IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
627	 34.49	0	573682..574890	-	402	161528139	-	Nmar_0631	-	geranylgeranyl reductase
628	 38.10	+1	574939..575148	-	69	161528140	-	Nmar_0632	-	hypothetical protein
629	 31.79	0	575347..575928	+	193	161528141	-	Nmar_0633	-	hypothetical protein
630	 36.75	0	575917..576678	-	253	161528142	-	Nmar_0634	-	short-chain dehydrogenase/reductase SDR
631	 31.63	0	576732..577610	-	292	161528143	-	Nmar_0635	-	2-hydroxy-3-oxopropionate reductase
632	 37.73	0	577614..578000	-	128	161528144	-	Nmar_0636	-	hypothetical protein
633	 32.79	0	578082..578450	+	122	161528145	-	Nmar_0637	-	zinc finger C2H2-type domain-containing protein
634	 29.70	-1	578441..578743	-	100	161528146	-	Nmar_0638	-	hypothetical protein
635	 39.82	+1	579023..579685	+	220	161528147	-	Nmar_0639	-	DSBA oxidoreductase
636	 35.42	0	579686..580165	+	159	161528148	-	Nmar_0640	-	hypothetical protein
637	 37.79	+1	580411..581352	+	313	161528149	-	Nmar_0641	-	hypothetical protein
638	 32.24	0	581336..582430	-	364	161528150	-	Nmar_0642	-	DNA-directed DNA polymerase
639	 28.17	-1	582503..582754	+	83	161528151	-	Nmar_0643	-	hypothetical protein
640	 33.33	0	583285..583518	+	77	161528152	-	Nmar_0644	-	DNA-binding protein
641	 25.83	-2	583499..583738	+	79	161528153	-	Nmar_0645	-	hypothetical protein
642	 32.69	0	583735..584355	-	206	161528154	-	Nmar_0646	-	lysine exporter protein LysE/YggA
643	 32.77	0	584407..585120	-	237	161528155	-	Nmar_0647	-	hypothetical protein
644	 35.03	0	585157..586098	-	313	161528156	-	Nmar_0648	-	putative deoxyhypusine synthase
645	 35.62	0	586202..587296	+	364	161528157	-	Nmar_0649	-	myo-inositol-1-phosphate synthase
646	 34.96	0	587297..588034	-	245	161528158	-	Nmar_0650	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
647	 32.79	0	588210..591734	+	1174	161528159	-	Nmar_0651	-	SMC domain-containing protein
648	 33.54	0	591731..592699	-	322	161528160	-	Nmar_0652	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
649	 30.59	-1	592793..593812	+	339	161528161	-	Nmar_0653	-	hypothetical protein
650	 32.98	0	593853..594419	-	188	161528162	-	Nmar_0654	-	NADPH-dependent FMN reductase
651	 34.24	0	594507..595166	-	219	161528163	-	Nmar_0655	-	DSBA oxidoreductase
652	 30.86	0	595230..596483	+	417	161528164	-	Nmar_0656	-	histidine kinase
653	 33.64	0	596491..597801	-	436	161528165	-	Nmar_0657	-	hypothetical protein
654	 35.76	0	597843..599285	-	480	161528166	-	Nmar_0658	-	prolyl-tRNA synthetase
655	 37.19	0	599345..599629	-	94	161528167	-	Nmar_0659	-	hypothetical protein
656	 25.94	-2	600147..602594	+	815	161528168	-	Nmar_0660	-	hypothetical protein
657	 29.42	-1	602646..603284	+	212	161528169	-	Nmar_0661	-	peptidase C26
658	 26.77	-2	603278..604069	+	263	161528170	-	Nmar_0662	-	hypothetical protein
659	 28.94	-1	604071..605186	+	371	161528171	-	Nmar_0663	-	sulfatase
660	 24.31	-2	605261..606412	-	383	161528172	-	Nmar_0664	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
