IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
814	 36.90	-2	884729..885991	-	420	121634715	-	NMC0887	-	HlyD family secretion protein
815	 40.30	-1	885993..888089	-	698	121634716	-	NMC0888	-	putative ABC transporter
816	 44.64	-1	888125..888460	-	111	121634717	-	NMC0889	-	putative integral membrane protein
817	 19.76	-2	888453..888872	-	139	121634718	-	NMC0890	-	putative integral membrane protein
818	 32.03	-2	888876..890024	-	382	121634719	-	NMC0891	-	hypothetical protein
819	 27.35	-2	890118..890234	+	38	121634720	-	NMC0892	-	hypothetical protein
820	 35.29	-2	890200..890403	-	67	121634721	-	NMC0893	-	putative ParB protein
821	 38.14	-1	890446..891090	-	213	121634722	parA	NMC0895	-	ParA protein
822	 53.03	0	891437..892411	-	324	121634723	-	NMC0896	-	putative transposase for IS1106A3 (fragment)
823	 54.31	0	893798..896023	-	741	121634724	icd	NMC0897	-	putative isocitrate dehydrogenase
824	 46.59	0	896456..897571	+	371	121634725	lst	NMC0899	-	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase
825	 55.77	0	897736..898194	-	152	121634726	-	NMC0900	-	putative C-type cytochrome
826	 53.04	0	898313..899134	+	273	121634727	-	NMC0901	-	putative oxidoreductase
827	 56.15	0	899185..899631	-	148	121634728	-	NMC0902	-	putative acyl-CoA hydrolase
828	 50.06	0	901047..901833	-	263	121634729	opaD	NMC0903	-	pseudogene (opacity protein)
829	 51.45	0	902518..903483	-	321	121634730	-	NMC0904	-	putative transposase for IS1655
830	 53.10	0	904126..905061	+	311	121634731	pip	NMC0905	-	proline iminopeptidase
831	 57.64	0	905118..906314	-	398	121634732	-	NMC0906	-	putative lipoprotein
832	 60.27	+1	906323..907198	-	291	121634733	dapA	NMC0907	-	dihydrodipicolinate synthase
833	 56.45	0	907487..908896	+	469	121634734	-	NMC0908	-	putative transmembrane transport protein
834	 57.37	0	908958..909710	-	250	121634735	-	NMC0909	-	putative RNA methylase
835	 58.49	0	909776..910264	-	162	121634736	-	NMC0910	-	hypothetical protein
836	 57.08	0	910269..910988	-	239	121634737	-	NMC0911	-	putative cytosine deaminase
837	 56.90	0	910992..911933	-	313	121634738	miaA	NMC0912	-	tRNA delta(2)-isopentenylpyrophosphate transferase
838	 53.13	0	912312..913685	-	456	121634739	-	NMC0913	-	hypothetical protein
839	 51.16	0	913923..914483	+	186	121634740	efp	NMC0915	-	elongation factor P
840	 53.07	0	914533..915378	-	281	121634741	-	NMC0916	-	putative lipoprotein
841	 53.30	0	915495..916085	-	196	121634742	-	NMC0917	-	hypothetical protein
842	 52.76	0	916073..917194	-	373	121634743	metX	NMC0918	-	homoserine O-acetyltransferase
843	 53.17	0	917661..917786	-	41	121634744	rpmJ	NMC0919	-	50S ribosomal protein L36
844	 47.10	0	917786..918061	-	91	121634745	rpmE2	NMC0920	-	50S ribosomal protein L31 type B
845	 52.45	0	918261..919139	+	292	121634746	metF	NMC0921	-	5,10-methylenetetrahydrofolate reductase
846	 52.13	0	919277..921553	+	758	121634747	metE	NMC0922	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
847	 47.97	0	921832..922569	+	245	121634748	-	NMC0923	-	putative redoxin
848	 54.49	0	922818..924221	+	467	121634749	lpdA2	NMC0924	-	dihydrolipoamide dehydrogenase
849	 48.94	0	924500..924877	+	125	121634750	sdhC	NMC0925	-	putative succinate dehydrogenase cytochrome B subunit
850	 46.48	0	924886..925212	+	108	121634751	sdhD	NMC0926	-	putative succinate dehydrogenase hydrophobic membrane anchor protein
851	 52.14	0	925203..926978	+	591	121634752	sdhA	NMC0927	-	putative succinate dehydrogenase flavoprotein subunit
852	 47.54	0	927075..927806	+	243	121634753	sdhB	NMC0928	-	succinate dehydrogenase iron-sulfur subunit
853	 42.17	-1	927810..928058	+	82	121634754	-	NMC0929	-	hypothetical protein
854	 52.73	0	928170..929453	+	427	121634755	gltA	NMC0930	-	type II citrate synthase
855	 50.94	0	929658..932486	+	942	121634756	kgd	NMC0931	-	alpha-ketoglutarate decarboxylase
856	 53.14	0	932586..933827	+	413	121634757	sucB	NMC0932	-	dihydrolipoamide acetyltransferase
857	 52.86	0	934192..935625	+	477	121634758	lpdA3	NMC0933	-	dihydrolipoamide dehydrogenase
858	 46.53	0	935750..936037	+	95	121634759	-	NMC0934	-	hypothetical protein
859	 52.19	0	936137..937303	+	388	121634760	sucC	NMC0935	-	succinyl-CoA synthetase subunit beta
860	 51.07	0	937314..938204	+	296	121634761	sucD	NMC0936	-	succinyl-CoA synthetase subunit alpha
861	 49.09	0	938439..938768	-	109	121634762	-	NMC0938	-	hypothetical protein
862	 28.42	-2	939748..941802	-	684	121634763	-	NMC0940	-	putative ATP-dependent helicase
