IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
619	 50.83	0	697069..697428	+	119	121634520	rplT	NMC0675	-	50S ribosomal protein L20
620	 51.06	0	697774..698766	+	330	161723299	pheS	NMC0676	-	phenylalanyl-tRNA synthetase subunit alpha
621	 45.86	0	699090..699536	+	148	121634522	vsr	NMC0678	-	putative NmeDIP very-short-patch-repair endonuclease
622	 41.32	-1	699550..700701	+	383	121634523	nmeDIMP	NMC0679	-	putative modification methylase NmeDI
623	 42.99	-1	700673..701728	+	351	121634524	-	NMC0680	-	putative type II restriction enzyme NmeDIP
624	 55.16	0	701783..704146	+	787	121634525	pheT	NMC0681	-	phenylalanyl-tRNA synthetase subunit beta
625	 48.18	0	704220..704522	+	100	121634526	himA	NMC0682	-	putative integration host factor alpha-subunit
626	 52.58	0	704524..704814	+	96	121634527	-	NMC0683	-	hypothetical protein
627	 52.67	0	705144..705629	+	161	121634528	fxsA	NMC0684	-	FxsA
628	 53.84	0	706341..707642	+	433	121634529	bioA	NMC0685	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
629	 53.09	0	707639..708286	+	215	121634530	bioD	NMC0686	-	dithiobiotin synthetase
630	 55.81	0	708253..708777	+	174	121634531	-	NMC0687	-	hypothetical protein
631	 52.64	0	708807..709697	+	296	121634532	ubiA	NMC0688	-	4-hydroxybenzoate octaprenyltransferase
632	 54.00	0	709882..710331	+	149	121634533	-	NMC0689	-	putative regulatory protein
633	 53.58	0	710335..711297	+	320	121634534	-	NMC0690	-	HPr kinase/phosphorylase
634	 54.15	0	711278..712132	+	284	121634535	-	NMC0691	-	hypothetical protein
635	 55.31	0	712213..713154	+	313	121634536	rbgA	NMC0692	-	ribosomal biogenesis GTPase
636	 56.88	0	713255..713857	+	200	121634537	-	NMC0693	-	hypothetical protein
637	 52.69	0	714041..715714	+	557	121634538	recN	NMC0694	-	putative DNA repair protein
638	 58.70	0	716796..718415	-	539	121634539	-	NMC0695	-	hypothetical protein
639	 49.32	0	718535..718903	+	122	121634540	-	NMC0696	-	hypothetical protein
640	 51.90	0	718946..719683	+	245	121634541	ubiE	NMC0697	-	ubiquinone/menaquinone biosynthesis methyltransferase
641	 49.17	0	719903..720382	+	159	121634542	-	NMC0698	-	hypothetical protein
642	 54.75	0	720507..721001	-	164	121634543	folK	NMC0699	-	putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine- pyrophosphokinase
643	 48.53	0	721011..721385	-	124	121634544	-	NMC0700	-	putative regulator
644	 52.91	0	721439..722005	-	188	121634545	-	NMC0701	-	hypothetical protein
645	 51.02	0	722089..722382	-	97	121634546	hfq	NMC0702	-	putative regulator
646	 52.89	0	722511..723461	-	316	121634547	-	NMC0703	-	putative D-alanyl-D-alanine-endopeptidase
647	 49.80	0	723707..724210	+	167	121634548	-	NMC0704	-	hypothetical protein
648	 55.02	0	724262..725137	+	291	121634549	xerD	NMC0705	-	putative integrase/recombinase
649	 57.71	0	725309..725509	+	66	121634550	-	NMC0706	-	putative ferredoxin
650	 43.59	-1	725675..725908	+	77	121634551	-	NMC0707	-	putative thioredoxin
651	 55.09	0	726383..727246	-	287	121634552	rfbD	NMC0708	-	putative dTDP-4-dehydrorhamnose reductase
