IslandPath Analysis: Nitrosopumilus maritimus SCM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.31   STD DEV: 3.47
Nitrosopumilus maritimus SCM1, complete genome - 1..1645259
1795 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
56	 36.06	0	45126..45602	+	158	161527568	-	Nmar_0056	-	hypothetical protein
57	 34.52	0	45627..46217	+	196	161527569	-	Nmar_0057	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
58	 33.20	0	46253..46975	+	240	161527570	-	Nmar_0058	-	precorrin-2 C20-methyltransferase
59	 32.04	0	46968..47738	+	256	161527571	-	Nmar_0059	-	precorrin-4 C11-methyltransferase
60	 26.72	-2	47719..48474	-	251	161527572	-	Nmar_0060	-	glutamate racemase
61	 43.16	+2	48580..49230	+	216	161527573	-	Nmar_0061	-	hypothetical protein
62	 29.97	-1	49278..50438	-	386	161527574	-	Nmar_0062	-	glycosyl transferase family protein
63	 33.61	0	50600..52057	-	485	161527575	-	Nmar_0063	-	glycyl-tRNA synthetase
64	 31.90	0	52088..52927	-	279	161527576	-	Nmar_0064	-	apurinic endonuclease Apn1
65	 33.72	0	53013..54038	+	341	161527577	-	Nmar_0065	-	DNA primase, large subunit
66	 28.79	-1	54038..55159	+	373	161527578	-	Nmar_0066	-	DNA primase small subunit
67	 35.01	0	55201..58062	+	953	161527579	-	Nmar_0067	-	hypothetical protein
68	 26.70	-2	58063..58605	+	180	161527580	-	Nmar_0068	-	glutamine amidotransferase class-I
69	 30.22	-1	58640..59602	+	320	161527581	-	Nmar_0069	-	TPR repeat-containing protein
70	 34.48	0	59729..59902	+	57	161527582	-	Nmar_0070	-	hypothetical protein
71	 35.51	0	60101..60514	+	137	161527583	-	Nmar_0071	-	ribosomal protein S6e
72	 35.31	0	60546..61808	+	420	161527584	-	Nmar_0072	-	translation initiation factor IF-2 subunit gamma
73	 24.12	-2	61801..62169	+	122	161527585	-	Nmar_0073	-	hypothetical protein
74	 33.78	0	62205..62654	+	149	161527586	-	Nmar_0074	-	PEBP family protein
75	 31.74	0	62723..64861	+	712	161527587	-	Nmar_0075	-	dolichyl-diphosphooligosaccharide--protein glycotransferase
76	 27.56	-1	64864..65019	-	51	161527588	-	Nmar_0076	-	RNA-binding protein Nop10p
77	 29.32	-1	65021..65818	-	265	161527589	-	Nmar_0077	-	RNA-binding S1 domain-containing protein
78	 31.83	0	65859..66389	-	176	161527590	-	Nmar_0078	-	cob(I)alamin adenosyltransferase
79	 29.05	-1	66477..67829	+	450	161527591	-	Nmar_0079	-	cobyrinic acid a,c-diamide synthase
80	 35.51	0	67818..68459	-	213	161527592	-	Nmar_0080	-	precorrin-8X methylmutase CbiC/CobH
81	 30.15	-1	68449..69201	-	250	161527593	-	Nmar_0081	-	cobalamin (vitamin B12) biosynthesis CbiX protein
82	 31.81	0	69198..70250	-	350	161527594	-	Nmar_0082	-	cobalamin (vitamin B12) biosynthesis CbiG protein
83	 33.98	0	70282..71367	-	361	161527595	-	Nmar_0083	-	cobalamin biosynthesis protein CbiD
84	 27.82	-1	71458..72327	+	289	161527596	-	Nmar_0084	-	NAD-dependent epimerase/dehydratase
85	 34.88	0	72304..73470	-	388	161527597	-	Nmar_0085	-	methionine adenosyltransferase
86	 32.11	0	73486..73731	-	81	161527598	-	Nmar_0086	-	like-Sm ribonucleoprotein core
87	 25.84	-2	73840..74493	+	217	161527599	-	Nmar_0087	-	RecA/RadA recombinase-like protein
