IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.31   STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
121	 22.18	-2	110737..111624	-	295	161527633	-	Nmar_0121	-	NAD-dependent epimerase/dehydratase
122	 27.51	-1	111720..112664	+	314	161527634	-	Nmar_0122	-	NAD-dependent epimerase/dehydratase
123	 24.98	-2	112659..113699	-	346	161527635	-	Nmar_0123	-	glycosyl transferase family protein
124	 27.37	-2	113741..114796	-	351	161527636	-	Nmar_0124	-	glucose-1-phosphate thymidyltransferase
125	 26.36	-2	114842..115831	-	329	161527637	-	Nmar_0125	-	dTDP-glucose 4,6-dehydratase
126	 29.19	-1	116426..117607	-	393	161527638	-	Nmar_0126	-	GDSL family lipase
127	 33.98	0	117608..119311	-	567	161527639	-	Nmar_0127	-	carbamoyltransferase
128	 26.44	-2	119311..119658	-	115	161527640	-	Nmar_0128	-	hypothetical protein
129	 24.84	-2	119660..119812	-	50	161527641	-	Nmar_0129	-	hypothetical protein
130	 29.59	-1	119962..120735	-	257	161527642	-	Nmar_0130	-	hypothetical protein
131	 31.25	0	120842..121897	+	351	161527643	-	Nmar_0131	-	N-acylneuraminate-9-phosphate synthase
132	 28.47	-1	121900..122988	-	362	161527644	-	Nmar_0132	-	glutamine--scyllo-inositol transaminase
133	 21.80	-2	122985..123383	-	132	161527645	-	Nmar_0133	-	hypothetical protein
134	 26.77	-2	123483..124076	+	197	161527646	-	Nmar_0134	-	methionyl-tRNA formyltransferase-like protein
135	 24.51	-2	124078..124836	+	252	161527647	-	Nmar_0135	-	acylneuraminate cytidylyltransferase
136	 25.31	-2	124833..125879	-	348	161527648	-	Nmar_0136	-	oxidoreductase domain-containing protein
137	 26.88	-2	125943..127181	-	412	161527649	-	Nmar_0137	-	aminopeptidase domain-containing protein
138	 22.99	-2	127275..127622	+	115	161527650	-	Nmar_0138	-	4'-phosphopantetheinyl transferase
139	 22.94	-2	127631..129448	-	605	161527651	-	Nmar_0139	-	hypothetical protein
140	 29.37	-1	129568..130626	+	352	161527652	-	Nmar_0140	-	pyruvate carboxyltransferase
141	 23.94	-2	130601..132058	+	485	161527653	-	Nmar_0141	-	AMP-dependent synthetase and ligase
142	 29.61	-1	132142..132786	+	214	161527654	-	Nmar_0142	-	cyclase family protein
143	 23.17	-2	132804..133049	+	81	161527655	-	Nmar_0143	-	hypothetical protein
144	 27.61	-1	133033..133818	+	261	161527656	-	Nmar_0144	-	aminoglycoside N3'-acetyltransferase
145	 30.26	-1	133802..134257	-	151	161527657	-	Nmar_0145	-	hypothetical protein
146	 29.90	-1	134267..135256	-	329	161527658	-	Nmar_0146	-	polysaccharide biosynthesis protein CapD
147	 23.61	-2	135375..136670	+	431	161527659	-	Nmar_0147	-	hypothetical protein
148	 33.03	0	136667..137995	+	442	161527660	-	Nmar_0148	-	aminotransferase class-III
149	 25.40	-2	138001..138744	-	247	161527661	-	Nmar_0149	-	acylneuraminate cytidylyltransferase
150	 32.83	0	138746..139729	-	327	161527662	-	Nmar_0150	-	NAD-dependent epimerase/dehydratase
151	 28.87	-1	141684..142691	+	335	161527663	-	Nmar_0153	-	oxidoreductase domain-containing protein
152	 29.23	-1	142688..144052	+	454	161527664	-	Nmar_0154	-	sulfatase