661	 26.13	-2	606588..608129	+	513	161528173	-	Nmar_0665	-	hypothetical protein
662	 33.47	0	608181..608897	+	238	161528174	-	Nmar_0666	-	phosphoserine phosphatase SerB
663	 33.47	0	608932..609657	+	241	161528175	-	Nmar_0667	-	F420-dependent oxidoreductase, putative
664	 33.11	0	609714..610628	+	304	161528176	-	Nmar_0668	-	phosphotransferase domain-containing protein
665	 32.91	0	610696..610932	+	78	161528177	-	Nmar_0669	-	SirA family protein
666	 35.65	0	610941..611933	+	330	161528178	-	Nmar_0670	-	pyridoxal-5'-phosphate-dependent protein beta subunit
667	 27.64	-1	611934..612407	-	157	161528179	-	Nmar_0671	-	hypothetical protein
668	 36.72	0	612652..613656	-	334	161528180	-	Nmar_0672	-	thioredoxin reductase
669	 28.51	-1	613707..614204	-	165	161528181	-	Nmar_0673	-	signal-transduction protein
670	 31.02	0	614254..614685	+	143	161528182	-	Nmar_0674	-	UspA domain-containing protein
671	 34.20	0	614682..615029	+	115	161528183	-	Nmar_0675	-	hypothetical protein
672	 32.57	0	615047..615958	+	303	161528184	-	Nmar_0676	-	lactate/malate dehydrogenase
673	 28.66	-1	615949..616719	-	256	161528185	-	Nmar_0677	-	hypothetical protein
674	 38.58	+1	616743..617561	-	272	161528186	-	Nmar_0678	-	ribulose-1,5-biphosphate synthetase
675	 36.54	0	617751..619559	+	602	161528187	-	Nmar_0679	-	sulfite reductase (ferredoxin)
676	 35.84	0	619556..620353	+	265	161528188	-	Nmar_0680	-	rhodanese domain-containing protein
677	 31.91	0	620354..621481	-	375	161528189	-	Nmar_0681	-	TPR repeat-containing protein
678	 46.53	+2	621596..623224	+	542	161528190	-	Nmar_0682	-	triple helix repeat-containing collagen
679	 45.14	+2	623360..623740	-	126	161528191	-	Nmar_0683	-	histone protein
680	 33.42	0	624050..625159	-	369	161528192	-	Nmar_0684	-	small GTP-binding protein
681	 35.92	0	625481..626176	+	231	161528193	-	Nmar_0685	-	SPP-like hydrolase
682	 32.96	0	626178..628064	+	628	161528194	-	Nmar_0686	-	arginyl-tRNA synthetase
683	 33.72	0	628174..629472	+	432	161528195	-	Nmar_0687	-	peptidyl-arginine deiminase
684	 31.77	0	629474..629986	-	170	161528196	-	Nmar_0688	-	hypothetical protein
685	 34.50	0	630214..630555	-	113	161528197	-	Nmar_0689	-	hypothetical protein
686	 35.15	0	631181..632062	+	293	161528198	-	Nmar_0690	-	tRNA methyltransferase complex GCD14 subunit
687	 38.08	+1	632107..632970	+	287	161528199	-	Nmar_0691	-	carbohydrate kinase, YjeF related protein
688	 35.18	0	632975..634327	+	450	161528200	-	Nmar_0692	-	peptidase M20
689	 37.65	0	634324..634740	-	138	161528201	-	Nmar_0693	-	DoxX family protein
690	 38.69	+1	634836..635432	+	198	161528202	-	Nmar_0694	-	proteasome endopeptidase complex
691	 32.29	0	635442..635918	-	158	161528203	-	Nmar_0695	-	PUA domain-containing protein
692	 37.49	0	635915..636925	-	336	161528204	-	Nmar_0696	-	homoserine dehydrogenase
693	 37.50	0	637018..637425	-	135	161528205	-	Nmar_0697	-	methionine-R-sulfoxide reductase
