IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.80   STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
942	 56.41	0	1027032..1028162	-	376	121634843	-	NMC1037	-	hypothetical protein
943	 53.73	0	1028332..1029228	+	298	121634844	argB	NMC1038	-	acetylglutamate kinase
944	 54.11	0	1031085..1031753	-	222	121634845	-	NMC1039	-	hypothetical protein
945	 54.64	0	1031750..1032481	-	243	121634846	-	NMC1040	-	hypothetical protein
946	 58.74	0	1032523..1033140	-	205	121634847	-	NMC1041	-	ABC transporter ATP-binding protein
947	 46.67	0	1033116..1033295	+	59	121634848	-	NMC1042	-	hypothetical protein
948	 38.89	-1	1033495..1034394	-	299	121634849	-	NMC1044	-	putative DNA-binding protein
949	 38.49	-1	1034438..1034689	+	83	121634850	-	NMC1045	-	putative DNA-binding protein (phage related)
950	 54.34	0	1034691..1036670	+	659	121634851	-	NMC1046	-	putative phage transposase
951	 50.82	0	1036706..1037620	+	304	121634852	-	NMC1048	-	putative phage transposase
952	 48.45	0	1037686..1037976	+	96	121634853	-	NMC1049	-	hypothetical protein
953	 44.44	-1	1037963..1038088	+	41	121634854	-	NMC1050	-	hypothetical protein
954	 52.87	0	1038085..1038258	+	57	121634855	-	NMC1051	-	hypothetical protein
955	 52.38	0	1038251..1038418	+	55	121634856	-	NMC1052	-	hypothetical protein
956	 35.53	-2	1038482..1038709	+	75	121634857	-	NMC1053	-	hypothetical protein
957	 52.22	0	1038724..1039242	+	172	121634858	gam	NMC1054	-	putative host-nuclease inhibitor protein
958	 51.35	0	1039375..1040340	-	321	121634859	-	NMC1055	-	transposase for IS1655
959	 61.68	+1	1041177..1041737	+	186	121634860	-	NMC1057	-	hypothetical protein
960	 58.21	0	1041748..1043721	+	657	121634861	-	NMC1058	-	putative phage tail fibre protein
961	 59.24	+1	1045258..1045863	+	201	121634862	-	NMC1059	-	hypothetical protein
962	 58.92	+1	1045842..1046138	+	98	121634863	-	NMC1060	-	hypothetical protein
963	 52.27	0	1046454..1047597	-	380	121634864	-	NMC1062	-	ABC transporter ATP-binding protein
964	 54.17	0	1048039..1048686	-	215	121634865	-	NMC1063	-	putative periplasmic protein
965	 52.42	0	1048683..1049054	-	123	121634866	-	NMC1065	-	putative periplasmic protein
966	 52.98	0	1049061..1049732	-	223	121634867	-	NMC1066	-	putative periplasmic protein
967	 58.47	0	1049897..1050616	-	239	121634868	-	NMC1067	-	short chain dehydrogenase
968	 64.99	+1	1050699..1052012	-	437	121634869	-	NMC1068	-	putative oxidoreductase
969	 53.95	0	1052409..1053281	-	290	121634870	-	NMC1069	-	putative poly-isoprenyl transferase
970	 58.20	0	1053296..1055314	+	672	121634871	hscA	NMC1070	-	chaperone protein HscA
971	 49.47	0	1055637..1056200	+	187	121634872	-	NMC1071	-	hypothetical protein
972	 53.10	0	1056483..1056998	+	171	121634873	-	NMC1072	-	hypothetical protein
973	 54.97	0	1057053..1057394	+	113	121634874	fdx	NMC1073	-	putative ferredoxin
974	 55.78	0	1057681..1058268	-	195	121634875	-	NMC1074	-	hypothetical protein
975	 58.08	0	1058481..1058678	+	65	121634876	-	NMC1076	-	hypothetical protein