863	 57.29	0	941817..944663	-	948	121634764	uvrA	NMC0941	-	excinuclease ABC subunit A
864	 53.13	0	944818..945615	+	265	121634765	-	NMC0942	-	phosphatidylserine decarboxylase
865	 55.42	0	947278..949572	-	764	121634766	-	NMC0944	-	putative outer-membrane receptor protein
866	 51.95	0	949976..950566	+	196	121634767	trpG	NMC0947	-	anthranilate synthase component II
867	 52.69	0	950631..951689	+	352	121634768	trpD	NMC0948	-	anthranilate phosphoribosyltransferase
868	 36.78	-2	951841..952014	-	57	121634769	-	NMC0949	-	putative transposase
869	 46.57	0	952467..953501	+	344	121634770	-	NMC0950	-	putative phage replication initiation protein
870	 46.96	0	953492..953836	+	114	121634771	-	NMC0951	-	hypothetical protein
871	 42.42	-1	953841..954038	+	65	121634772	-	NMC0952	-	hypothetical protein
872	 47.37	0	954046..954330	+	94	121634773	-	NMC0953	-	putative integral membrane protein
873	 45.16	0	954337..954615	+	92	121634774	-	NMC0954	-	putative integral membrane protein
874	 29.86	-2	954773..955060	+	95	121634775	-	NMC0955	-	hypothetical protein
875	 42.86	-1	955002..955442	+	146	121634776	-	NMC0956	-	putative cell-surface protein
876	 48.66	0	955953..956513	+	186	121634777	-	NMC0957	-	hypothetical protein
877	 55.19	0	956721..958106	-	461	121634778	pntB	NMC0958	-	pyridine nucleotide transhydrogenase
878	 58.07	0	958172..958555	-	127	121634779	-	NMC0959	-	hypothetical protein
879	 58.17	0	958559..960100	-	513	121634780	pntA	NMC0960	-	NAD(P) transhydrogenase subunit alpha
880	 55.40	0	960393..961226	+	277	121634781	serB	NMC0961	-	phosphoserine phosphatase
881	 59.18	+1	961271..962512	+	413	121634782	-	NMC0962	-	putative integral membrane protein
882	 58.00	0	962677..964257	+	526	121634783	purH	NMC0963	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
883	 53.71	0	964856..965812	+	318	121634784	-	NMC0964	-	putative transposase
884	 51.49	0	965966..966400	+	144	121634785	-	NMC0965	-	putative phage related protein
885	 49.32	0	966372..966809	+	145	121634786	-	NMC0966	-	putative phage related protein
886	 55.49	0	967117..967662	+	181	121634787	-	NMC0967	-	putative amidase
887	 52.90	0	967895..968032	+	45	121634788	-	NMC0969	-	putative phage related protein
888	 54.43	0	968035..968271	+	78	121634789	-	NMC0970	-	putative phage related protein
889	 53.04	0	968252..968662	+	136	121634790	-	NMC0971	-	putative phage related protein
890	 61.01	+1	968706..968864	+	52	121634791	-	NMC0972	-	putative phage related protein
891	 46.20	0	968909..969079	-	56	121634792	-	NMC0973	-	hypothetical protein
892	 42.01	-1	969092..969310	+	72	121634793	-	NMC0974	-	putative phage related protein
893	 51.35	0	969503..970468	-	321	121634794	-	NMC0976	-	putative transposase for IS1655
894	 53.08	0	970767..971774	-	335	121634795	-	NMC0977	-	putative transposase for IS1106
895	 49.04	0	971907..973676	-	589	121634796	-	NMC0978	-	putative surface fibril protein
896	 50.72	0	975798..976004	-	68	121634797	-	NMC0980	-	rubredoxin
897	 58.52	0	976440..977531	-	363	121634798	-	NMC0981	-	putative acyl-CoA dehydrogenase
898	 53.36	0	977666..978349	-	227	121634799	-	NMC0982	-	hypothetical protein
899	 59.14	+1	978369..978740	-	123	121634800	-	NMC0983	-	hypothetical protein
900	 54.79	0	979035..980726	-	563	121634801	dld	NMC0984	-	D-lactate dehydrogenase
901	 55.93	0	981164..985084	+	1306	121634802	-	NMC0985	-	putative oxidoreductase
902	 53.41	0	985137..986162	+	341	121634803	-	NMC0986	-	hypothetical protein
903	 52.78	0	986593..987600	+	335	121634804	-	NMC0988	-	putative transposase for IS1106
904	 59.94	+1	988668..989306	-	212	121634805	-	NMC0992	-	putative phage integrase
905	 52.40	0	989615..990490	-	291	121634806	-	NMC0993	-	hypothetical protein
906	 50.84	0	990535..990831	-	98	121634807	-	NMC0995	-	hypothetical protein
907	 41.27	-1	991130..991507	+	125	121634808	-	NMC0997	-	putative phage repressor
908	 41.46	-1	991536..991781	+	81	121634809	-	NMC0998	-	hypothetical protein
909	 44.09	-1	991867..991959	+	30	121634810	-	NMC0999	-	hypothetical protein
910	 37.94	-1	992071..992982	+	303	121634811	-	NMC1000	-	hypothetical protein
911	 32.51	-2	992979..993461	+	160	121634812	-	NMC1001	-	hypothetical protein
912	 56.75	0	993551..994054	+	167	121634813	-	NMC1002	-	hypothetical protein
913	 50.36	0	994491..994901	+	136	121634814	-	NMC1005	-	hypothetical protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.