IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1167	 34.38	0	1071457..1071837	+	126	161528679	-	Nmar_1171	-	hypothetical protein
1168	 35.82	0	1071834..1073081	-	415	161528680	-	Nmar_1172	-	vitamin K-dependent gamma-carboxylase
1169	 35.61	0	1073273..1073404	+	43	161528681	-	Nmar_1173	-	hypothetical protein
1170	 33.95	0	1073391..1073876	+	161	161528682	-	Nmar_1174	-	hypothetical protein
1171	 32.78	0	1073932..1074471	+	179	161528683	-	Nmar_1175	-	inorganic diphosphatase
1172	 35.27	0	1074473..1074730	+	85	161528684	-	Nmar_1176	-	zinc finger UBP-type protein
1173	 31.36	0	1075014..1076786	+	590	161528685	-	Nmar_1177	-	pepF/M3 family oligoendopeptidase
1174	 32.64	0	1076902..1077474	-	190	161528686	-	Nmar_1178	-	hypothetical protein
1175	 32.37	0	1077622..1078767	+	381	161528687	-	Nmar_1179	-	hypothetical protein
1176	 36.78	0	1078768..1079319	-	183	161528688	-	Nmar_1180	-	arginine decarboxylase, pyruvoyl-dependent
1177	 34.71	0	1079893..1080690	+	265	161528689	-	Nmar_1181	-	DSBA oxidoreductase
1178	 37.79	+1	1080792..1082114	+	440	161528690	-	Nmar_1182	-	DEAD/DEAH box helicase domain-containing protein
1179	 33.76	0	1082163..1082396	+	77	161528691	-	Nmar_1183	-	AsnC/Lrp family regulatory protein
1180	 35.40	0	1082430..1082720	+	96	161528692	-	Nmar_1184	-	hypothetical protein
1181	 29.89	-1	1082717..1083412	+	231	161528693	-	Nmar_1185	-	hypothetical protein
1182	 32.28	0	1083465..1084223	+	252	161528694	-	Nmar_1186	-	hypothetical protein
1183	 30.26	-1	1084186..1084641	-	151	161528695	-	Nmar_1187	-	hypothetical protein
1184	 33.08	0	1084732..1085529	+	265	161528696	-	Nmar_1188	-	hypothetical protein
1185	 31.01	0	1085567..1085911	+	114	161528697	-	Nmar_1189	-	hypothetical protein
1186	 32.95	0	1086156..1086416	+	86	161528698	-	Nmar_1190	-	hypothetical protein
1187	 33.88	0	1086413..1088440	-	675	161528699	-	Nmar_1191	-	hypothetical protein
1188	 36.32	0	1088479..1088712	-	77	161528700	-	Nmar_1192	-	hypothetical protein
1189	 35.85	0	1088792..1089826	+	344	161528701	-	Nmar_1193	-	alcohol dehydrogenase
1190	 36.74	0	1090267..1090794	-	175	161528702	-	Nmar_1194	-	hypothetical protein
1191	 36.55	0	1090876..1091124	+	82	161528703	-	Nmar_1195	-	hypothetical protein
1192	 33.77	0	1091128..1091814	-	228	161528704	-	Nmar_1196	-	hypothetical protein
1193	 29.44	-1	1092124..1092354	-	76	161528705	-	Nmar_1197	-	AsnC family transcriptional regulator
1194	 29.99	-1	1092421..1093617	-	398	161528706	-	Nmar_1198	-	tRNA pseudouridine synthase D TruD
1195	 35.52	0	1093614..1095215	-	533	161528707	-	Nmar_1199	-	hypothetical protein
1196	 38.93	+1	1095261..1095635	-	124	161528708	-	Nmar_1200	-	peptidyl-tRNA hydrolase
1197	 42.34	+2	1096377..1101503	-	1708	161528709	-	Nmar_1201	-	hypothetical protein
1198	 35.47	0	1101856..1102230	+	124	161528710	-	Nmar_1202	-	response regulator receiver protein
1199	 36.56	0	1102252..1103118	-	288	161528711	-	Nmar_1203	-	hypothetical protein
1200	 38.36	+1	1103274..1104188	+	304	161528712	-	Nmar_1204	-	hypothetical protein
