IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
489	 56.78	0	569934..570611	-	225	121634390	-	NMC0537	-	putative two-component system regulator
490	 55.81	0	570801..572615	-	604	121634391	-	NMC0539	-	integral membrane protein
491	 51.41	0	572605..572958	-	117	121634392	-	NMC0540	-	hypothetical protein
492	 52.22	0	572967..573575	-	202	121634393	-	NMC0541	-	hypothetical protein
493	 51.75	0	573628..574398	-	256	121634394	tatC	NMC0542	-	putative sec-independent protein translocase component
494	 56.48	0	574412..575098	-	228	121634395	-	NMC0543	-	putative sec-independent protein translocase component
495	 51.54	0	575352..575675	-	107	121634396	-	NMC0545	-	putative nucleotide-binding protein
496	 50.62	0	575747..576070	-	107	121634397	hisE	NMC0546	-	putative phosphoribosyl-ATP cyclohydrolase
497	 55.77	0	576211..577275	-	354	121634398	-	NMC0547	-	putative zinc-binding alcohol dehydrogenase
498	 57.84	0	577638..578747	-	369	121634399	-	NMC0548	-	hypothetical protein
499	 47.19	0	578875..579141	+	88	121634400	-	NMC0549	-	hypothetical protein
500	 53.69	0	579350..581206	+	618	121634401	secD	NMC0550	-	preprotein translocase subunit SecD
501	 49.04	0	581210..582145	+	311	121634402	secF	NMC0551	-	preprotein translocase subunit SecF
502	 54.81	0	582368..582637	+	89	121634403	rpsO	NMC0552	-	30S ribosomal protein S15
503	 50.04	0	583019..584143	+	374	121634404	-	NMC0553	-	putative polyamine permease ATP-binding protein
504	 49.59	0	584159..585124	+	321	121634405	-	NMC0554	-	putative polyamine permease inner membrane protein
505	 50.00	0	585124..586011	+	295	121634406	-	NMC0555	-	putative polyamine permease inner membrane protein
506	 51.08	0	586137..587432	+	431	121634407	-	NMC0556	-	putative oxidoreductase
507	 57.32	0	587677..588981	-	434	121634408	amtB	NMC0557	-	putative ammonium transporter
508	 52.78	0	590199..590594	-	131	121634409	-	NMC0558	-	putative IS1106 transposase
509	 54.76	0	591470..592729	-	419	121634410	rho	NMC0560	-	transcription termination factor Rho
510	 54.93	0	592949..595333	-	794	121634411	ppsA	NMC0561	-	phosphoenolpyruvate synthase
511	 52.92	0	595744..596565	+	273	121634412	-	NMC0562	-	hypothetical protein
512	 60.63	+1	596804..597466	-	220	121634413	-	NMC0563	-	putative phosphatase
513	 56.96	0	597479..598333	-	284	121634414	-	NMC0565	-	hypothetical protein
514	 56.89	0	598734..599357	+	207	121634415	-	NMC0566	-	putative periplasmic carrier protein
515	 54.87	0	599609..600769	+	386	121634416	-	NMC0567	-	putative polyamine permease substrate-binding protein
516	 31.02	-2	600903..602082	+	390	121634417	-	NMC0568	-	putative glycosyl transferase
517	 58.57	0	602123..602653	+	176	121634418	-	NMC0569	-	hypothetical protein
518	 54.26	0	602822..604417	-	531	121634419	prfC	NMC0570	-	peptide chain release factor 3
519	 54.55	0	604524..604919	-	131	121634420	hisI	NMC0571	-	phosphoribosyl-AMP cyclohydrolase
520	 61.20	+1	604950..605717	-	255	121634421	hisF	NMC0572	-	imidazole glycerol phosphate synthase subunit HisF
521	 59.35	+1	605730..606467	-	245	121634422	hisA	NMC0573	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
522	 54.93	0	606500..607138	-	212	121634423	hisH	NMC0574	-	imidazole glycerol phosphate synthase subunit HisH
523	 59.82	+1	607269..608903	-	544	121634424	-	NMC0575	-	putative phosphate acyltransferase
524	 60.53	+1	608956..610014	-	352	121634425	fbpC	NMC0576	-	putative iron-uptake permease ATP-binding protein
525	 51.76	0	610035..611570	-	511	121634426	fbpB	NMC0577	-	putative iron-uptake permease inner membrane protein
526	 55.72	0	611620..612615	-	331	121634427	fbpA	NMC0578	-	major ferric iron binding protein
527	 51.17	0	612866..613336	-	156	121634428	-	NMC0579	-	hypothetical protein
528	 57.59	0	613394..614770	-	458	121634429	argH	NMC0580	-	argininosuccinate lyase
529	 57.47	0	614789..615658	-	289	121634430	galU	NMC0581	-	UTP--glucose-1-phosphate uridylyltransferase
530	 55.83	0	615686..616285	-	199	121634431	-	NMC0582	-	putative deoxyribonucleotide triphosphate pyrophosphatase
531	 55.98	0	616278..616511	-	77	121634432	-	NMC0583	-	hypothetical protein
532	 51.03	0	616619..617200	-	193	121634433	ppa	NMC0584	-	inorganic pyrophosphatase
533	 57.08	0	617253..617711	-	152	121634434	ntpA	NMC0585	-	dATP pyrophosphohydrolase
534	 49.21	0	618156..619982	+	608	121634435	mafB3	NMC0586	-	putative adhesin
535	 28.39	-2	619985..620449	+	154	121634436	-	NMC0587	-	hypothetical protein