694	 29.55	-1	637462..639099	-	545	161528206	-	Nmar_0698	-	thymidylate synthase complementing protein ThyX
695	 35.71	0	639111..639404	-	97	161528207	-	Nmar_0699	-	hypothetical protein
696	 39.25	+1	639538..640416	+	292	161528208	-	Nmar_0700	-	hypothetical protein
697	 37.30	0	640471..642387	+	638	161528209	-	Nmar_0701	-	acetate--CoA ligase
698	 33.52	0	642384..642908	-	174	161528210	-	Nmar_0702	-	putative PAS/PAC sensor protein
699	 33.63	0	642950..643972	-	340	161528211	-	Nmar_0703	-	flap endonuclease-1
700	 32.46	0	644012..644812	-	266	161528212	-	Nmar_0704	-	hypothetical protein
701	 28.05	-1	644805..645656	-	283	161528213	-	Nmar_0705	-	transcriptional regulator, TrmB
702	 30.27	-1	645838..646848	+	336	161528214	-	Nmar_0706	-	peptidase M10A and M12B matrixin and adamalysin
703	 30.11	-1	646845..647495	+	216	161528215	-	Nmar_0707	-	response regulator receiver protein
704	 25.64	-2	647501..647773	+	90	161528216	-	Nmar_0708	-	hypothetical protein
705	 34.41	0	648158..648805	+	215	161528217	-	Nmar_0709	-	nitroreductase
706	 30.77	-1	648858..649091	+	77	161528218	-	Nmar_0710	-	AsnC/Lrp family regulatory protein
707	 30.95	0	649352..649729	+	125	161528219	-	Nmar_0711	-	hypothetical protein
708	 37.43	0	649883..650224	-	113	161528220	-	Nmar_0712	-	hypothetical protein
709	 29.87	-1	650279..650740	-	153	161528221	-	Nmar_0713	-	hypothetical protein
710	 29.04	-1	650813..652093	+	426	161528222	-	Nmar_0714	-	hypothetical protein
711	 34.08	0	652125..652526	+	133	161528223	-	Nmar_0715	-	Mov34/MPN/PAD-1 family protein
712	 45.45	+2	652664..652927	+	87	161528224	-	Nmar_0716	-	hypothetical protein
713	 30.45	-1	652930..653241	+	103	161528225	-	Nmar_0717	-	hypothetical protein
714	 33.85	0	653242..654609	-	455	161528226	-	Nmar_0718	-	binding-protein-dependent transport systems inner membrane component
715	 35.52	0	654606..655655	-	349	161528227	-	Nmar_0719	-	binding-protein-dependent transport systems inner membrane component
716	 32.04	0	655859..656167	+	102	161528228	-	Nmar_0720	-	hypothetical protein
717	 31.28	0	656186..656428	+	80	161528229	-	Nmar_0721	-	hypothetical protein
718	 27.47	-1	656430..656702	-	90	161528230	-	Nmar_0722	-	arsenate reductase and related
719	 34.07	0	657033..657980	-	315	161528231	-	Nmar_0723	-	hypothetical protein
720	 31.06	0	658136..658795	+	219	161528232	-	Nmar_0724	-	hypothetical protein
721	 32.89	0	658983..659663	-	226	161528233	-	Nmar_0725	-	hypothetical protein
722	 33.57	0	659913..661637	+	574	161528234	-	Nmar_0726	-	SNF2-related protein
723	 28.29	-1	661638..662252	-	204	161528235	-	Nmar_0727	-	hypothetical protein
724	 25.35	-2	662287..662850	-	187	161528236	-	Nmar_0728	-	hypothetical protein
725	 33.65	0	662927..663550	+	207	161528237	-	Nmar_0729	-	superoxide dismutase
726	 40.34	+1	663600..664898	+	432	161528238	-	Nmar_0730	-	hypothetical protein
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.