153	 31.59	0	144143..145516	+	457	161527665	-	Nmar_0155	-	helix-turn-helix domain-containing protein
154	 28.00	-1	145547..146671	+	374	161527666	-	Nmar_0156	-	sulfatase
155	 25.40	-2	146673..147416	-	247	161527667	-	Nmar_0157	-	sugar nucleotidyltransferase-like protein
156	 33.00	0	148450..149349	-	299	161527668	-	Nmar_0160	-	putative phosphoenolpyruvate phosphomutase
157	 30.56	-1	149412..150347	+	311	161527669	-	Nmar_0161	-	iron-containing alcohol dehydrogenase
158	 30.64	-1	150349..150645	-	98	161527670	-	Nmar_0162	-	Rieske (2Fe-2S) domain-containing protein
159	 31.52	0	150648..151970	-	440	161527671	-	Nmar_0163	-	hypothetical protein
160	 25.82	-2	152015..152839	-	274	161527672	-	Nmar_0164	-	signal transduction protein
161	 28.57	-1	152989..153954	+	321	161527673	-	Nmar_0165	-	glycosyl transferase family protein
162	 28.15	-1	153960..154847	+	295	161527674	-	Nmar_0166	-	sulfotransferase
163	 26.13	-2	154844..155815	-	323	161527675	-	Nmar_0167	-	RpiR family transcriptional regulator
164	 27.83	-1	155950..156876	+	308	161527676	-	Nmar_0168	-	NAD-dependent epimerase/dehydratase
165	 33.14	0	156890..157927	+	345	161527677	-	Nmar_0169	-	aIF-2BI family translation initiation factor
166	 24.32	-2	157954..158940	+	328	161527678	-	Nmar_0170	-	oxidoreductase domain-containing protein
167	 25.16	-2	158989..159906	+	305	161527679	-	Nmar_0171	-	oxidoreductase domain-containing protein
168	 34.59	0	159978..160616	+	212	161527680	-	Nmar_0172	-	hypothetical protein
169	 29.17	-1	160619..161266	-	215	161527681	-	Nmar_0173	-	short-chain dehydrogenase/reductase SDR
170	 32.50	0	161293..161532	-	79	161527682	-	Nmar_0174	-	hypothetical protein
171	 34.68	0	161651..162244	+	197	161527683	-	Nmar_0175	-	hypothetical protein
172	 30.28	-1	162208..162699	-	163	161527684	-	Nmar_0176	-	hypothetical protein
173	 35.12	0	162861..164036	+	391	161527685	-	Nmar_0177	-	alanine aminotransferase
174	 29.85	-1	164030..164431	-	133	161527686	-	Nmar_0178	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
175	 33.76	0	164415..164648	-	77	161527687	-	Nmar_0179	-	hypothetical protein
176	 33.18	0	164664..165335	-	223	161527688	-	Nmar_0180	-	NADP oxidoreductase coenzyme F420-dependent
177	 36.22	0	165387..166010	+	207	161527689	-	Nmar_0181	-	phosphoglycerate mutase
178	 38.70	+1	166066..166326	+	86	161527690	-	Nmar_0182	-	hypothetical protein
179	 37.73	0	166329..166760	+	143	161527691	-	Nmar_0183	-	cytochrome c oxidase subunit II
180	 39.55	+1	166798..168324	+	508	161527692	-	Nmar_0184	-	cytochrome c oxidase subunit I
181	 41.77	+2	168337..169284	+	315	161527693	-	Nmar_0185	-	blue (type1) copper domain-containing protein
182	 35.99	0	169322..169735	+	137	161527694	-	Nmar_0186	-	hypothetical protein
183	 37.52	0	169725..170249	-	174	161527695	-	Nmar_0187	-	hypothetical protein
184	 36.01	0	170346..170942	+	198	161527696	-	Nmar_0188	-	hypothetical protein
185	 31.27	0	171179..172975	+	598	161527697	-	Nmar_0189	-	histidine kinase