976	 52.74	0	1058746..1059147	-	133	121634877	-	NMC1077	-	hypothetical protein
977	 52.71	0	1059358..1060317	+	319	121634878	accA	NMC1078	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
978	 52.39	0	1060358..1061695	+	445	121634879	-	NMC1080	-	hypothetical protein
979	 56.23	0	1061769..1062554	+	261	121634880	-	NMC1081	-	putative RNA methyltransferase
980	 42.62	-1	1062605..1062841	+	78	121634881	-	NMC1082	-	putative lipoprotein
981	 36.72	-2	1063023..1063376	+	117	121634882	-	NMC1083	-	hypothetical protein
982	 50.33	0	1063388..1063693	+	101	121634883	-	NMC1084	-	putative periplasmic protein
983	 58.61	0	1063755..1065131	+	458	121634884	mpl	NMC1085	-	putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
984	 56.27	0	1065140..1066390	+	416	121634885	bioB	NMC1087	-	putative biotin synthase
985	 50.75	0	1066374..1067102	-	242	121634886	-	NMC1088	-	hypothetical protein
986	 53.33	0	1067226..1067465	-	79	121634887	-	NMC1089	-	hypothetical protein
987	 58.12	0	1067748..1069607	-	619	121634888	ilvD	NMC1090	-	dihydroxy-acid dehydratase
988	 56.16	0	1069780..1071549	-	589	121634889	cysI	NMC1091	-	sulfite reductase subunit beta
989	 58.79	0	1071576..1073390	-	604	121634890	cysJ	NMC1092	-	putative sulphite reductase alpha subunit
990	 57.42	0	1073387..1074673	-	428	121634891	cysN	NMC1093	-	putative sulphate adenylate transferase subunit 1
991	 58.98	+1	1074712..1075635	-	307	121634892	cysD	NMC1094	-	sulfate adenylyltransferase subunit 2
992	 53.74	0	1075673..1076407	-	244	121634893	cysH	NMC1095	-	phosphoadenosine phosphosulfate reductase
993	 60.54	+1	1076423..1077874	-	483	121634894	cysG	NMC1096	-	sirohaem synthase
994	 55.56	0	1078324..1078980	-	218	121634895	-	NMC1097	-	hypothetical protein
995	 59.03	+1	1079045..1079935	+	296	121634896	-	NMC1098	-	hypothetical protein
996	 57.23	0	1080205..1082016	+	603	121634897	typA	NMC1099	-	putative GTP-binding protein
997	 52.90	0	1083004..1085379	+	791	121634898	vacB	NMC1102	-	putative ribonuclease
998	 57.17	0	1085718..1087181	-	487	121634899	guaB	NMC1103	-	inositol-5-monophosphate dehydrogenase
999	 57.09	0	1087328..1089886	-	852	121634900	glnD	NMC1104	-	putative [protein-PII] uridylyltransferase
1000	 55.45	0	1089935..1090255	-	106	121634901	-	NMC1106	-	transcriptional regulator
1001	 47.47	0	1090579..1091052	-	157	121634902	bfrB	NMC1107	-	bacterioferritin B
1002	 51.83	0	1091080..1091544	-	154	121634903	bfrA	NMC1108	-	bacterioferritin A
1003	 54.81	0	1092007..1093077	-	356	121634904	lipA	NMC1110	-	lipoyl synthase
1004	 54.80	0	1092983..1093555	-	190	121634905	lipB	NMC1111	-	lipoate-protein ligase B
1005	 52.90	0	1093608..1093883	-	91	121634906	-	NMC1112	-	hypothetical protein
1006	 53.31	0	1094068..1095138	+	356	121634907	-	NMC1113	-	putative integral membrane protein
1007	 52.43	0	1095385..1096332	-	315	121634908	-	NMC1114	-	putative periplasmic protein
1008	 52.62	0	1096347..1096766	-	139	121634909	-	NMC1115	-	hypothetical protein
1009	 54.24	0	1096835..1097494	+	219	121634910	-	NMC1116	-	uracil-DNA glycosylase
