IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
334	 35.30	0	301284..302198	-	304	161527846	-	Nmar_0338	-	malate dehydrogenase
335	 31.20	0	302289..303509	+	406	161527847	-	Nmar_0339	-	hypothetical protein
336	 32.71	0	303510..304307	+	265	161527848	-	Nmar_0340	-	ExsB family protein
337	 33.85	0	304304..305470	+	388	161527849	-	Nmar_0341	-	cysteine desulfurase
338	 33.71	0	305467..306258	-	263	161527850	-	Nmar_0342	-	hypothetical protein
339	 40.11	+1	306364..307248	-	294	161527851	-	Nmar_0343	-	hypothetical protein
340	 38.11	+1	307311..308168	-	285	161527852	-	Nmar_0344	-	hypothetical protein
341	 38.45	+1	308232..309071	-	279	161527853	-	Nmar_0345	-	hypothetical protein
342	 33.33	0	309252..309503	+	83	161527854	-	Nmar_0346	-	RNA polymerase Rpb5
343	 37.43	0	309504..312851	+	1115	161527855	-	Nmar_0347	-	DNA-directed RNA polymerase subunit beta
344	 37.92	+1	312851..316642	+	1263	161527856	-	Nmar_0348	-	DNA-directed RNA polymerase subunit A'
345	 33.74	0	316647..316889	+	80	161527857	-	Nmar_0349	-	like-Sm ribonucleoprotein core
346	 34.10	0	316926..318104	+	392	161527858	-	Nmar_0350	-	hypothetical protein
347	 31.89	0	318160..319821	+	553	161527859	-	Nmar_0351	-	TPR repeat-containing protein
348	 31.17	0	319896..320219	+	107	161527860	-	Nmar_0352	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
349	 35.27	0	320271..320735	+	154	161527861	-	Nmar_0353	-	NusA family protein
350	 38.13	+1	320739..321176	+	145	161527862	-	Nmar_0354	-	30S ribosomal protein S12P
351	 36.00	0	321179..321778	+	199	161527863	-	Nmar_0355	-	30S ribosomal protein S7P
352	 30.91	0	321937..322266	-	109	161527864	-	Nmar_0356	-	hypothetical protein
353	 35.89	0	322289..322993	+	234	161527865	-	Nmar_0357	-	hypothetical protein
354	 32.44	0	322995..323444	+	149	161527866	-	Nmar_0358	-	GCN5-related N-acetyltransferase
355	 34.63	0	323446..324444	-	332	161527867	-	Nmar_0359	-	dehydrogenase (flavoprotein)-like protein
356	 38.14	+1	324760..325362	+	200	161527868	-	Nmar_0360	-	nitroreductase
357	 36.18	0	325543..325788	+	81	161527869	-	Nmar_0361	-	hypothetical protein
358	 38.89	+1	326058..326291	+	77	161527870	-	Nmar_0362	-	hypothetical protein
359	 35.66	0	326498..328084	-	528	161527871	-	Nmar_0363	-	putative periplasmic ligand-binding sensor protein
360	 33.91	0	328905..329423	+	172	161527872	-	Nmar_0364	-	hypothetical protein
361	 35.29	0	329707..330012	-	101	161527873	-	Nmar_0365	-	hypothetical protein
362	 36.54	0	330106..330759	-	217	161527874	-	Nmar_0366	-	uracil-DNA glycosylase superfamily protein
363	 36.61	0	330772..333639	-	955	161527875	-	Nmar_0367	-	leucyl-tRNA synthetase
364	 36.40	0	333646..336315	-	889	161527876	-	Nmar_0368	-	alanyl-tRNA synthetase
365	 35.51	0	336389..337354	+	321	161527877	-	Nmar_0369	-	alcohol dehydrogenase
366	 35.37	0	337401..337793	+	130	161527878	-	Nmar_0370	-	hypothetical protein
367	 36.66	0	337790..339022	-	410	161527879	-	Nmar_0371	-	glucose sorbosone dehydrogenase