186	 30.09	-1	172976..173530	-	184	161527698	-	Nmar_0190	-	methyltransferase type 11
187	 38.89	+1	173569..173730	-	53	161527699	-	Nmar_0191	-	hypothetical protein
188	 36.28	0	173772..174686	-	304	161527700	-	Nmar_0192	-	branched-chain amino acid aminotransferase
189	 32.56	0	175136..176551	-	471	161527701	-	Nmar_0193	-	aspartate/glutamate/uridylate kinase
190	 29.81	-1	176568..177590	-	340	161527702	-	Nmar_0194	-	glycosyltransferase family 28 protein
191	 36.52	0	177763..178044	+	93	161527703	-	Nmar_0195	-	hypothetical protein
192	 35.06	0	178141..178488	-	115	161527704	-	Nmar_0196	-	hypothetical protein
193	 33.61	0	178619..178984	+	121	161527705	-	Nmar_0197	-	hypothetical protein
194	 32.75	0	178988..179500	-	170	161527706	-	Nmar_0198	-	hypothetical protein
195	 32.94	0	179561..179812	+	83	161527707	-	Nmar_0199	-	hypothetical protein
196	 32.67	0	179850..180302	+	150	161527708	-	Nmar_0200	-	hypothetical protein
197	 31.86	0	180299..181180	-	293	161527709	-	Nmar_0201	-	radical SAM domain-containing protein
198	 30.03	-1	181280..181582	+	100	161527710	-	Nmar_0202	-	ArsR family transcriptional regulator
199	 33.68	0	181608..181892	+	94	161527711	-	Nmar_0203	-	hypothetical protein
200	 29.50	-1	181928..182371	+	147	161527712	-	Nmar_0204	-	hypothetical protein
201	 31.65	0	182361..182717	+	118	161527713	-	Nmar_0205	-	ribonuclease H
202	 34.91	0	182783..184879	+	698	161527714	-	Nmar_0206	-	CoA-binding domain-containing protein
203	 36.87	0	184953..186479	+	508	161527715	-	Nmar_0207	-	vinylacetyl-CoA Delta-isomerase
204	 34.18	0	186634..187344	-	236	161527716	-	Nmar_0208	-	peptidase S26B, signal peptidase
205	 36.96	0	187385..188155	-	256	161527717	-	Nmar_0209	-	hypothetical protein
206	 38.53	+1	188271..188597	+	108	161527718	-	Nmar_0210	-	thioredoxin
207	 39.17	+1	188840..189199	+	119	161527719	-	Nmar_0211	-	hypothetical protein
208	 38.33	+1	189221..189760	-	179	161527720	-	Nmar_0212	-	hypothetical protein
209	 35.23	0	190362..190625	-	87	161527721	-	Nmar_0213	-	hypothetical protein
210	 36.34	0	190720..192114	+	464	161527722	-	Nmar_0214	-	dihydropyrimidinase
211	 33.70	0	192117..192944	-	275	161527723	-	Nmar_0215	-	hypothetical protein
212	 28.80	-1	192965..193582	-	205	161527724	-	Nmar_0216	-	AMMECR1 domain-containing protein
213	 33.61	0	193616..194686	+	356	161527725	-	Nmar_0217	-	radical SAM domain-containing protein
214	 32.00	0	194923..195597	-	224	161527726	-	Nmar_0218	-	ribose 5-phosphate isomerase
215	 32.50	0	195598..196557	-	319	161527727	-	Nmar_0219	-	hypothetical protein
216	 37.50	0	196558..196725	-	55	161527728	-	Nmar_0220	-	50S ribosomal protein L37e
217	 38.82	+1	196736..196972	-	78	161527729	-	Nmar_0221	-	like-Sm ribonucleoprotein core
218	 32.09	0	197030..197752	-	240	161527730	-	Nmar_0222	-	creatininase
219	 30.92	0	197758..198627	-	289	161527731	-	Nmar_0223	-	formyl transferase domain-containing protein
220	 34.22	0	198788..200137	+	449	161527732	-	Nmar_0224	-	phosphoglucosamine mutase
34.31	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.