652	 46.95	0	727259..728308	+	349	121634553	purC	NMC0709	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
653	 53.60	0	728530..730665	+	711	121634554	pnp	NMC0710	-	polynucleotide phosphorylase/polyadenylase
654	 52.02	0	730737..731405	-	222	121634555	-	NMC0711	-	hypothetical protein
655	 49.53	0	731419..731739	-	106	121634556	-	NMC0712	-	putative lipoprotein
656	 55.63	0	731852..732703	+	283	121634557	dapF	NMC0713	-	diaminopimelate epimerase
657	 52.15	0	732700..733305	+	201	121634558	-	NMC0714	-	putative integral membrane protein
658	 52.89	0	733445..734431	+	328	121634559	cysK	NMC0715	-	cysteine synthase
659	 55.45	0	734868..735848	+	326	121634560	-	NMC0717	-	putative integral membrane protein
660	 50.20	0	736262..737281	-	339	121634561	lepB	NMC0718	-	signal peptidase I
661	 52.17	0	737424..739217	-	597	121634562	lepA	NMC0719	-	GTP-binding protein LepA
662	 53.17	0	739360..740115	-	251	121634563	pfs	NMC0720	-	putative 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
663	 53.73	0	740247..741359	+	370	121634564	pilT2	NMC0721	-	putative pilus retraction protein
664	 50.92	0	741394..742371	+	325	121634565	holB	NMC0722	-	DNA polymerase III subunit delta'
665	 49.00	0	742375..742725	+	116	121634566	-	NMC0723	-	putative pilus biogenesis protein
666	 52.82	0	742730..743509	+	259	121634567	-	NMC0724	-	hypothetical protein
667	 51.92	0	743851..744162	+	103	121634568	-	NMC0726	-	hypothetical protein
668	 55.82	0	744268..744894	+	208	121634569	upp	NMC0727	-	uracil phosphoribosyltransferase
669	 52.02	0	744917..745237	+	106	121634570	-	NMC0728	-	hypothetical protein
670	 49.17	0	745640..746062	+	140	121634571	-	NMC0729	-	putative secreted protein
671	 54.85	0	746089..746841	+	250	121634572	hemD	NMC0730	-	uroporphyrinogen-III synthase
672	 54.31	0	746856..748190	+	444	121634573	-	NMC0731	-	hypothetical protein
673	 54.84	0	748187..749404	+	405	121634574	-	NMC0732	-	hypothetical protein
674	 57.46	0	749479..750543	+	354	121634575	hemE	NMC0733	-	uroporphyrinogen decarboxylase
675	 58.85	0	750706..752100	+	464	121634576	radA	NMC0734	-	DNA repair protein RadA
676	 55.21	0	752375..752854	-	159	121634577	-	NMC0735	-	putative periplasmic protein
677	 55.41	0	752986..753429	-	147	121634578	-	NMC0736	-	putative periplasmic protein
678	 57.62	0	753384..756998	-	1204	121634579	recB	NMC0737	-	putative exodeoxyribonuclease V beta chain
679	 57.55	0	757231..758349	-	372	121634580	-	NMC0738	-	hypothetical protein
680	 53.14	0	758424..759251	+	275	121634581	-	NMC0739	-	putative amino acid permease substrate-binding protein
681	 51.74	0	759241..759957	+	238	121634582	-	NMC0741	-	putative amino acid permease integral membrane protein
682	 52.91	0	759967..760722	+	251	121634583	-	NMC0742	-	putative amino acid permease ATP-binding protein
683	 53.43	0	760742..762124	-	460	121634584	pgm	NMC0743	-	phosphoglucomutase
684	 51.37	0	762287..762796	-	169	121634585	ppiB	NMC0744	-	putative peptidyl-prolyl cis-trans isomerase B
685	 56.43	0	762915..764330	-	471	121634586	-	NMC0745	-	putative transmembrane transport protein