368	 32.21	0	339073..340590	-	505	161527880	-	Nmar_0372	-	histidine kinase
369	 37.84	+1	340670..341179	+	169	161527881	-	Nmar_0373	-	hypothetical protein
370	 46.23	+2	341230..341547	+	105	161527882	-	Nmar_0374	-	50S ribosomal protein L12P
371	 36.18	0	341630..342262	+	210	161527883	-	Nmar_0375	-	hypothetical protein
372	 30.42	-1	342391..342768	+	125	161527884	-	Nmar_0376	-	response regulator receiver protein
373	 32.55	0	342779..343666	-	295	161527885	-	Nmar_0377	-	hypothetical protein
374	 31.02	0	343754..343969	-	71	161527886	-	Nmar_0378	-	hypothetical protein
375	 33.11	0	343966..344403	-	145	161527887	-	Nmar_0379	-	hypothetical protein
376	 34.26	0	344405..345478	-	357	161527888	-	Nmar_0380	-	hypothetical protein
377	 37.72	0	345558..346424	-	288	161527889	-	Nmar_0381	-	acidic ribosomal protein P0
378	 36.80	0	346417..347079	-	220	161527890	-	Nmar_0382	-	ribosomal protein L1
379	 33.79	0	347271..347708	+	145	161527891	-	Nmar_0383	-	AsnC family transcriptional regulator
380	 34.04	0	348189..348329	+	46	161527892	-	Nmar_0384	-	hypothetical protein
381	 39.38	+1	348548..349027	-	159	161527893	-	Nmar_0385	-	ribosomal protein L11
382	 35.73	0	349062..349520	-	152	161527894	-	Nmar_0386	-	NusG antitermination factor
383	 36.68	0	349736..350512	+	258	161527895	-	Nmar_0387	-	hypothetical protein
384	 35.00	0	350509..350808	+	99	161527896	-	Nmar_0388	-	methylated-DNA--protein-cysteine methyltransferase
385	 35.86	0	350810..351205	-	131	161527897	-	Nmar_0389	-	glyoxalase/bleomycin resistance protein/dioxygenase
386	 36.40	0	351250..351705	-	151	161527898	-	Nmar_0390	-	50S ribosomal protein L19e
387	 37.28	0	351689..352093	-	134	161527899	-	Nmar_0391	-	ribosomal protein L32e
388	 37.53	0	352349..353848	+	499	161527900	-	Nmar_0392	-	phosphoenolpyruvate carboxykinase
389	 36.21	0	353850..355832	-	660	161527901	-	Nmar_0393	-	peptidase S8 and S53 subtilisin kexin sedolisin
390	 39.45	+1	355951..356571	+	206	161527902	-	Nmar_0394	-	superoxide dismutase
391	 36.53	0	356654..357091	+	145	161527903	-	Nmar_0395	-	prefoldin, alpha subunit
392	 38.00	+1	357095..358636	+	513	161527904	-	Nmar_0396	-	signal recognition particle-docking protein FtsY
393	 36.28	0	358633..359547	+	304	161527905	-	Nmar_0397	-	ornithine carbamoyltransferase
394	 38.92	+1	359584..360066	+	160	161527906	-	Nmar_0398	-	50S ribosomal protein L18P
395	 38.91	+1	360068..360784	+	238	161527907	-	Nmar_0399	-	30S ribosomal protein S5P
396	 35.90	0	360791..361258	+	155	161527908	-	Nmar_0400	-	50S ribosomal protein L30P
397	 43.01	+2	361260..361724	+	154	161527909	-	Nmar_0401	-	ribosomal protein L15
398	 42.28	+2	361717..363147	+	476	161527910	-	Nmar_0402	-	preprotein translocase, SecY subunit
399	 37.13	0	363134..363712	+	192	161527911	-	Nmar_0403	-	adenylate kinase
400	 37.18	0	363716..364339	+	207	161527912	-	Nmar_0404	-	membrane protein-like protein