536	 43.92	-1	620475..620663	+	62	121634437	-	NMC0588	-	putative lipoprotein
537	 25.69	-2	620832..621119	+	95	121634438	-	NMC0589	-	ribonuclease inhibitor barstar
538	 31.68	-2	622433..622855	+	140	121634439	-	NMC0591	-	hypothetical protein
539	 25.93	-2	623013..623255	+	80	121634440	-	NMC0592	-	hypothetical protein
540	 44.31	-1	623333..623578	+	81	121634441	-	NMC0593	-	hypothetical protein
541	 32.04	-2	623581..623967	+	128	121634442	-	NMC0594	-	hypothetical protein
542	 33.08	-2	624068..624457	+	129	121634443	-	NMC0595	-	hypothetical protein
543	 59.13	+1	624579..625520	+	313	121634444	-	NMC0596	-	adhesin MafA2
544	 52.40	0	625524..626792	+	422	121634445	-	NMC0597	-	adhesin MafB2
545	 33.96	-2	626795..627112	+	105	121634446	-	NMC0598	-	hypothetical protein
546	 44.99	0	627246..627923	+	225	121634447	-	NMC0599	-	hypothetical protein
547	 35.19	-2	627929..628306	+	125	121634448	-	NMC0600	-	hypothetical protein
548	 44.99	0	628437..629105	+	222	121634449	-	NMC0601	-	hypothetical protein
549	 35.90	-2	629109..629381	+	90	121634450	-	NMC0602	-	hypothetical protein
550	 39.87	-1	629363..629515	+	50	121634451	-	NMC0603	-	hypothetical protein
551	 36.63	-2	629502..630047	+	181	121634452	-	NMC0604	-	hypothetical protein
552	 38.30	-1	630041..630664	+	207	121634453	-	NMC0605	-	hypothetical protein
553	 52.78	0	630897..631076	+	59	121634454	-	NMC0606	-	hypothetical protein
554	 25.37	-2	631107..631508	+	133	121634455	-	NMC0607	-	hypothetical protein
555	 30.26	-2	631690..632079	+	129	121634456	-	NMC0608	-	hypothetical protein
556	 59.12	+1	632120..633577	-	485	121634457	-	NMC0609	-	putative transmembrane potassium transporter
557	 56.90	0	633592..634482	-	296	121634458	apaH	NMC0610	-	diadenosine tetraphosphatase
558	 62.56	+1	634500..634889	-	129	121634459	-	NMC0611	-	hypothetical protein
559	 58.48	0	635025..635549	-	174	121634460	nspA	NMC0612	-	outer membrane protein
560	 55.08	0	636136..637335	-	399	121634461	-	NMC0613	-	coproporphyrinogen III oxidase
561	 58.31	0	637368..639893	-	841	121634462	ligA	NMC0614	-	DNA ligase
562	 55.63	0	640041..641327	-	428	121634463	-	NMC0615	-	hypothetical protein
563	 54.80	0	641523..642095	-	190	121634464	ampD	NMC0617	-	N-acetyl-anhydromuranmyl-L-alanine amidase
564	 53.66	0	642122..643174	+	350	121634465	-	NMC0618	-	putative periplasmic protein
565	 55.88	0	643234..643854	+	206	121634466	tdk	NMC0619	-	thymidylate kinase
566	 54.25	0	644076..645356	+	426	121634467	maeA	NMC0620	-	putative malate oxidoreductase
567	 56.52	0	645903..646937	+	344	121634468	lpxK	NMC0621	-	tetraacyldisaccharide 4'-kinase
568	 48.30	0	647137..647724	+	195	121634469	-	NMC0622	-	putative periplasmic protein
569	 49.73	0	647793..647975	+	60	121634470	-	NMC0623	-	hypothetical protein
570	 59.45	+1	647972..648733	+	253	121634471	kdsB	NMC0624	-	3-deoxy-manno-octulosonate cytidylyltransferase
571	 50.25	0	648756..649157	+	133	121634472	-	NMC0625	-	hypothetical protein
572	 52.53	0	649178..649375	+	65	121634473	-	NMC0626	-	hypothetical protein
573	 34.19	-2	649353..649469	+	38	121634474	-	NMC0627	-	hypothetical protein
574	 53.18	0	650051..650836	+	261	161723301	trpA	NMC0628	-	tryptophan synthase subunit alpha
575	 54.52	0	650873..651745	+	290	161723300	accD	NMC0629	-	acetyl-CoA carboxylase subunit beta
576	 58.49	0	651805..652428	-	207	121634477	cnp1	NMC0630	-	putative periplasmic protein
577	 55.11	0	652525..652749	+	74	121634478	-	NMC0631	-	hypothetical protein
578	 54.13	0	652750..653355	+	201	121634479	-	NMC0632	-	putative lipoprotein
579	 58.36	0	653415..654449	+	344	121634480	pyrC	NMC0633	-	dihydroorotase
580	 57.28	0	654813..655238	-	141	121634481	nusB	NMC0634	-	transcription antitermination protein NusB
581	 55.14	0	655316..655792	-	158	121634482	ribH	NMC0635	-	riboflavin synthase subunit beta
582	 58.33	0	655839..656162	-	107	121634483	-	NMC0636	-	hypothetical protein
583	 54.98	0	656245..657048	+	267	121634484	rnc	NMC0637	-	ribonuclease III
584	 53.25	0	657095..658018	+	307	121634485	era	NMC0638	-	GTP-binding protein Era
585	 60.61	+1	659053..659679	-	208	121634486	trpF	NMC0639	-	N-(5'-phosphoribosyl)anthranilate isomerase
586	 54.47	0	659738..660229	-	163	121634487	greB	NMC0640	-	transcription elongation factor GreB
587	 57.93	0	660329..661873	-	514	121634488	purF	NMC0641	-	amidophosphoribosyltransferase
588	 56.02	0	662185..662682	-	165	121634489	-	NMC0642	-	hypothetical protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.