1010	 50.37	0	1097553..1098086	+	177	121634911	-	NMC1117	-	hypothetical protein
1011	 52.67	0	1098201..1098650	-	149	121634912	-	NMC1118	-	putative transcriptional regulator
1012	 54.02	0	1099113..1100069	-	318	121634913	-	NMC1120	-	putative transposase
1013	 47.31	0	1100551..1100643	+	30	121634914	-	NMC1121	-	hypothetical protein
1014	 48.00	0	1100666..1100815	+	49	121634915	-	NMC1122	-	hypothetical protein
1015	 42.95	-1	1100906..1101061	+	51	121634916	-	NMC1123	-	putative transposase (fragment)
1016	 45.06	0	1101279..1101602	-	107	121634917	-	NMC1124	-	hypothetical protein
1017	 48.45	0	1101647..1102162	-	171	121634918	-	NMC1125	-	putative periplasmic protein
1018	 51.33	0	1102628..1104550	-	640	121634919	-	NMC1126	-	putative ABC transporter ATP-binding protein
1019	 48.61	0	1104627..1105058	-	143	121634920	-	NMC1127	-	hypothetical protein
1020	 54.40	0	1105037..1106503	+	488	121634921	hom	NMC1128	-	homoserine dehydrogenase
1021	 50.57	0	1106496..1106930	+	144	121634922	-	NMC1129	-	hypothetical protein
1022	 54.07	0	1106989..1107258	-	89	121634923	hupB	NMC1130	-	putative DNA-binding protein
1023	 53.53	0	1107440..1109890	-	816	121634924	lon	NMC1131	-	putative ATP-dependent protease
1024	 56.12	0	1110249..1111244	+	331	121634925	-	NMC1132	-	hypothetical protein
1025	 58.02	0	1111272..1113017	-	581	121634926	recD	NMC1133	-	exodeoxyribonuclease V alpha subunit
1026	 58.81	0	1113085..1113771	-	228	121634927	-	NMC1134	-	putative ABC-transporter ATP-binding protein
1027	 54.97	0	1113773..1115020	-	415	121634928	-	NMC1135	-	putative integral membrane protein
1028	 55.33	0	1115213..1115503	+	96	121634929	-	NMC1136	-	putative periplasmic protein
1029	 54.27	0	1115559..1116179	-	206	121634930	recR	NMC1137	-	putative recombination protein
1030	 52.31	0	1116243..1117781	-	512	121634931	-	NMC1138	-	putative peptidyl-prolyl cis-trans isomerase
1031	 52.53	0	1117836..1118210	-	124	121634932	-	NMC1139	-	hypothetical protein
1032	 52.79	0	1118360..1119988	+	542	121634933	-	NMC1140	-	putative ABC-transporter ATP-binding protein
1033	 58.53	0	1120060..1121313	+	417	121634934	cca	NMC1142	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
1034	 53.40	0	1121536..1121844	+	102	121634935	-	NMC1143	-	hypothetical protein
1035	 59.59	+1	1121926..1122957	+	343	121634936	ruvB	NMC1144	-	Holliday junction DNA helicase B
1036	 54.32	0	1122980..1123708	-	242	121634937	rpe	NMC1145	-	ribulose-phosphate 3-epimerase
1037	 53.10	0	1123854..1124288	+	144	121634938	-	NMC1146	-	putative periplasmic protein
1038	 53.70	0	1124301..1125164	-	286	121634939	-	NMC1147	-	hypothetical protein
1039	 53.56	0	1125172..1125789	-	205	161723298	ribC	NMC1148	-	riboflavin synthase subunit alpha
1040	 53.02	0	1125952..1126530	-	192	121634941	-	NMC1149	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
1041	 51.44	0	1126772..1128544	+	590	121634942	-	NMC1150	-	putative two-component system sensor kinase
51.80	MEAN

7.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.