IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
686	 35.15	0	631181..632062	+	293	161528198	-	Nmar_0690	-	tRNA methyltransferase complex GCD14 subunit
687	 38.08	+1	632107..632970	+	287	161528199	-	Nmar_0691	-	carbohydrate kinase, YjeF related protein
688	 35.18	0	632975..634327	+	450	161528200	-	Nmar_0692	-	peptidase M20
689	 37.65	0	634324..634740	-	138	161528201	-	Nmar_0693	-	DoxX family protein
690	 38.69	+1	634836..635432	+	198	161528202	-	Nmar_0694	-	proteasome endopeptidase complex
691	 32.29	0	635442..635918	-	158	161528203	-	Nmar_0695	-	PUA domain-containing protein
692	 37.49	0	635915..636925	-	336	161528204	-	Nmar_0696	-	homoserine dehydrogenase
693	 37.50	0	637018..637425	-	135	161528205	-	Nmar_0697	-	methionine-R-sulfoxide reductase
694	 29.55	-1	637462..639099	-	545	161528206	-	Nmar_0698	-	thymidylate synthase complementing protein ThyX
695	 35.71	0	639111..639404	-	97	161528207	-	Nmar_0699	-	hypothetical protein
696	 39.25	+1	639538..640416	+	292	161528208	-	Nmar_0700	-	hypothetical protein
697	 37.30	0	640471..642387	+	638	161528209	-	Nmar_0701	-	acetate--CoA ligase
698	 33.52	0	642384..642908	-	174	161528210	-	Nmar_0702	-	putative PAS/PAC sensor protein
699	 33.63	0	642950..643972	-	340	161528211	-	Nmar_0703	-	flap endonuclease-1
700	 32.46	0	644012..644812	-	266	161528212	-	Nmar_0704	-	hypothetical protein
701	 28.05	-1	644805..645656	-	283	161528213	-	Nmar_0705	-	transcriptional regulator, TrmB
702	 30.27	-1	645838..646848	+	336	161528214	-	Nmar_0706	-	peptidase M10A and M12B matrixin and adamalysin
703	 30.11	-1	646845..647495	+	216	161528215	-	Nmar_0707	-	response regulator receiver protein
704	 25.64	-2	647501..647773	+	90	161528216	-	Nmar_0708	-	hypothetical protein
705	 34.41	0	648158..648805	+	215	161528217	-	Nmar_0709	-	nitroreductase
706	 30.77	-1	648858..649091	+	77	161528218	-	Nmar_0710	-	AsnC/Lrp family regulatory protein
707	 30.95	0	649352..649729	+	125	161528219	-	Nmar_0711	-	hypothetical protein
708	 37.43	0	649883..650224	-	113	161528220	-	Nmar_0712	-	hypothetical protein
709	 29.87	-1	650279..650740	-	153	161528221	-	Nmar_0713	-	hypothetical protein
710	 29.04	-1	650813..652093	+	426	161528222	-	Nmar_0714	-	hypothetical protein
711	 34.08	0	652125..652526	+	133	161528223	-	Nmar_0715	-	Mov34/MPN/PAD-1 family protein
712	 45.45	+2	652664..652927	+	87	161528224	-	Nmar_0716	-	hypothetical protein
713	 30.45	-1	652930..653241	+	103	161528225	-	Nmar_0717	-	hypothetical protein
714	 33.85	0	653242..654609	-	455	161528226	-	Nmar_0718	-	binding-protein-dependent transport systems inner membrane component
715	 35.52	0	654606..655655	-	349	161528227	-	Nmar_0719	-	binding-protein-dependent transport systems inner membrane component
716	 32.04	0	655859..656167	+	102	161528228	-	Nmar_0720	-	hypothetical protein
717	 31.28	0	656186..656428	+	80	161528229	-	Nmar_0721	-	hypothetical protein
718	 27.47	-1	656430..656702	-	90	161528230	-	Nmar_0722	-	arsenate reductase and related
719	 34.07	0	657033..657980	-	315	161528231	-	Nmar_0723	-	hypothetical protein
720	 31.06	0	658136..658795	+	219	161528232	-	Nmar_0724	-	hypothetical protein
721	 32.89	0	658983..659663	-	226	161528233	-	Nmar_0725	-	hypothetical protein
722	 33.57	0	659913..661637	+	574	161528234	-	Nmar_0726	-	SNF2-related protein
723	 28.29	-1	661638..662252	-	204	161528235	-	Nmar_0727	-	hypothetical protein
724	 25.35	-2	662287..662850	-	187	161528236	-	Nmar_0728	-	hypothetical protein
725	 33.65	0	662927..663550	+	207	161528237	-	Nmar_0729	-	superoxide dismutase
726	 40.34	+1	663600..664898	+	432	161528238	-	Nmar_0730	-	hypothetical protein
727	 33.87	0	665007..665381	+	124	161528239	-	Nmar_0731	-	hypothetical protein
728	 34.13	0	665435..665686	+	83	161528240	-	Nmar_0732	-	hypothetical protein
729	 41.67	+2	665703..665846	-	47	161528241	-	Nmar_0733	-	hypothetical protein
730	 25.66	-2	666166..667611	-	481	161528242	-	Nmar_0734	-	FAD linked oxidase domain-containing protein
731	 31.74	0	667620..668933	-	437	161528243	-	Nmar_0735	-	hypothetical protein
732	 30.12	-1	669032..669436	+	134	161528244	-	Nmar_0736	-	hypothetical protein
733	 28.96	-1	669433..669981	-	182	161528245	-	Nmar_0737	-	heat shock protein DnaJ domain-containing protein
734	 29.95	-1	669992..670435	-	147	161528246	-	Nmar_0738	-	AsnC family transcriptional regulator
735	 35.53	0	670559..670786	+	75	161528247	-	Nmar_0739	-	TPR repeat-containing protein