1201	 34.75	0	1104185..1105030	+	281	161528713	-	Nmar_1205	-	hypothetical protein
1202	 37.67	0	1105027..1105464	-	145	161528714	-	Nmar_1206	-	response regulator receiver protein
1203	 36.56	0	1105436..1107169	-	577	161528715	-	Nmar_1207	-	histidine kinase
1204	 37.07	0	1107755..1108102	+	115	161528716	-	Nmar_1208	-	hypothetical protein
1205	 39.62	+1	1108392..1108916	+	174	161528717	-	Nmar_1209	-	hypothetical protein
1206	 31.34	0	1109414..1110718	-	434	161528718	-	Nmar_1210	-	metal dependent phosphohydrolase
1207	 31.17	0	1110705..1111259	-	184	161528719	-	Nmar_1211	-	hypothetical protein
1208	 28.04	-1	1111485..1112732	+	415	161528720	-	Nmar_1212	-	metallophosphoesterase
1209	 24.25	-2	1112729..1115149	+	806	161528721	-	Nmar_1213	-	SMC domain-containing protein
1210	 31.12	0	1115220..1116212	-	330	161528722	-	Nmar_1214	-	cobyrinic acid ac-diamide synthase
1211	 35.32	0	1116612..1117013	-	133	161528723	-	Nmar_1215	-	hypothetical protein
1212	 32.40	0	1117006..1118508	-	500	161528724	-	Nmar_1216	-	hypothetical protein
1213	 30.47	-1	1118505..1118783	-	92	161528725	-	Nmar_1217	-	hypothetical protein
1214	 30.19	-1	1118837..1119916	+	359	161528726	-	Nmar_1218	-	hypothetical protein
1215	 41.67	+2	1119907..1120962	-	351	161528727	-	Nmar_1219	-	integrase family protein
1216	 33.51	0	1121044..1122180	+	378	161528728	-	Nmar_1220	-	dehydrogenase (flavoprotein)-like protein
1217	 37.21	0	1122289..1122417	+	42	161528729	-	Nmar_1221	-	hypothetical protein
1218	 35.82	0	1122422..1122703	+	93	161528730	-	Nmar_1222	-	translation elongation factor aEF-1 beta
1219	 36.43	0	1122715..1124880	+	721	161528731	-	Nmar_1223	-	AAA family ATPase, CDC48 subfamily protein
1220	 33.33	0	1124883..1125179	+	98	161528732	-	Nmar_1224	-	hypothetical protein
1221	 37.59	0	1125183..1126052	-	289	161528733	-	Nmar_1225	-	protoheme IX farnesyltransferase
1222	 40.02	+1	1126185..1127261	+	358	161528734	-	Nmar_1226	-	blue (type1) copper domain-containing protein
1223	 30.79	-1	1127264..1127656	+	130	161528735	-	Nmar_1227	-	Mov34/MPN/PAD-1 family protein
1224	 35.42	0	1127657..1128040	-	127	161528736	-	Nmar_1228	-	hypothetical protein
1225	 40.31	+1	1128090..1128347	+	85	161528737	-	Nmar_1229	-	hypothetical protein
1226	 33.33	0	1128406..1128594	+	62	161528738	-	Nmar_1230	-	hypothetical protein
1227	 38.73	+1	1128591..1130630	-	679	161528739	-	Nmar_1231	-	membrane-bound proton-translocating pyrophosphatase
1228	 37.04	0	1130666..1131043	-	125	161528740	-	Nmar_1232	-	hypothetical protein
1229	 34.62	0	1131195..1131659	-	154	161528741	-	Nmar_1233	-	hypothetical protein
1230	 36.84	0	1131701..1132813	-	370	161528742	-	Nmar_1234	-	hypothetical protein
1231	 36.35	0	1132962..1133558	+	198	161528743	-	Nmar_1235	-	DNA-directed RNA polymerase subunit E'
1232	 35.98	0	1133560..1133748	+	62	161528744	-	Nmar_1236	-	DNA-directed RNA polymerase subunit E, RpoE2
1233	 32.72	0	1133788..1134606	+	272	161528745	-	Nmar_1237	-	nicotinate-nucleotide pyrophosphorylase
