IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
566	 54.25	0	644076..645356	+	426	121634467	maeA	NMC0620	-	putative malate oxidoreductase
567	 56.52	0	645903..646937	+	344	121634468	lpxK	NMC0621	-	tetraacyldisaccharide 4'-kinase
568	 48.30	0	647137..647724	+	195	121634469	-	NMC0622	-	putative periplasmic protein
569	 49.73	0	647793..647975	+	60	121634470	-	NMC0623	-	hypothetical protein
570	 59.45	+1	647972..648733	+	253	121634471	kdsB	NMC0624	-	3-deoxy-manno-octulosonate cytidylyltransferase
571	 50.25	0	648756..649157	+	133	121634472	-	NMC0625	-	hypothetical protein
572	 52.53	0	649178..649375	+	65	121634473	-	NMC0626	-	hypothetical protein
573	 34.19	-2	649353..649469	+	38	121634474	-	NMC0627	-	hypothetical protein
574	 53.18	0	650051..650836	+	261	161723301	trpA	NMC0628	-	tryptophan synthase subunit alpha
575	 54.52	0	650873..651745	+	290	161723300	accD	NMC0629	-	acetyl-CoA carboxylase subunit beta
576	 58.49	0	651805..652428	-	207	121634477	cnp1	NMC0630	-	putative periplasmic protein
577	 55.11	0	652525..652749	+	74	121634478	-	NMC0631	-	hypothetical protein
578	 54.13	0	652750..653355	+	201	121634479	-	NMC0632	-	putative lipoprotein
579	 58.36	0	653415..654449	+	344	121634480	pyrC	NMC0633	-	dihydroorotase
580	 57.28	0	654813..655238	-	141	121634481	nusB	NMC0634	-	transcription antitermination protein NusB
581	 55.14	0	655316..655792	-	158	121634482	ribH	NMC0635	-	riboflavin synthase subunit beta
582	 58.33	0	655839..656162	-	107	121634483	-	NMC0636	-	hypothetical protein
583	 54.98	0	656245..657048	+	267	121634484	rnc	NMC0637	-	ribonuclease III
584	 53.25	0	657095..658018	+	307	121634485	era	NMC0638	-	GTP-binding protein Era
585	 60.61	+1	659053..659679	-	208	121634486	trpF	NMC0639	-	N-(5'-phosphoribosyl)anthranilate isomerase
586	 54.47	0	659738..660229	-	163	121634487	greB	NMC0640	-	transcription elongation factor GreB
587	 57.93	0	660329..661873	-	514	121634488	purF	NMC0641	-	amidophosphoribosyltransferase
588	 56.02	0	662185..662682	-	165	121634489	-	NMC0642	-	hypothetical protein
589	 53.15	0	662675..663673	-	332	121634490	tpc	NMC0643	-	putative tetrapac protein
590	 56.24	0	663686..664960	-	424	121634491	folC	NMC0644	-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase
591	 55.56	0	664992..665432	-	146	121634492	folI	NMC0645	-	putative transcriptional regulator
592	 50.93	0	665437..665811	-	124	121634493	-	NMC0646	-	hypothetical protein
593	 52.27	0	665869..666618	-	249	121634494	-	NMC0647	-	putative amino acid permease ATP-binding protein
594	 53.33	0	666770..667549	-	259	121634495	ksgA	NMC0648	-	dimethyladenosine transferase
595	 52.58	0	667740..668456	+	238	121634496	-	NMC0649	-	hypothetical protein
596	 58.35	0	668641..669843	+	400	121634497	trpB	NMC0650	-	tryptophan synthase subunit beta
597	 45.51	0	670022..674728	-	1568	121634498	iga	NMC0651	-	IgA1 protease
598	 60.40	+1	676012..678087	+	691	121634499	comA	NMC0652	-	competence protein
599	 53.61	0	678145..678948	-	267	121634500	comL	NMC0653	-	competence lipoprotein
600	 54.93	0	678947..680071	+	374	121634501	rluD	NMC0654	-	ribosomal large subunit pseudouridine synthase D
601	 53.68	0	680223..681215	-	330	121634502	-	NMC0655	-	putative transmembrane transport protein
602	 60.38	+1	681777..682556	+	259	121634503	-	NMC0656	-	hypothetical protein
603	 57.29	0	682608..683087	+	159	121634504	-	NMC0657	-	putative lipoprotein
604	 58.86	0	683089..684087	+	332	121634505	holA	NMC0658	-	DNA polymerase III subunit delta
605	 53.33	0	684208..684627	+	139	121634506	-	NMC0659	-	hypothetical protein
606	 52.56	0	684652..685218	+	188	121634507	-	NMC0660	-	hypothetical protein
607	 51.19	0	685302..686186	-	294	121634508	-	NMC0661	-	hypothetical protein
608	 55.33	0	686670..687542	-	290	121634509	rpoH	NMC0663	-	RNA polymerase factor sigma-32
609	 55.86	0	687797..689341	-	514	121634510	lnt	NMC0664	-	apolipoprotein N-acyltransferase
610	 56.48	0	689375..690130	-	251	121634511	-	NMC0665	-	hypothetical protein
611	 59.50	+1	690326..690646	+	106	121634512	-	NMC0666	-	putative integral membrane protein
612	 54.64	0	690799..691089	+	96	121634513	-	NMC0667	-	hypothetical protein
613	 54.73	0	691152..691553	-	133	121634514	-	NMC0668	-	putative cytochrome C
614	 56.08	0	691745..692755	-	336	121634515	hemH	NMC0669	-	ferrochelatase
615	 54.48	0	692837..693952	-	371	121634516	tgt	NMC0671	-	queuine tRNA-ribosyltransferase
616	 48.79	0	694227..696173	+	648	121634517	thrS	NMC0672	-	threonyl-tRNA synthetase
