nmar_0805	-	ribosomal protein L22
802	 34.85	0	712842..713237	-	131	161528314	-	Nmar_0806	-	30S ribosomal protein S19P
803	 34.08	0	713265..713531	-	88	161528315	-	Nmar_0807	-	ribosomal protein L25/L23
804	 37.01	0	713528..714343	-	271	161528316	-	Nmar_0808	-	50S ribosomal protein L4P
805	 36.45	0	714340..715335	-	331	161528317	-	Nmar_0809	-	50S ribosomal protein L3P
806	 33.21	0	715541..716353	-	270	161528318	-	Nmar_0810	-	hypothetical protein
807	 36.86	0	716385..717122	-	245	161528319	-	Nmar_0811	-	proteasome subunit alpha
808	 33.81	0	717175..717591	+	138	161528320	-	Nmar_0812	-	hypothetical protein
809	 32.46	0	717819..718160	+	113	161528321	-	Nmar_0813	-	hypothetical protein
810	 35.69	0	718317..718655	-	112	161528322	-	Nmar_0814	-	hypothetical protein
811	 38.58	+1	718761..720380	-	539	161528323	-	Nmar_0815	-	blue (type1) copper domain-containing protein
812	 36.56	0	720467..721117	-	216	161528324	-	Nmar_0816	-	SNF7
813	 33.42	0	721209..722318	-	369	161528325	-	Nmar_0817	-	redoxin domain-containing protein
814	 31.70	0	722323..723057	-	244	161528326	-	Nmar_0818	-	cytochrome c biogenesis protein transmembrane region
815	 29.51	-1	723259..724383	-	374	161528327	-	Nmar_0819	-	8-amino-7-oxononanoate synthase
816	 30.48	-1	724551..725285	+	244	161528328	-	Nmar_0820	-	peptidase M10A and M12B matrixin and adamalysin
817	 35.37	0	725326..726306	-	326	161528329	-	Nmar_0821	-	biotin synthase
818	 34.27	0	726380..727660	-	426	161528330	-	Nmar_0822	-	aminotransferase class-III
819	 31.88	0	728011..728697	+	228	161528331	-	Nmar_0823	-	dethiobiotin synthase
820	 29.82	-1	728698..728925	-	75	161528332	-	Nmar_0824	-	hypothetical protein
821	 36.23	0	729208..730071	+	287	161528333	-	Nmar_0825	-	band 7 protein
822	 30.27	-1	730087..730380	-	97	161528334	-	Nmar_0826	-	hypothetical protein
823	 29.69	-1	730421..730969	-	182	161528335	-	Nmar_0827	-	hypothetical protein
824	 36.34	0	730969..732363	-	464	161528336	-	Nmar_0828	-	hydroxymethylglutaryl-CoA synthase
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.