IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1597	 37.54	0	1462737..1463069	-	110	161529109	-	Nmar_1601	-	hypothetical protein
1598	 41.52	+2	1463132..1463473	-	113	161529110	-	Nmar_1602	-	ubiquitin-associated domain-containing protein
1599	 35.23	0	1463470..1463943	-	157	161529111	-	Nmar_1603	-	PUA domain-containing protein
1600	 35.43	0	1464034..1465080	+	348	161529112	-	Nmar_1604	-	phosphate uptake regulator, PhoU
1601	 34.50	0	1465136..1466251	+	371	161529113	-	Nmar_1605	-	GTP1/OBG protein
1602	 34.83	0	1466241..1466774	+	177	161529114	-	Nmar_1606	-	hypothetical protein
1603	 35.27	0	1466801..1467316	+	171	161529115	-	Nmar_1607	-	transcription factor TFIIE, alpha subunit
1604	 35.89	0	1467443..1468774	+	443	161529116	-	Nmar_1608	-	aldehyde dehydrogenase
1605	 35.67	0	1468916..1469215	-	99	161529117	-	Nmar_1609	-	hypothetical protein
1606	 33.15	0	1469218..1469775	-	185	161529118	-	Nmar_1610	-	hemerythrin HHE cation binding domain-containing protein
1607	 34.90	0	1469869..1470123	-	84	161529119	-	Nmar_1611	-	fused DNA topoisomerase I/SWI domain-containing protein
1608	 30.14	-1	1470160..1470816	-	218	161529120	-	Nmar_1612	-	deaminase-reductase domain-containing protein
1609	 32.83	0	1470803..1471993	-	396	161529121	-	Nmar_1613	-	amidohydrolase
1610	 29.89	-1	1471987..1472742	-	251	161529122	-	Nmar_1614	-	GTP cyclohydrolase IIA
1611	 37.89	+1	1472739..1473155	-	138	161529123	-	Nmar_1615	-	6,7-dimethyl-8-ribityllumazine synthase
1612	 34.83	0	1473158..1473823	-	221	161529124	-	Nmar_1616	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1613	 30.98	0	1473902..1474495	-	197	161529125	-	Nmar_1617	-	riboflavin synthase, alpha subunit
1614	 31.27	0	1474520..1475245	-	241	161529126	-	Nmar_1618	-	TPR repeat-containing protein
1615	 30.48	-1	1475511..1475861	-	116	161529127	-	Nmar_1619	-	response regulator receiver protein
1616	 27.42	-1	1475914..1476522	+	202	161529128	-	Nmar_1620	-	hypothetical protein
1617	 34.50	0	1476524..1477378	-	284	161529129	-	Nmar_1621	-	Citryl-CoA lyase
1618	 39.65	+1	1477386..1478462	-	358	161529130	-	Nmar_1622	-	alcohol dehydrogenase
1619	 34.40	0	1478505..1478786	-	93	161529131	-	Nmar_1623	-	DNA-binding TFAR19-related protein
1620	 37.53	0	1478794..1479246	-	150	161529132	-	Nmar_1624	-	30S ribosomal protein S19e
1621	 31.39	0	1479729..1480397	-	222	161529133	-	Nmar_1625	-	ribosome biogenesis protein
1622	 34.93	0	1480399..1481523	-	374	161529134	-	Nmar_1626	-	hypothetical protein
1623	 37.70	0	1481570..1484224	-	884	161529135	-	Nmar_1627	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
1624	 35.17	0	1484428..1486599	-	723	161529136	-	Nmar_1628	-	regulatory protein ArsR
1625	 32.76	0	1486737..1486910	-	57	161529137	-	Nmar_1629	-	hypothetical protein
1626	 39.02	+1	1486969..1487355	-	128	161529138	-	Nmar_1630	-	hypothetical protein
1627	 39.18	+1	1487336..1488499	-	387	161529139	-	Nmar_1631	-	Propanoyl-CoA C-acyltransferase
1628	 35.73	0	1488548..1489006	+	152	161529140	-	Nmar_1632	-	DNA topoisomerase type IA Zn finger domain-containing protein