617	 47.51	0	696191..696712	+	173	121634518	infC	NMC0673	-	translation initiation factor IF-3
618	 44.44	-1	696859..697056	+	65	121634519	rpmI	NMC0674	-	50S ribosomal protein L35
619	 50.83	0	697069..697428	+	119	121634520	rplT	NMC0675	-	50S ribosomal protein L20
620	 51.06	0	697774..698766	+	330	161723299	pheS	NMC0676	-	phenylalanyl-tRNA synthetase subunit alpha
621	 45.86	0	699090..699536	+	148	121634522	vsr	NMC0678	-	putative NmeDIP very-short-patch-repair endonuclease
622	 41.32	-1	699550..700701	+	383	121634523	nmeDIMP	NMC0679	-	putative modification methylase NmeDI
623	 42.99	-1	700673..701728	+	351	121634524	-	NMC0680	-	putative type II restriction enzyme NmeDIP
624	 55.16	0	701783..704146	+	787	121634525	pheT	NMC0681	-	phenylalanyl-tRNA synthetase subunit beta
625	 48.18	0	704220..704522	+	100	121634526	himA	NMC0682	-	putative integration host factor alpha-subunit
626	 52.58	0	704524..704814	+	96	121634527	-	NMC0683	-	hypothetical protein
627	 52.67	0	705144..705629	+	161	121634528	fxsA	NMC0684	-	FxsA
628	 53.84	0	706341..707642	+	433	121634529	bioA	NMC0685	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
629	 53.09	0	707639..708286	+	215	121634530	bioD	NMC0686	-	dithiobiotin synthetase
630	 55.81	0	708253..708777	+	174	121634531	-	NMC0687	-	hypothetical protein
631	 52.64	0	708807..709697	+	296	121634532	ubiA	NMC0688	-	4-hydroxybenzoate octaprenyltransferase
632	 54.00	0	709882..710331	+	149	121634533	-	NMC0689	-	putative regulatory protein
633	 53.58	0	710335..711297	+	320	121634534	-	NMC0690	-	HPr kinase/phosphorylase
634	 54.15	0	711278..712132	+	284	121634535	-	NMC0691	-	hypothetical protein
635	 55.31	0	712213..713154	+	313	121634536	rbgA	NMC0692	-	ribosomal biogenesis GTPase
636	 56.88	0	713255..713857	+	200	121634537	-	NMC0693	-	hypothetical protein
637	 52.69	0	714041..715714	+	557	121634538	recN	NMC0694	-	putative DNA repair protein
638	 58.70	0	716796..718415	-	539	121634539	-	NMC0695	-	hypothetical protein
639	 49.32	0	718535..718903	+	122	121634540	-	NMC0696	-	hypothetical protein
640	 51.90	0	718946..719683	+	245	121634541	ubiE	NMC0697	-	ubiquinone/menaquinone biosynthesis methyltransferase
641	 49.17	0	719903..720382	+	159	121634542	-	NMC0698	-	hypothetical protein
642	 54.75	0	720507..721001	-	164	121634543	folK	NMC0699	-	putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine- pyrophosphokinase
643	 48.53	0	721011..721385	-	124	121634544	-	NMC0700	-	putative regulator
644	 52.91	0	721439..722005	-	188	121634545	-	NMC0701	-	hypothetical protein
645	 51.02	0	722089..722382	-	97	121634546	hfq	NMC0702	-	putative regulator
646	 52.89	0	722511..723461	-	316	121634547	-	NMC0703	-	putative D-alanyl-D-alanine-endopeptidase
647	 49.80	0	723707..724210	+	167	121634548	-	NMC0704	-	hypothetical protein
648	 55.02	0	724262..725137	+	291	121634549	xerD	NMC0705	-	putative integrase/recombinase
649	 57.71	0	725309..725509	+	66	121634550	-	NMC0706	-	putative ferredoxin
650	 43.59	-1	725675..725908	+	77	121634551	-	NMC0707	-	putative thioredoxin
651	 55.09	0	726383..727246	-	287	121634552	rfbD	NMC0708	-	putative dTDP-4-dehydrorhamnose reductase
652	 46.95	0	727259..728308	+	349	121634553	purC	NMC0709	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
653	 53.60	0	728530..730665	+	711	121634554	pnp	NMC0710	-	polynucleotide phosphorylase/polyadenylase
654	 52.02	0	730737..731405	-	222	121634555	-	NMC0711	-	hypothetical protein
655	 49.53	0	731419..731739	-	106	121634556	-	NMC0712	-	putative lipoprotein
656	 55.63	0	731852..732703	+	283	121634557	dapF	NMC0713	-	diaminopimelate epimerase
657	 52.15	0	732700..733305	+	201	121634558	-	NMC0714	-	putative integral membrane protein
658	 52.89	0	733445..734431	+	328	121634559	cysK	NMC0715	-	cysteine synthase
659	 55.45	0	734868..735848	+	326	121634560	-	NMC0717	-	putative integral membrane protein
660	 50.20	0	736262..737281	-	339	121634561	lepB	NMC0718	-	signal peptidase I
661	 52.17	0	737424..739217	-	597	121634562	lepA	NMC0719	-	GTP-binding protein LepA
662	 53.17	0	739360..740115	-	251	121634563	pfs	NMC0720	-	putative 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
663	 53.73	0	740247..741359	+	370	121634564	pilT2	NMC0721	-	putative pilus retraction protein
664	 50.92	0	741394..742371	+	325	121634565	holB	NMC0722	-	DNA polymerase III subunit delta'
665	 49.00	0	742375..742725	+	116	121634566	-	NMC0723	-	putative pilus biogenesis protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.