IslandPathversion 1.0

IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.31 STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1079	 33.66	0	985476..985778	-	100	161528591	-	Nmar_1083	-	hypothetical protein
1080	 30.80	-1	985813..986562	+	249	161528592	-	Nmar_1084	-	metallophosphoesterase
1081	 37.00	0	986566..989808	-	1080	161528593	-	Nmar_1085	-	carbamoyl-phosphate synthase, large subunit
1082	 35.76	0	989810..990964	-	384	161528594	-	Nmar_1086	-	carbamoyl-phosphate synthase, small subunit
1083	 32.50	0	991041..992597	-	518	161528595	-	Nmar_1087	-	hypothetical protein
1084	 37.44	0	992659..993852	-	397	161528596	-	Nmar_1088	-	ATPase central domain-containing protein
1085	 30.94	0	993863..994363	-	166	161528597	-	Nmar_1089	-	hypothetical protein
1086	 32.26	0	994351..994908	-	185	161528598	-	Nmar_1090	-	hypothetical protein
1087	 33.68	0	995066..996226	+	386	161528599	-	Nmar_1091	-	transcriptional regulator, TrmB
1088	 36.62	0	996256..996711	+	151	161528600	-	Nmar_1092	-	endoribonuclease L-PSP
1089	 35.68	0	996775..998052	+	425	161528601	-	Nmar_1093	-	sodium:dicarboxylate symporter
1090	 33.84	0	998322..998714	+	130	161528602	-	Nmar_1094	-	pyridoxamine 5'-phosphate oxidase family protein
1091	 37.83	+1	998697..999185	-	162	161528603	-	Nmar_1095	-	hypothetical protein
1092	 36.08	0	999182..1000309	-	375	161528604	-	Nmar_1096	-	hypothetical protein
1093	 37.36	0	1000385..1000831	+	148	161528605	-	Nmar_1097	-	DoxX family protein
1094	 32.98	0	1000832..1001974	-	380	161528606	-	Nmar_1098	-	phosphoesterase DHHA1
1095	 36.60	0	1002328..1003491	+	387	161528607	-	Nmar_1099	-	2-methylcitrate synthase/citrate synthase II
1096	 35.27	0	1003495..1003701	-	68	161528608	-	Nmar_1100	-	hypothetical protein
1097	 27.59	-1	1003778..1004125	+	115	161528609	-	Nmar_1101	-	hypothetical protein
1098	 42.01	+2	1004439..1005395	+	318	161528610	-	Nmar_1102	-	blue (type1) copper domain-containing protein
1099	 31.51	0	1005416..1007002	-	528	161528611	-	Nmar_1103	-	excinuclease ABC subunit C
1100	 34.72	0	1006999..1009818	-	939	161528612	-	Nmar_1104	-	excinuclease ABC, A subunit
1101	 34.77	0	1009805..1011757	-	650	161528613	-	Nmar_1105	-	excinuclease ABC subunit B
1102	 35.64	0	1011807..1012457	-	216	161528614	-	Nmar_1106	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1103	 32.40	0	1012916..1013344	+	142	161528615	-	Nmar_1107	-	hypothetical protein
1104	 32.50	0	1013339..1013578	-	79	161528616	-	Nmar_1108	-	hypothetical protein
1105	 37.13	0	1013628..1014734	-	368	161528617	-	Nmar_1109	-	luciferase family protein
1106	 36.83	0	1014829..1015773	-	314	161528618	-	Nmar_1110	-	iron-containing alcohol dehydrogenase
1107	 32.00	0	1015826..1017103	+	425	161528619	-	Nmar_1111	-	hydroxypyruvate reductase
1108	 32.07	0	1017166..1017402	+	78	161528620	-	Nmar_1112	-	hypothetical protein
1109	 35.40	0	1017395..1018360	-	321	161528621	-	Nmar_1113	-	hypothetical protein
1110	 32.99	0	1018479..1019054	+	191	161528622	-	Nmar_1114	-	phosphoribosylglycinamide formyltransferase