1629	 33.09	0	1488990..1489796	-	268	161529141	-	Nmar_1633	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1630	 31.64	0	1489962..1490138	-	58	161529142	-	Nmar_1634	-	4-oxalocrotonate tautomerase
1631	 37.55	0	1490172..1490930	-	252	161529143	-	Nmar_1635	-	rhomboid family protein
1632	 30.24	-1	1490971..1492524	-	517	161529144	-	Nmar_1636	-	hypothetical protein
1633	 33.23	0	1492676..1494547	-	623	161529145	-	Nmar_1637	-	blue (type1) copper domain-containing protein
1634	 35.42	0	1494591..1496462	-	623	161529146	-	Nmar_1638	-	hypothetical protein
1635	 29.88	-1	1496471..1497802	-	443	161529147	-	Nmar_1639	-	hypothetical protein
1636	 33.55	0	1497802..1499169	-	455	161529148	-	Nmar_1640	-	hypothetical protein
1637	 34.07	0	1499144..1500094	-	316	161529149	-	Nmar_1641	-	von Willebrand factor type A
1638	 32.99	0	1500095..1500967	-	290	161529150	-	Nmar_1642	-	hypothetical protein
1639	 33.82	0	1500977..1501999	-	340	161529151	-	Nmar_1643	-	ATPase
1640	 32.99	0	1502127..1503287	-	386	161529152	-	Nmar_1644	-	hypothetical protein
1641	 33.33	0	1503352..1503852	-	166	161529153	-	Nmar_1645	-	ArsR family transcriptional regulator
1642	 36.97	0	1503845..1504201	-	118	161529154	-	Nmar_1646	-	hypothetical protein
1643	 32.52	0	1504301..1505896	-	531	161529155	-	Nmar_1647	-	hypothetical protein
1644	 35.89	0	1506093..1507811	-	572	161529156	-	Nmar_1648	-	hypothetical protein
1645	 33.45	0	1507916..1508743	+	275	161529157	-	Nmar_1649	-	hypothetical protein
1646	 41.94	+2	1508803..1509615	+	270	161529158	-	Nmar_1650	-	hypothetical protein
1647	 35.50	0	1509629..1510321	-	230	161529159	-	Nmar_1651	-	hypothetical protein
1648	 33.55	0	1510361..1513144	+	927	161529160	-	Nmar_1652	-	copper resistance D domain-containing protein
1649	 33.70	0	1513134..1513952	-	272	161529161	-	Nmar_1653	-	ABC-3 protein
1650	 32.78	0	1513955..1514677	-	240	161529162	-	Nmar_1654	-	ABC transporter related
1651	 30.29	-1	1514671..1515591	-	306	161529163	-	Nmar_1655	-	periplasmic solute binding protein
1652	 35.94	0	1515683..1516066	+	127	161529164	-	Nmar_1656	-	CopG family transcriptional regulator
1653	 26.95	-2	1516198..1516479	+	93	161529165	-	Nmar_1657	-	hypothetical protein
1654	 32.70	0	1516880..1517671	+	263	161529166	-	Nmar_1658	-	DSBA oxidoreductase
1655	 39.24	+1	1517700..1518122	-	140	161529167	-	Nmar_1659	-	UspA domain-containing protein
1656	 39.42	+1	1518432..1519400	+	322	161529168	-	Nmar_1660	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
1657	 32.82	0	1519440..1519832	-	130	161529169	-	Nmar_1661	-	HxlR family transcriptional regulator
1658	 37.49	0	1520144..1521322	-	392	161529170	-	Nmar_1662	-	putative metal cation transporter
1659	 37.19	0	1521312..1522373	-	353	161529171	-	Nmar_1663	-	multicopper oxidase type 3
1660	 31.30	0	1522483..1522974	-	163	161529172	-	Nmar_1664	-	DtxR family iron dependent repressor
1661	 37.10	0	1523135..1523638	-	167	161529173	-	Nmar_1665	-	blue (type1) copper domain-containing protein
1662	 35.65	0	1523754..1524788	-	344	161529174	-	Nmar_1666	-	kelch repeat-containing protein
