IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.80   STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
717	 51.64	0	796063..796581	+	172	121634618	-	NMC0778	-	hypothetical protein
718	 53.28	0	796616..797362	+	248	121634619	-	NMC0779	-	hypothetical protein
719	 57.50	0	797414..799114	+	566	121634620	recJ	NMC0780	-	putative single-stranded-DNA-specific exonuclease
720	 55.68	0	799483..800829	+	448	121634621	pcnB	NMC0781	-	putative poly(A) polymerase
721	 50.46	0	800974..801300	+	108	121634622	-	NMC0782	-	putative periplasmic protein
722	 54.51	0	801404..802357	-	317	121634623	-	NMC0784	-	hypothetical protein
723	 49.79	0	803887..804591	+	234	121634624	-	NMC0788	-	putative periplasmic protein
724	 54.32	0	804655..805221	-	188	121634625	dcd	NMC0789	-	deoxycytidine triphosphate deaminase
725	 50.60	0	805287..805703	-	138	121634626	-	NMC0790	-	putative periplasmic protein
726	 51.67	0	805765..806664	-	299	121634627	rdgC	NMC0791	-	recombination associated protein
727	 53.77	0	806695..808152	-	485	121634628	engA	NMC0792	-	GTP-binding protein EngA
728	 50.48	0	808302..808931	-	209	121634629	-	NMC0793	-	hypothetical protein
729	 51.85	0	808932..810227	-	431	121634630	hisS	NMC0794	-	histidyl-tRNA synthetase
730	 46.10	0	810354..811019	-	221	121634631	-	NMC0795	-	putative periplasmic protein
731	 27.75	-2	811292..811828	-	178	121634632	-	NMC0796	-	hypothetical protein
732	 42.29	-1	811996..812196	-	66	121634633	-	NMC0798	-	hypothetical protein
733	 35.52	-2	812788..813153	-	121	121634634	-	NMC0800	-	hypothetical protein
734	 47.99	0	813135..813680	-	181	121634635	-	NMC0801	-	hypothetical protein
735	 27.95	-2	813843..814139	-	98	121634636	-	NMC0802	-	hypothetical protein
736	 33.33	-2	814381..814671	-	96	121634637	-	NMC0803	-	hypothetical protein
737	 28.51	-2	814991..815239	-	82	121634638	-	NMC0804	-	hypothetical protein
738	 46.34	0	815285..815653	-	122	121634639	-	NMC0805	-	hypothetical protein
739	 51.52	0	815999..816394	-	131	121634640	-	NMC0806	-	putative integral membrane protein
740	 52.99	0	816437..817306	-	289	121634641	-	NMC0807	-	putative periplasmic protein
741	 50.97	0	817471..818394	+	307	121634642	-	NMC0808	-	hypothetical protein
742	 57.17	0	818472..819113	-	213	121634643	-	NMC0809	-	hypothetical protein
743	 54.29	0	819168..819959	-	263	121634644	-	NMC0810	-	spermidine synthase
744	 56.06	0	820452..821243	+	263	121634645	panB	NMC0811	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
745	 54.00	0	821366..822202	+	278	121634646	panC	NMC0812	-	pantoate--beta-alanine ligase
746	 54.78	0	822361..824211	+	616	121634647	-	NMC0813	-	putative periplasmic protein
747	 54.30	0	824294..824932	+	212	121634648	lolB	NMC0814	-	outer membrane lipoprotein LolB
748	 49.53	0	824942..825787	+	281	121634649	-	NMC0815	-	hypothetical protein
749	 52.95	0	826205..827188	+	327	121634650	prsA	NMC0816	-	ribose-phosphate pyrophosphokinase
750	 49.74	0	827255..827827	+	190	121634651	-	NMC0817	-	50S ribosomal protein L25/general stress protein Ctc
751	 48.89	0	827952..829121	-	389	121634652	-	NMC0818	-	putative D-alanyl-D-alanine carboxypeptidase
752	 52.98	0	829269..830795	+	508	121634653	ilvA	NMC0819	-	threonine dehydratase
753	 52.33	0	830852..831925	-	357	121634654	cysA	NMC0820	-	putative sulphate permease ATP-binding protein
754	 56.56	0	831922..832782	-	286	121634655	cysW	NMC0821	-	putative sulphate permease inner membrane protein
755	 59.14	+1	833037..833873	-	278	121634656	cysU	NMC0822	-	putative sulphate permease inner membrane protein
756	 57.06	0	834164..834496	+	110	121634657	-	NMC0823	-	hypothetical protein
757	 38.04	-1	834827..835336	+	169	121634658	-	NMC0824	-	putative integral membrane protein
758	 54.08	0	835908..836495	-	195	121634659	sodB	NMC0825	-	superoxide dismutase
759	 55.79	0	836658..838064	+	468	121634660	dnaB	NMC0826	-	replicative DNA helicase
760	 49.03	0	838328..839047	+	239	121634661	-	NMC0827	-	hypothetical protein
761	 46.93	0	839065..839682	+	205	121634662	-	NMC0828	-	hypothetical protein
762	 44.06	-1	839679..840620	+	313	121634663	-	NMC0829	-	hypothetical protein
763	 46.17	0	840599..841198	+	199	121634664	-	NMC0830	-	hypothetical protein
764	 42.74	-1	841188..841676	+	162	121634665	-	NMC0831	-	putative pilin
765	 49.69	0	843353..843835	-	160	121634666	-	NMC0832	-	hypothetical protein
