IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
671	 54.85	0	746089..746841	+	250	121634572	hemD	NMC0730	-	uroporphyrinogen-III synthase
672	 54.31	0	746856..748190	+	444	121634573	-	NMC0731	-	hypothetical protein
673	 54.84	0	748187..749404	+	405	121634574	-	NMC0732	-	hypothetical protein
674	 57.46	0	749479..750543	+	354	121634575	hemE	NMC0733	-	uroporphyrinogen decarboxylase
675	 58.85	0	750706..752100	+	464	121634576	radA	NMC0734	-	DNA repair protein RadA
676	 55.21	0	752375..752854	-	159	121634577	-	NMC0735	-	putative periplasmic protein
677	 55.41	0	752986..753429	-	147	121634578	-	NMC0736	-	putative periplasmic protein
678	 57.62	0	753384..756998	-	1204	121634579	recB	NMC0737	-	putative exodeoxyribonuclease V beta chain
679	 57.55	0	757231..758349	-	372	121634580	-	NMC0738	-	hypothetical protein
680	 53.14	0	758424..759251	+	275	121634581	-	NMC0739	-	putative amino acid permease substrate-binding protein
681	 51.74	0	759241..759957	+	238	121634582	-	NMC0741	-	putative amino acid permease integral membrane protein
682	 52.91	0	759967..760722	+	251	121634583	-	NMC0742	-	putative amino acid permease ATP-binding protein
683	 53.43	0	760742..762124	-	460	121634584	pgm	NMC0743	-	phosphoglucomutase
684	 51.37	0	762287..762796	-	169	121634585	ppiB	NMC0744	-	putative peptidyl-prolyl cis-trans isomerase B
685	 56.43	0	762915..764330	-	471	121634586	-	NMC0745	-	putative transmembrane transport protein
686	 58.02	0	764561..764884	-	107	121634587	-	NMC0746	-	hypothetical protein
687	 55.61	0	765187..765765	-	192	121634588	pth	NMC0747	-	peptidyl-tRNA hydrolase
688	 54.84	0	765818..766096	-	92	121634589	-	NMC0748	-	hypothetical protein
689	 50.00	0	766089..766532	-	147	121634590	-	NMC0749	-	hypothetical protein
690	 55.84	0	766741..768708	-	655	121634591	ftsH	NMC0750	-	putative ATP-dependent zinc metallopeptidase
691	 52.82	0	768772..769392	-	206	121634592	ftsJ	NMC0751	-	putative cell division protein
692	 49.84	0	769466..769786	+	106	121634593	-	NMC0752	-	hypothetical protein
693	 55.95	0	769954..770970	+	338	121634594	hemB	NMC0753	-	delta-aminolevulinic acid dehydratase
694	 51.92	0	771033..772259	-	408	121634595	-	NMC0754	-	putative carbon-sulphur lyase
695	 50.94	0	772520..773155	+	211	121634596	-	NMC0755	-	putative GTP cyclohydrolase
696	 52.55	0	773355..774020	+	221	121634597	-	NMC0756	-	putative NAD(P)H-flavin oxidoreductase
697	 56.39	0	774075..774833	-	252	121634598	-	NMC0757	-	putative RNA-binding protein
698	 57.35	0	774858..775748	-	296	121634599	ppnK	NMC0758	-	inorganic polyphosphate/ATP-NAD kinase
699	 60.67	+1	775768..776334	-	188	121634600	-	NMC0759	-	hypothetical protein
700	 60.10	+1	776385..777161	-	258	121634601	-	NMC0760	-	hypothetical protein
701	 54.53	0	777216..777866	-	216	121634602	-	NMC0761	-	TetR family transcriptional regulator
702	 55.04	0	777878..778918	-	346	121634603	murB	NMC0762	-	putative UDP-N-acetylenolpyruvoylglucosamine reductase
703	 56.81	0	779097..780476	-	459	121634604	-	NMC0763	-	multidrug efflux protein
704	 59.11	+1	780811..781962	+	383	121634605	hisZ	NMC0764	-	ATP phosphoribosyltransferase regulatory subunit
705	 56.93	0	782060..783364	+	434	121634606	purA	NMC0765	-	adenylosuccinate synthetase
706	 55.83	0	783751..784590	-	279	121634607	htpX	NMC0766	-	heat shock protein HtpX
707	 54.17	0	784805..785452	+	215	121634608	adk	NMC0767	-	adenylate kinase
708	 54.66	0	785978..786718	+	246	121634609	pyrF	NMC0768	-	orotidine 5'-phosphate decarboxylase
709	 56.58	0	786773..787744	+	323	121634610	rfaE	NMC0769	-	putative DP-heptose synthetase
710	 33.58	-2	787781..789016	+	411	121634611	nmgII	NMC0771	-	putative modification methylase
711	 31.90	-2	789018..790136	+	372	121634612	nmgI	NMC0772	-	putative type II restriction endonuclease
712	 51.44	0	790177..791181	+	334	121634613	rfaD	NMC0773	-	putative ADP-L-glycero-D-mannoheptose epimerase
713	 55.48	0	791245..793560	-	771	121634614	clpA	NMC0774	-	putative ATP-dependent protease ATP-binding protein
714	 51.49	0	793544..793846	-	100	121634615	-	NMC0775	-	hypothetical protein
715	 48.04	0	794089..794292	+	67	121634616	cspA	NMC0776	-	putative transcriptional regulator
716	 60.81	+1	794589..795920	-	443	121634617	-	NMC0777	-	hypothetical protein
717	 51.64	0	796063..796581	+	172	121634618	-	NMC0778	-	hypothetical protein
718	 53.28	0	796616..797362	+	248	121634619	-	NMC0779	-	hypothetical protein
719	 57.50	0	797414..799114	+	566	121634620	recJ	NMC0780	-	putative single-stranded-DNA-specific exonuclease