736	 32.91	0	670859..671335	+	158	161528248	-	Nmar_0740	-	TPR repeat-containing protein
737	 35.06	0	671322..671495	-	57	161528249	-	Nmar_0741	-	hypothetical protein
738	 34.43	0	671572..672669	+	365	161528250	-	Nmar_0742	-	radical SAM domain-containing protein
739	 29.74	-1	672666..672971	-	101	161528251	-	Nmar_0743	-	hypothetical protein
740	 37.61	0	673009..673242	-	77	161528252	-	Nmar_0744	-	hypothetical protein
741	 32.99	0	673391..673681	-	96	161528253	-	Nmar_0745	-	hypothetical protein
742	 34.30	0	673708..674535	-	275	161528254	-	Nmar_0746	-	hypothetical protein
743	 33.75	0	674573..675526	+	317	161528255	-	Nmar_0747	-	hypothetical protein
744	 38.30	+1	675576..677768	+	730	161528256	-	Nmar_0748	-	elongation factor EF-2
745	 30.57	-1	677860..678438	+	192	161528257	-	Nmar_0749	-	hypothetical protein
746	 30.30	-1	678482..678712	+	76	161528258	-	Nmar_0750	-	hypothetical protein
747	 28.57	-1	678747..678977	+	76	161528259	-	Nmar_0751	-	hypothetical protein
748	 31.69	0	678980..679405	-	141	161528260	-	Nmar_0752	-	hypothetical protein
749	 33.33	0	679479..679691	-	70	161528261	-	Nmar_0753	-	hypothetical protein
750	 29.89	-1	679820..681301	+	493	161528262	-	Nmar_0754	-	hypothetical protein
751	 27.83	-1	681293..681910	-	205	161528263	-	Nmar_0755	-	O-methyltransferase family protein
752	 32.54	0	682006..682383	+	125	161528264	-	Nmar_0756	-	hypothetical protein
753	 25.31	-2	682447..682770	+	107	161528265	-	Nmar_0757	-	hypothetical protein
754	 29.58	-1	682965..683177	-	70	161528266	-	Nmar_0758	-	hypothetical protein
755	 27.84	-1	683694..683966	+	90	161528267	-	Nmar_0759	-	hypothetical protein
756	 29.45	-1	683963..684529	-	188	161528268	-	Nmar_0760	-	hypothetical protein
757	 29.06	-1	684539..684772	-	77	161528269	-	Nmar_0761	-	hypothetical protein
758	 31.44	0	684848..685111	+	87	161528270	-	Nmar_0762	-	hypothetical protein
759	 33.83	0	685116..685928	-	270	161528271	-	Nmar_0763	-	hypothetical protein
760	 36.36	0	685965..687782	-	605	161528272	-	Nmar_0764	-	CBS domain-containing protein
761	 37.39	0	687923..688366	+	147	161528273	-	Nmar_0765	-	hypothetical protein
762	 32.42	0	688407..688625	+	72	161528274	-	Nmar_0766	-	hypothetical protein
763	 36.13	0	688854..689246	+	130	161528275	-	Nmar_0767	-	hypothetical protein
764	 36.55	0	689395..689643	+	82	161528276	-	Nmar_0768	-	hypothetical protein
765	 37.55	0	689640..689900	-	86	161528277	-	Nmar_0769	-	hypothetical protein
766	 34.62	0	690338..691429	-	363	161528278	-	Nmar_0770	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
767	 35.66	0	691728..692285	+	185	161528279	-	Nmar_0771	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
768	 33.10	0	692293..692721	+	142	161528280	-	Nmar_0772	-	hypothetical protein
769	 33.82	0	692718..692924	-	68	161528281	-	Nmar_0773	-	sec-independent translocation protein mttA/Hcf106
770	 36.87	0	692953..693744	-	263	161528282	-	Nmar_0774	-	Sec-independent protein translocase, TatC subunit
771	 35.05	0	693772..694236	-	154	161528283	-	Nmar_0775	-	hypothetical protein
772	 29.97	-1	694554..694940	+	128	161528284	-	Nmar_0776	-	hypothetical protein
773	 34.10	0	695077..695337	+	86	161528285	-	Nmar_0777	-	phosphoribosylformylglycinamidine synthase, purS
774	 31.91	0	695334..695756	-	140	161528286	-	Nmar_0778	-	signal transduction protein
775	 34.35	0	695828..696514	+	228	161528287	-	Nmar_0779	-	phosphoribosylformylglycinamidine synthase I
776	 35.73	0	696511..698676	+	721	161528288	-	Nmar_0780	-	phosphoribosylformylglycinamidine synthase II
777	 38.78	+1	698669..700138	+	489	161528289	-	Nmar_0781	-	glutamine amidotransferase class-II
778	 33.69	0	700141..700419	+	92	161528290	-	Nmar_0782	-	hypothetical protein
779	 35.66	0	700454..700840	+	128	161528291	-	Nmar_0783	-	hypothetical protein
780	 34.42	0	700874..701698	+	274	161528292	-	Nmar_0784	-	phosphoribosylaminoimidazolesuccinocarboxamide synthase
781	 32.54	0	702047..702550	+	167	161528293	-	Nmar_0785	-	ArsR family transcriptional regulator
782	 34.58	0	702588..702908	+	106	161528294	-	Nmar_0786	-	hypothetical protein
783	 32.35	0	702901..703305	+	134	161528295	-	Nmar_0787	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
784	 46.12	+2	703382..703780	-	132	161528296	-	Nmar_0788	-	histone protein
785	 34.56	0	703882..704370	-	162	161528297	-	Nmar_0789	-	hypothetical protein
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.