1111	 31.46	0	1019051..1019371	-	106	161528623	-	Nmar_1115	-	cupin 2 domain-containing protein
1112	 34.74	0	1019373..1019657	-	94	161528624	-	Nmar_1116	-	antibiotic biosynthesis monooxygenase
1113	 35.76	0	1019750..1020613	+	287	161528625	-	Nmar_1117	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
1114	 31.74	0	1020603..1021166	+	187	161528626	-	Nmar_1118	-	5-formyltetrahydrofolate cyclo-ligase
1115	 35.86	0	1021157..1022422	-	421	161528627	-	Nmar_1119	-	phosphoribosylamine--glycine ligase
1116	 35.08	0	1022506..1025703	+	1065	161528628	-	Nmar_1120	-	isoleucyl-tRNA synthetase
1117	 37.93	+1	1025889..1026476	+	195	161528629	-	Nmar_1121	-	DNA protection protein DPS
1118	 36.36	0	1026579..1026908	+	109	161528630	-	Nmar_1122	-	hypothetical protein
1119	 36.04	0	1026949..1028055	+	368	161528631	-	Nmar_1123	-	succinate--CoA ligase (ADP-forming)
1120	 38.24	+1	1028052..1028969	+	305	161528632	-	Nmar_1124	-	CoA-binding domain-containing protein
1121	 40.48	+1	1029001..1029168	+	55	161528633	-	Nmar_1125	-	50S ribosomal protein L40e
1122	 31.33	0	1029171..1029419	-	82	161528634	-	Nmar_1126	-	hypothetical protein
1123	 38.33	+1	1029839..1030519	+	226	161528635	-	Nmar_1127	-	hypothetical protein
1124	 34.57	0	1030587..1031477	-	296	161528636	-	Nmar_1128	-	periplasmic solute binding protein
1125	 37.95	+1	1031846..1033210	-	454	161528637	-	Nmar_1129	-	hypothetical protein
1126	 37.40	0	1033565..1034743	-	392	161528638	-	Nmar_1130	-	putative metal cation transporter
1127	 37.69	0	1034733..1035788	-	351	161528639	-	Nmar_1131	-	multicopper oxidase type 3
1128	 33.75	0	1035937..1036419	-	160	161528640	-	Nmar_1132	-	DtxR family iron dependent repressor
1129	 41.03	+1	1036866..1037891	+	341	161528641	-	Nmar_1133	-	kelch repeat-containing protein
1130	 33.02	0	1037921..1038244	-	107	161528642	-	Nmar_1134	-	hypothetical protein
1131	 35.12	0	1038395..1040071	-	558	161528643	-	Nmar_1135	-	spermine synthase
1132	 35.63	0	1040200..1041807	-	535	161528644	-	Nmar_1136	-	multicopper oxidase type 3
1133	 35.22	0	1041992..1042363	+	123	161528645	-	Nmar_1137	-	hypothetical protein
1134	 37.34	0	1042803..1043501	-	232	161528646	-	Nmar_1138	-	hypothetical protein
1135	 30.00	-1	1043604..1043813	-	69	161528647	-	Nmar_1139	-	hypothetical protein
1136	 33.04	0	1044115..1044795	-	226	161528648	-	Nmar_1140	-	protein-disulfide isomerase-like protein
1137	 35.82	0	1044800..1045402	-	200	161528649	-	Nmar_1141	-	hypothetical protein
1138	 35.71	0	1045689..1046150	+	153	161528650	-	Nmar_1142	-	blue (type1) copper domain-containing protein
1139	 37.54	0	1046241..1046906	+	221	161528651	-	Nmar_1143	-	DSBA oxidoreductase
1140	 38.24	+1	1046995..1047993	+	332	161528652	-	Nmar_1144	-	cytochrome c biogenesis protein transmembrane region
1141	 33.66	0	1048048..1048350	+	100	161528653	-	Nmar_1145	-	glutaredoxin
1142	 37.60	0	1048465..1049589	-	374	161528654	-	Nmar_1146	-	2-alkenal reductase
1143	 33.33	0	1049659..1050102	-	147	161528655	-	Nmar_1147	-	AsnC family transcriptional regulator