686	 58.02	0	764561..764884	-	107	121634587	-	NMC0746	-	hypothetical protein
687	 55.61	0	765187..765765	-	192	121634588	pth	NMC0747	-	peptidyl-tRNA hydrolase
688	 54.84	0	765818..766096	-	92	121634589	-	NMC0748	-	hypothetical protein
689	 50.00	0	766089..766532	-	147	121634590	-	NMC0749	-	hypothetical protein
690	 55.84	0	766741..768708	-	655	121634591	ftsH	NMC0750	-	putative ATP-dependent zinc metallopeptidase
691	 52.82	0	768772..769392	-	206	121634592	ftsJ	NMC0751	-	putative cell division protein
692	 49.84	0	769466..769786	+	106	121634593	-	NMC0752	-	hypothetical protein
693	 55.95	0	769954..770970	+	338	121634594	hemB	NMC0753	-	delta-aminolevulinic acid dehydratase
694	 51.92	0	771033..772259	-	408	121634595	-	NMC0754	-	putative carbon-sulphur lyase
695	 50.94	0	772520..773155	+	211	121634596	-	NMC0755	-	putative GTP cyclohydrolase
696	 52.55	0	773355..774020	+	221	121634597	-	NMC0756	-	putative NAD(P)H-flavin oxidoreductase
697	 56.39	0	774075..774833	-	252	121634598	-	NMC0757	-	putative RNA-binding protein
698	 57.35	0	774858..775748	-	296	121634599	ppnK	NMC0758	-	inorganic polyphosphate/ATP-NAD kinase
699	 60.67	+1	775768..776334	-	188	121634600	-	NMC0759	-	hypothetical protein
700	 60.10	+1	776385..777161	-	258	121634601	-	NMC0760	-	hypothetical protein
701	 54.53	0	777216..777866	-	216	121634602	-	NMC0761	-	TetR family transcriptional regulator
702	 55.04	0	777878..778918	-	346	121634603	murB	NMC0762	-	putative UDP-N-acetylenolpyruvoylglucosamine reductase
703	 56.81	0	779097..780476	-	459	121634604	-	NMC0763	-	multidrug efflux protein
704	 59.11	+1	780811..781962	+	383	121634605	hisZ	NMC0764	-	ATP phosphoribosyltransferase regulatory subunit
705	 56.93	0	782060..783364	+	434	121634606	purA	NMC0765	-	adenylosuccinate synthetase
706	 55.83	0	783751..784590	-	279	121634607	htpX	NMC0766	-	heat shock protein HtpX
707	 54.17	0	784805..785452	+	215	121634608	adk	NMC0767	-	adenylate kinase
708	 54.66	0	785978..786718	+	246	121634609	pyrF	NMC0768	-	orotidine 5'-phosphate decarboxylase
709	 56.58	0	786773..787744	+	323	121634610	rfaE	NMC0769	-	putative DP-heptose synthetase
710	 33.58	-2	787781..789016	+	411	121634611	nmgII	NMC0771	-	putative modification methylase
711	 31.90	-2	789018..790136	+	372	121634612	nmgI	NMC0772	-	putative type II restriction endonuclease
712	 51.44	0	790177..791181	+	334	121634613	rfaD	NMC0773	-	putative ADP-L-glycero-D-mannoheptose epimerase
713	 55.48	0	791245..793560	-	771	121634614	clpA	NMC0774	-	putative ATP-dependent protease ATP-binding protein
714	 51.49	0	793544..793846	-	100	121634615	-	NMC0775	-	hypothetical protein
715	 48.04	0	794089..794292	+	67	121634616	cspA	NMC0776	-	putative transcriptional regulator
716	 60.81	+1	794589..795920	-	443	121634617	-	NMC0777	-	hypothetical protein
717	 51.64	0	796063..796581	+	172	121634618	-	NMC0778	-	hypothetical protein
718	 53.28	0	796616..797362	+	248	121634619	-	NMC0779	-	hypothetical protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.