401	 36.36	0	364336..364896	+	186	161527913	-	Nmar_0405	-	cytidylate kinase
402	 36.34	0	364893..365891	+	332	161527914	-	Nmar_0406	-	pseudouridylate synthase subunit TruB
403	 32.89	0	365895..366341	+	148	161527915	-	Nmar_0407	-	hypothetical protein
404	 37.47	0	366847..367329	+	160	161527916	-	Nmar_0408	-	secreted protein
405	 35.69	0	367332..368645	-	437	161527917	-	Nmar_0409	-	FAD dependent oxidoreductase
406	 36.17	0	368734..369015	+	93	161527918	-	Nmar_0410	-	hypothetical protein
407	 29.92	-1	369033..369413	+	126	161527919	-	Nmar_0411	-	hypothetical protein
408	 33.75	0	369607..370575	-	322	161527920	-	Nmar_0412	-	glyoxylate reductase
409	 35.95	0	370822..372732	+	636	161527921	-	Nmar_0413	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
410	 38.11	+1	372722..373684	+	320	161527922	-	Nmar_0414	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
411	 33.11	0	373734..374174	+	146	161527923	-	Nmar_0415	-	hypothetical protein
412	 32.58	0	374167..374700	-	177	161527924	-	Nmar_0416	-	hypothetical protein
413	 37.10	0	374758..375129	+	123	161527925	-	Nmar_0417	-	hypothetical protein
414	 33.33	0	375131..375700	-	189	161527926	-	Nmar_0418	-	hypothetical protein
415	 34.74	0	375731..376510	-	259	161527927	-	Nmar_0419	-	hypothetical protein
416	 39.40	+1	376584..377852	+	422	161527928	-	Nmar_0420	-	3-isopropylmalate dehydratase
417	 35.82	0	377852..378334	+	160	161527929	-	Nmar_0421	-	3-isopropylmalate dehydratase, small subunit
418	 38.91	+1	378343..379758	+	471	161527930	-	Nmar_0422	-	3-isopropylmalate dehydratase, large subunit
419	 33.33	0	379760..380344	+	194	161527931	-	Nmar_0423	-	3-isopropylmalate dehydratase, small subunit
420	 33.33	0	380322..381041	-	239	161527932	-	Nmar_0424	-	nucleotidyl transferase
421	 38.00	+1	381045..381494	-	149	161527933	-	Nmar_0425	-	ribosomal protein S9
422	 34.41	0	381491..381955	-	154	161527934	-	Nmar_0426	-	ribosomal protein L13
423	 35.06	0	381948..382295	-	115	161527935	-	Nmar_0427	-	ribosomal protein L15
424	 36.49	0	382339..383004	-	221	161527936	-	Nmar_0428	-	RNA polymerase insert
425	 32.77	0	383085..383438	+	117	161527937	-	Nmar_0429	-	hypothetical protein
426	 35.37	0	383542..384228	+	228	161527938	-	Nmar_0430	-	putative RNA-associated protein
427	 37.30	0	384228..384908	+	226	161527939	-	Nmar_0431	-	exosome complex RNA-binding protein Rrp4
428	 39.05	+1	384908..385642	+	244	161527940	-	Nmar_0432	-	exosome complex exonuclease 1
429	 38.22	+1	385645..386463	+	272	161527941	-	Nmar_0433	-	exosome complex RNA-binding protein Rrp42
430	 34.74	0	386465..386677	+	70	161527942	-	Nmar_0434	-	hypothetical protein
431	 33.33	0	386661..386906	+	81	161527943	-	Nmar_0435	-	hypothetical protein
432	 36.67	0	386930..387319	+	129	161527944	-	Nmar_0436	-	prefoldin, beta subunit
433	 35.66	0	387372..388058	+	228	161527945	-	Nmar_0437	-	ERCC4 domain-containing protein
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.