1234	 30.79	-1	1134603..1134995	-	130	161528746	-	Nmar_1238	-	TPR repeat-containing protein
1235	 34.38	0	1135009..1135965	-	318	161528747	-	Nmar_1239	-	quinolinate synthetase complex, A subunit
1236	 34.92	0	1136059..1136877	-	272	161528748	-	Nmar_1240	-	aspartate dehydrogenase
1237	 33.23	0	1136958..1137911	+	317	161528749	-	Nmar_1241	-	hypothetical protein
1238	 33.33	0	1137977..1138813	+	278	161528750	-	Nmar_1242	-	hypothetical protein
1239	 34.51	0	1138810..1140342	+	510	161528751	-	Nmar_1243	-	hypothetical protein
1240	 34.47	0	1140342..1141484	+	380	161528752	-	Nmar_1244	-	metallophosphoesterase
1241	 32.32	0	1141481..1143562	+	693	161528753	-	Nmar_1245	-	SMC domain-containing protein
1242	 31.98	0	1143628..1144143	+	171	161528754	-	Nmar_1246	-	hypothetical protein
1243	 29.43	-1	1144197..1145837	+	546	161528755	-	Nmar_1247	-	histidine kinase
1244	 31.07	0	1145914..1146222	+	102	161528756	-	Nmar_1248	-	response regulator receiver protein
1245	 28.65	-1	1146219..1147073	-	284	161528757	-	Nmar_1249	-	hypothetical protein
1246	 41.11	+1	1147717..1148436	-	239	161528758	-	Nmar_1250	-	protease inhibitor Kazal-type
1247	 36.81	0	1148438..1148926	-	162	161528759	-	Nmar_1251	-	HEAT repeat-containing PBS lyase
1248	 34.68	0	1149023..1149688	+	221	161528760	-	Nmar_1252	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1249	 32.95	0	1149923..1150696	-	257	161528761	-	Nmar_1253	-	hypothetical protein
1250	 40.43	+1	1150749..1151213	-	154	161528762	-	Nmar_1254	-	50S ribosomal protein L15e
1251	 32.88	0	1151421..1152080	+	219	161528763	-	Nmar_1255	-	hypothetical protein
1252	 31.59	0	1152077..1152592	+	171	161528764	-	Nmar_1256	-	hypothetical protein
1253	 35.79	0	1152589..1153482	-	297	161528765	-	Nmar_1257	-	hypothetical protein
1254	 36.12	0	1153583..1154515	-	310	161528766	-	Nmar_1258	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1255	 41.05	+1	1154583..1155995	-	470	161528767	-	Nmar_1259	-	hypothetical protein
1256	 35.02	0	1156106..1157467	+	453	161528768	-	Nmar_1260	-	fumarate lyase
1257	 37.51	0	1157471..1158739	+	422	161528769	-	Nmar_1261	-	MiaB-like tRNA modifying enzyme
1258	 35.54	0	1158813..1159763	+	316	161528770	-	Nmar_1262	-	tubulin/FtsZ GTPase
1259	 36.35	0	1159800..1160363	-	187	161528771	-	Nmar_1263	-	ribosomal protein L31e
1260	 41.51	+2	1160364..1160522	-	52	161528772	-	Nmar_1264	-	ribosomal protein L39e
1261	 33.88	0	1160560..1161111	-	183	161528773	-	Nmar_1265	-	NUDIX hydrolase
1262	 30.62	-1	1161181..1161918	+	245	161528774	-	Nmar_1266	-	5 10-methylenetetrahydrofolate reductase-like protein
1263	 35.97	0	1161915..1164413	-	832	161528775	-	Nmar_1267	-	methionine synthase
1264	 36.45	0	1164446..1165408	-	320	161528776	-	Nmar_1268	-	homocysteine S-methyltransferase
1265	 37.68	0	1165474..1166622	+	382	161528777	-	Nmar_1269	-	major facilitator transporter
1266	 36.11	0	1166630..1166953	-	107	161528778	-	Nmar_1270	-	hypothetical protein
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.