88	 31.77	0	74592..77333	+	913	161527600	-	Nmar_0088	-	DEAD/DEAH box helicase domain-containing protein
89	 32.98	0	77330..78730	-	466	161527601	-	Nmar_0089	-	nucleic acid binding OB-fold tRNA/helicase-type
90	 32.06	0	78944..79882	+	312	161527602	-	Nmar_0090	-	ABC transporter related
91	 32.28	0	79866..80627	+	253	161527603	-	Nmar_0091	-	ABC-2 type transporter
92	 30.09	-1	80633..81373	-	246	161527604	-	Nmar_0092	-	UDP-glucose/GDP-mannose dehydrogenase
93	 28.49	-1	81548..82600	-	350	161527605	-	Nmar_0093	-	hypothetical protein
94	 31.84	0	82664..83803	+	379	161527606	-	Nmar_0094	-	hypothetical protein
95	 27.84	-1	83839..84402	+	187	161527607	-	Nmar_0095	-	GrpE protein
96	 36.37	0	84405..86315	+	636	161527608	-	Nmar_0096	-	chaperone protein DnaK
97	 35.73	0	86365..87450	+	361	161527609	-	Nmar_0097	-	chaperone protein DnaJ
98	 29.03	-1	87456..87989	+	177	161527610	-	Nmar_0098	-	hypothetical protein
99	 29.82	-1	88308..90212	-	634	161527611	-	Nmar_0099	-	glutamyl-tRNA(Gln) amidotransferase subunit E
100	 32.71	0	90221..91510	-	429	161527612	-	Nmar_0100	-	glutamyl-tRNA(Gln) amidotransferase subunit D
101	 36.38	0	91543..93711	-	722	161527613	-	Nmar_0101	-	AAA family ATPase, CDC48 subfamily protein
102	 40.27	+1	93816..94550	+	244	161527614	-	Nmar_0102	-	50S ribosomal protein L2P
103	 34.77	0	94601..94879	+	92	161527615	-	Nmar_0103	-	acylphosphatase
104	 27.03	-2	94876..95208	-	110	161527616	-	Nmar_0104	-	hypothetical protein
105	 31.37	0	95588..96502	-	304	161527617	-	Nmar_0105	-	PP-loop domain-containing protein
106	 24.86	-2	96623..97543	+	306	161527618	-	Nmar_0106	-	methyltransferase type 12
107	 33.33	0	97656..98852	-	398	161527619	-	Nmar_0107	-	peptidase M50
108	 24.68	-2	98896..99207	+	103	161527620	-	Nmar_0108	-	CutA1 divalent ion tolerance protein
109	 29.90	-1	99204..100253	-	349	161527621	-	Nmar_0109	-	eRF1 domain-containing 1 protein
110	 32.13	0	100286..100699	-	137	161527622	-	Nmar_0110	-	hypothetical protein
111	 31.57	0	100838..101290	+	150	161527623	-	Nmar_0111	-	hypothetical protein
112	 38.18	+1	101295..101459	-	54	161527624	-	Nmar_0112	-	hypothetical protein
113	 36.42	0	101499..101951	-	150	161527625	-	Nmar_0113	-	DtxR family iron dependent repressor
114	 32.55	0	101953..102720	-	255	161527626	-	Nmar_0114	-	transcriptional regulator, TrmB
115	 35.36	0	102822..104501	+	559	161527627	-	Nmar_0115	-	radical SAM domain-containing protein
116	 29.73	-1	104553..105578	+	341	161527628	-	Nmar_0116	-	glycosyl transferase group 1
117	 28.77	-1	105630..106637	+	335	161527629	-	Nmar_0117	-	polysaccharide biosynthesis protein CapD
118	 23.66	-2	106639..108219	-	526	161527630	-	Nmar_0118	-	hypothetical protein
119	 29.90	-1	108318..109481	-	387	161527631	-	Nmar_0119	-	polysaccharide biosynthesis protein
120	 27.58	-1	109495..110676	-	393	161527632	-	Nmar_0120	-	glycosyl transferase group 1
121	 22.18	-2	110737..111624	-	295	161527633	-	Nmar_0121	-	NAD-dependent epimerase/dehydratase
122	 27.51	-1	111720..112664	+	314	161527634	-	Nmar_0122	-	NAD-dependent epimerase/dehydratase