1144	 39.35	+1	1050213..1051010	-	265	161528656	-	Nmar_1148	-	DSBA oxidoreductase
1145	 35.94	0	1051125..1051814	-	229	161528657	-	Nmar_1149	-	hypothetical protein
1146	 34.54	0	1052123..1052866	-	247	161528658	-	Nmar_1150	-	DSBA oxidoreductase
1147	 36.47	0	1053177..1053431	+	84	161528659	-	Nmar_1151	-	hypothetical protein
1148	 30.00	-1	1053652..1053921	+	89	161528660	-	Nmar_1152	-	hypothetical protein
1149	 34.33	0	1054157..1054858	-	233	161528661	-	Nmar_1153	-	high-affinity nickel-transporter
1150	 36.61	0	1055312..1056625	-	437	161528662	-	Nmar_1154	-	hypothetical protein
1151	 33.33	0	1056647..1057015	+	122	161528663	-	Nmar_1155	-	ArsR family transcriptional regulator
1152	 39.48	+1	1057094..1057711	+	205	161528664	-	Nmar_1156	-	cation efflux protein
1153	 31.68	0	1057913..1059058	+	381	161528665	-	Nmar_1157	-	hypothetical protein
1154	 35.20	0	1059089..1060267	-	392	161528666	-	Nmar_1158	-	hypothetical protein
1155	 30.26	-1	1060419..1061363	-	314	161528667	-	Nmar_1159	-	hypothetical protein
1156	 32.98	0	1061437..1062276	+	279	161528668	-	Nmar_1160	-	Gp37Gp68 family protein
1157	 36.03	0	1062348..1063718	-	456	161528669	-	Nmar_1161	-	hypothetical protein
1158	 36.20	0	1064164..1064547	-	127	161528670	-	Nmar_1162	-	hypothetical protein
1159	 40.69	+1	1064544..1064774	-	76	161528671	-	Nmar_1163	-	hypothetical protein
1160	 40.46	+1	1065590..1066066	-	158	161528672	-	Nmar_1164	-	hypothetical protein
1161	 41.18	+1	1066715..1067632	-	305	161528673	-	Nmar_1165	-	MT-A70 family protein
1162	 37.08	0	1067629..1067868	-	79	161528674	-	Nmar_1166	-	nuclease
1163	 38.48	+1	1067868..1068353	-	161	161528675	-	Nmar_1167	-	hypothetical protein
1164	 33.48	0	1068658..1069332	+	224	161528676	-	Nmar_1168	-	hypothetical protein
1165	 41.06	+1	1069322..1070524	-	400	161528677	-	Nmar_1169	-	integrase family protein
1166	 32.60	0	1070692..1071237	+	181	161528678	-	Nmar_1170	-	NAD(P)H dehydrogenase (quinone)
1167	 34.38	0	1071457..1071837	+	126	161528679	-	Nmar_1171	-	hypothetical protein
1168	 35.82	0	1071834..1073081	-	415	161528680	-	Nmar_1172	-	vitamin K-dependent gamma-carboxylase
1169	 35.61	0	1073273..1073404	+	43	161528681	-	Nmar_1173	-	hypothetical protein
1170	 33.95	0	1073391..1073876	+	161	161528682	-	Nmar_1174	-	hypothetical protein
1171	 32.78	0	1073932..1074471	+	179	161528683	-	Nmar_1175	-	inorganic diphosphatase
1172	 35.27	0	1074473..1074730	+	85	161528684	-	Nmar_1176	-	zinc finger UBP-type protein
1173	 31.36	0	1075014..1076786	+	590	161528685	-	Nmar_1177	-	pepF/M3 family oligoendopeptidase
1174	 32.64	0	1076902..1077474	-	190	161528686	-	Nmar_1178	-	hypothetical protein
1175	 32.37	0	1077622..1078767	+	381	161528687	-	Nmar_1179	-	hypothetical protein
1176	 36.78	0	1078768..1079319	-	183	161528688	-	Nmar_1180	-	arginine decarboxylase, pyruvoyl-dependent
1177	 34.71	0	1079893..1080690	+	265	161528689	-	Nmar_1181	-	DSBA oxidoreductase
1178	 37.79	+1	1080792..1082114	+	440	161528690	-	Nmar_1182	-	DEAD/DEAH box helicase domain-containing protein
34.31	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.