766	 51.35	0	843948..844430	+	160	121634667	dut	NMC0833	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
767	 51.09	0	844506..845693	+	395	121634668	-	NMC0834	-	hypothetical protein
768	 47.95	0	845955..846734	+	259	121634669	-	NMC0835	-	hypothetical protein
769	 55.89	0	847266..848462	+	398	121634670	-	NMC0836	-	putative Phage integrase
770	 49.87	0	848617..848997	+	126	121634671	-	NMC0837	-	hypothetical protein
771	 58.20	0	849043..849231	+	62	121634672	-	NMC0838	-	hypothetical protein
772	 47.62	0	849556..849912	+	118	121634673	-	NMC0839	-	hypothetical protein
773	 52.94	0	850780..851697	+	305	121634674	-	NMC0840	-	putative phage related protein
774	 54.39	0	851755..852039	-	94	121634675	-	NMC0841	-	putative D-lactate dehydrogenase-related protein
775	 46.88	0	852101..852292	-	63	121634676	-	NMC0842	-	hypothetical protein
776	 50.34	0	852295..852588	-	97	121634677	-	NMC0843	-	hypothetical protein
777	 55.56	0	852585..852845	-	86	121634678	-	NMC0844	-	putative lipoprotein
778	 53.70	0	852881..853096	-	71	121634679	-	NMC0845	-	hypothetical protein
779	 47.02	0	853168..854022	-	284	121634680	-	NMC0846	-	hypothetical protein
780	 47.22	0	854047..854406	-	119	121634681	-	NMC0847	-	hypothetical protein
781	 42.79	-1	854474..854674	-	66	121634682	-	NMC0848	-	hypothetical protein
782	 45.90	0	854905..855429	-	174	121634683	-	NMC0849	-	hypothetical protein
783	 54.25	0	855433..856149	-	238	121634684	-	NMC0850	-	transcriptional regulator
784	 50.86	0	856549..856896	+	115	121634685	-	NMC0852	-	hypothetical protein
785	 48.30	0	857011..859857	+	948	121634686	-	NMC0853	-	hypothetical protein
786	 45.71	0	859874..860083	+	69	121634687	-	NMC0854	-	hypothetical protein
787	 48.32	0	860086..860472	+	128	121634688	-	NMC0855	-	hypothetical protein
788	 53.73	0	860459..860713	+	84	121634689	-	NMC0856	-	hypothetical protein
789	 57.01	0	860722..862284	+	520	121634690	-	NMC0857	-	putative phage related protein
790	 54.88	0	862274..864157	+	627	121634691	-	NMC0858	-	putative phage-related protein
791	 54.39	0	864215..864442	+	75	121634692	-	NMC0859	-	hypothetical protein
792	 51.16	0	864435..864737	+	100	121634693	-	NMC0860	-	hypothetical protein
793	 52.91	0	864760..865137	+	125	121634694	-	NMC0861	-	hypothetical protein
794	 48.75	0	865169..865810	+	213	121634695	-	NMC0862	-	hypothetical protein
795	 49.68	0	865874..866185	+	103	121634696	-	NMC0863	-	hypothetical protein
796	 49.82	0	866233..866505	+	90	121634697	-	NMC0864	-	hypothetical protein
797	 53.18	0	866498..869716	+	1072	121634698	-	NMC0865	-	putative prophage-related protein
798	 50.00	0	869738..870007	+	89	121634699	-	NMC0866	-	putative phage-related protein
799	 56.43	0	870067..870789	+	240	121634700	-	NMC0867	-	putative phage-related protein
800	 55.56	0	870786..871541	+	251	121634701	-	NMC0868	-	putative phage-related protein NLPC_P60
801	 55.74	0	871538..872260	+	240	121634702	-	NMC0869	-	putative phage-related protein
802	 51.83	0	872396..876661	+	1421	121634703	-	NMC0870	-	hypothetical protein
803	 44.97	0	876732..877178	+	148	121634704	-	NMC0871	-	hypothetical protein
804	 48.31	0	877195..877401	+	68	121634705	-	NMC0872	-	putative integral membrane protein
805	 51.82	0	877430..877840	+	136	121634706	-	NMC0873	-	hypothetical protein
806	 55.70	0	878740..879213	+	157	121634707	-	NMC0877	-	putative ATP binding protein
807	 52.55	0	879225..879734	+	169	121634708	-	NMC0878	-	putative integral membrane protein
808	 51.72	0	879787..880134	-	115	121634709	-	NMC0879	-	putative plamid toxin PemK protein
809	 55.70	0	880136..880372	-	78	121634710	-	NMC0880	-	putative transcription regulator
810	 41.47	-1	880731..881381	-	216	121634711	-	NMC0881	-	hypothetical protein
811	 55.83	0	881660..882028	-	122	121634712	-	NMC0882	-	death-on-curing protein, prophage related protein
812	 54.09	0	882025..882183	-	52	121634713	-	NMC0883	-	hypothetical protein
813	 51.88	0	882572..883579	-	335	121634714	-	NMC0884	-	putative transposase for IS1106A3
814	 36.90	-2	884729..885991	-	420	121634715	-	NMC0887	-	HlyD family secretion protein
815	 40.30	-1	885993..888089	-	698	121634716	-	NMC0888	-	putative ABC transporter
816	 44.64	-1	888125..888460	-	111	121634717	-	NMC0889	-	putative integral membrane protein
51.80	MEAN

7.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.