123	 24.98	-2	112659..113699	-	346	161527635	-	Nmar_0123	-	glycosyl transferase family protein
124	 27.37	-2	113741..114796	-	351	161527636	-	Nmar_0124	-	glucose-1-phosphate thymidyltransferase
125	 26.36	-2	114842..115831	-	329	161527637	-	Nmar_0125	-	dTDP-glucose 4,6-dehydratase
126	 29.19	-1	116426..117607	-	393	161527638	-	Nmar_0126	-	GDSL family lipase
127	 33.98	0	117608..119311	-	567	161527639	-	Nmar_0127	-	carbamoyltransferase
128	 26.44	-2	119311..119658	-	115	161527640	-	Nmar_0128	-	hypothetical protein
129	 24.84	-2	119660..119812	-	50	161527641	-	Nmar_0129	-	hypothetical protein
130	 29.59	-1	119962..120735	-	257	161527642	-	Nmar_0130	-	hypothetical protein
131	 31.25	0	120842..121897	+	351	161527643	-	Nmar_0131	-	N-acylneuraminate-9-phosphate synthase
132	 28.47	-1	121900..122988	-	362	161527644	-	Nmar_0132	-	glutamine--scyllo-inositol transaminase
133	 21.80	-2	122985..123383	-	132	161527645	-	Nmar_0133	-	hypothetical protein
134	 26.77	-2	123483..124076	+	197	161527646	-	Nmar_0134	-	methionyl-tRNA formyltransferase-like protein
135	 24.51	-2	124078..124836	+	252	161527647	-	Nmar_0135	-	acylneuraminate cytidylyltransferase
136	 25.31	-2	124833..125879	-	348	161527648	-	Nmar_0136	-	oxidoreductase domain-containing protein
137	 26.88	-2	125943..127181	-	412	161527649	-	Nmar_0137	-	aminopeptidase domain-containing protein
138	 22.99	-2	127275..127622	+	115	161527650	-	Nmar_0138	-	4'-phosphopantetheinyl transferase
139	 22.94	-2	127631..129448	-	605	161527651	-	Nmar_0139	-	hypothetical protein
140	 29.37	-1	129568..130626	+	352	161527652	-	Nmar_0140	-	pyruvate carboxyltransferase
141	 23.94	-2	130601..132058	+	485	161527653	-	Nmar_0141	-	AMP-dependent synthetase and ligase
142	 29.61	-1	132142..132786	+	214	161527654	-	Nmar_0142	-	cyclase family protein
143	 23.17	-2	132804..133049	+	81	161527655	-	Nmar_0143	-	hypothetical protein
144	 27.61	-1	133033..133818	+	261	161527656	-	Nmar_0144	-	aminoglycoside N3'-acetyltransferase
145	 30.26	-1	133802..134257	-	151	161527657	-	Nmar_0145	-	hypothetical protein
146	 29.90	-1	134267..135256	-	329	161527658	-	Nmar_0146	-	polysaccharide biosynthesis protein CapD
147	 23.61	-2	135375..136670	+	431	161527659	-	Nmar_0147	-	hypothetical protein
148	 33.03	0	136667..137995	+	442	161527660	-	Nmar_0148	-	aminotransferase class-III
149	 25.40	-2	138001..138744	-	247	161527661	-	Nmar_0149	-	acylneuraminate cytidylyltransferase
150	 32.83	0	138746..139729	-	327	161527662	-	Nmar_0150	-	NAD-dependent epimerase/dehydratase
151	 28.87	-1	141684..142691	+	335	161527663	-	Nmar_0153	-	oxidoreductase domain-containing protein
152	 29.23	-1	142688..144052	+	454	161527664	-	Nmar_0154	-	sulfatase
153	 31.59	0	144143..145516	+	457	161527665	-	Nmar_0155	-	helix-turn-helix domain-containing protein
154	 28.00	-1	145547..146671	+	374	161527666	-	Nmar_0156	-	sulfatase
155	 25.40	-2	146673..147416	-	247	161527667	-	Nmar_0157	-	sugar nucleotidyltransferase-like protein
34.31	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.