720	 55.68	0	799483..800829	+	448	121634621	pcnB	NMC0781	-	putative poly(A) polymerase
721	 50.46	0	800974..801300	+	108	121634622	-	NMC0782	-	putative periplasmic protein
722	 54.51	0	801404..802357	-	317	121634623	-	NMC0784	-	hypothetical protein
723	 49.79	0	803887..804591	+	234	121634624	-	NMC0788	-	putative periplasmic protein
724	 54.32	0	804655..805221	-	188	121634625	dcd	NMC0789	-	deoxycytidine triphosphate deaminase
725	 50.60	0	805287..805703	-	138	121634626	-	NMC0790	-	putative periplasmic protein
726	 51.67	0	805765..806664	-	299	121634627	rdgC	NMC0791	-	recombination associated protein
727	 53.77	0	806695..808152	-	485	121634628	engA	NMC0792	-	GTP-binding protein EngA
728	 50.48	0	808302..808931	-	209	121634629	-	NMC0793	-	hypothetical protein
729	 51.85	0	808932..810227	-	431	121634630	hisS	NMC0794	-	histidyl-tRNA synthetase
730	 46.10	0	810354..811019	-	221	121634631	-	NMC0795	-	putative periplasmic protein
731	 27.75	-2	811292..811828	-	178	121634632	-	NMC0796	-	hypothetical protein
732	 42.29	-1	811996..812196	-	66	121634633	-	NMC0798	-	hypothetical protein
733	 35.52	-2	812788..813153	-	121	121634634	-	NMC0800	-	hypothetical protein
734	 47.99	0	813135..813680	-	181	121634635	-	NMC0801	-	hypothetical protein
735	 27.95	-2	813843..814139	-	98	121634636	-	NMC0802	-	hypothetical protein
736	 33.33	-2	814381..814671	-	96	121634637	-	NMC0803	-	hypothetical protein
737	 28.51	-2	814991..815239	-	82	121634638	-	NMC0804	-	hypothetical protein
738	 46.34	0	815285..815653	-	122	121634639	-	NMC0805	-	hypothetical protein
739	 51.52	0	815999..816394	-	131	121634640	-	NMC0806	-	putative integral membrane protein
740	 52.99	0	816437..817306	-	289	121634641	-	NMC0807	-	putative periplasmic protein
741	 50.97	0	817471..818394	+	307	121634642	-	NMC0808	-	hypothetical protein
742	 57.17	0	818472..819113	-	213	121634643	-	NMC0809	-	hypothetical protein
743	 54.29	0	819168..819959	-	263	121634644	-	NMC0810	-	spermidine synthase
744	 56.06	0	820452..821243	+	263	121634645	panB	NMC0811	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
745	 54.00	0	821366..822202	+	278	121634646	panC	NMC0812	-	pantoate--beta-alanine ligase
746	 54.78	0	822361..824211	+	616	121634647	-	NMC0813	-	putative periplasmic protein
747	 54.30	0	824294..824932	+	212	121634648	lolB	NMC0814	-	outer membrane lipoprotein LolB
748	 49.53	0	824942..825787	+	281	121634649	-	NMC0815	-	hypothetical protein
749	 52.95	0	826205..827188	+	327	121634650	prsA	NMC0816	-	ribose-phosphate pyrophosphokinase
750	 49.74	0	827255..827827	+	190	121634651	-	NMC0817	-	50S ribosomal protein L25/general stress protein Ctc
751	 48.89	0	827952..829121	-	389	121634652	-	NMC0818	-	putative D-alanyl-D-alanine carboxypeptidase
752	 52.98	0	829269..830795	+	508	121634653	ilvA	NMC0819	-	threonine dehydratase
753	 52.33	0	830852..831925	-	357	121634654	cysA	NMC0820	-	putative sulphate permease ATP-binding protein
754	 56.56	0	831922..832782	-	286	121634655	cysW	NMC0821	-	putative sulphate permease inner membrane protein
755	 59.14	+1	833037..833873	-	278	121634656	cysU	NMC0822	-	putative sulphate permease inner membrane protein
756	 57.06	0	834164..834496	+	110	121634657	-	NMC0823	-	hypothetical protein
757	 38.04	-1	834827..835336	+	169	121634658	-	NMC0824	-	putative integral membrane protein
758	 54.08	0	835908..836495	-	195	121634659	sodB	NMC0825	-	superoxide dismutase
759	 55.79	0	836658..838064	+	468	121634660	dnaB	NMC0826	-	replicative DNA helicase
760	 49.03	0	838328..839047	+	239	121634661	-	NMC0827	-	hypothetical protein
761	 46.93	0	839065..839682	+	205	121634662	-	NMC0828	-	hypothetical protein
762	 44.06	-1	839679..840620	+	313	121634663	-	NMC0829	-	hypothetical protein
763	 46.17	0	840599..841198	+	199	121634664	-	NMC0830	-	hypothetical protein
764	 42.74	-1	841188..841676	+	162	121634665	-	NMC0831	-	putative pilin
765	 49.69	0	843353..843835	-	160	121634666	-	NMC0832	-	hypothetical protein
766	 51.35	0	843948..844430	+	160	121634667	dut	NMC0833	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
767	 51.09	0	844506..845693	+	395	121634668	-	NMC0834	-	hypothetical protein
768	 47.95	0	845955..846734	+	259	121634669	-	NMC0835	-	hypothetical protein
769	 55.89	0	847266..848462	+	398	121634670	-	NMC0836	-	putative Phage integrase
770	 49.87	0	848617..848997	+	126	121634671	-	NMC0837	-	hypothetical protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.