1663	 40.76	+1	1525130..1526542	-	470	161529175	-	Nmar_1667	-	hypothetical protein
1664	 34.29	0	1526745..1527371	-	208	161529176	-	Nmar_1668	-	hypothetical protein
1665	 32.66	0	1527377..1528417	-	346	161529177	-	Nmar_1669	-	hypothetical protein
1666	 31.67	0	1529002..1529724	+	240	161529178	-	Nmar_1670	-	DSBA oxidoreductase
1667	 33.65	0	1530045..1531619	+	524	161529179	-	Nmar_1671	-	hypothetical protein
1668	 27.55	-1	1531738..1532256	+	172	161529180	-	Nmar_1672	-	hypothetical protein
1669	 34.55	0	1532270..1533415	-	381	161529181	-	Nmar_1673	-	2-alkenal reductase
1670	 30.65	-1	1533567..1534310	+	247	161529182	-	Nmar_1674	-	transcriptional regulator, TrmB
1671	 29.43	-1	1534532..1534915	-	127	161529183	-	Nmar_1675	-	hypothetical protein
1672	 32.35	0	1534989..1536710	-	573	161529184	-	Nmar_1676	-	hypothetical protein
1673	 28.90	-1	1536711..1537364	-	217	161529185	-	Nmar_1677	-	hypothetical protein
1674	 34.22	0	1537367..1538377	-	336	161529186	-	Nmar_1678	-	blue (type1) copper domain-containing protein
1675	 36.84	0	1539601..1540227	+	208	161529187	-	Nmar_1679	-	hypothetical protein
1676	 32.09	0	1540579..1541460	-	293	161529188	-	Nmar_1680	-	hypothetical protein
1677	 36.07	0	1541870..1542235	+	121	161529189	-	Nmar_1681	-	hypothetical protein
1678	 39.39	+1	1542223..1542552	+	109	161529190	-	Nmar_1682	-	hypothetical protein
1679	 35.76	0	1542607..1543926	-	439	161529191	-	Nmar_1683	-	cell division control protein 6 family protein
1680	 34.06	0	1543991..1545364	-	457	161529192	-	Nmar_1684	-	hypothetical protein
1681	 36.35	0	1545383..1545979	-	198	161529193	-	Nmar_1685	-	hypothetical protein
1682	 34.84	0	1546135..1547064	-	309	161529194	-	Nmar_1686	-	aspartate carbamoyltransferase
1683	 37.45	0	1547106..1547567	+	153	161529195	-	Nmar_1687	-	aspartate carbamoyltransferase regulatory subunit
1684	 41.42	+2	1547603..1547911	-	102	161529196	-	Nmar_1688	-	H+transporting two-sector ATPase C subunit
1685	 35.56	0	1548095..1548724	-	209	161529197	-	Nmar_1689	-	V-type ATPase, D subunit
1686	 38.10	+1	1548729..1550114	-	461	161529198	-	Nmar_1690	-	V-type ATP synthase subunit B
1687	 40.08	+1	1550111..1551889	-	592	161529199	-	Nmar_1691	-	H+transporting two-sector ATPase alpha/beta subunit central region
1688	 34.84	0	1551891..1552487	-	198	161529200	-	Nmar_1692	-	H+transporting two-sector ATPase E subunit
1689	 37.71	0	1552577..1554676	+	699	161529201	-	Nmar_1693	-	V-type ATPase 116 kDa subunit
1690	 32.43	0	1554694..1555470	-	258	161529202	-	Nmar_1694	-	hypothetical protein
1691	 27.79	-1	1555761..1556753	+	330	161529203	-	Nmar_1695	-	putative GAF sensor protein
1692	 38.01	+1	1556756..1557397	-	213	161529204	-	Nmar_1696	-	nitroreductase
1693	 36.68	0	1557401..1558177	-	258	161529205	-	Nmar_1697	-	rhodanese domain-containing protein
1694	 45.27	+2	1558251..1559816	-	521	161529206	-	Nmar_1698	-	ammonium transporter
1695	 35.29	0	1559945..1560610	+	221	161529207	-	Nmar_1699	-	hypothetical protein
1696	 35.46	0	1560670..1561704	+	344	161529208	-	Nmar_1700	-	H(+)-transporting two-sector ATPase
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.