IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
421	 52.96	0	488113..488535	+	140	121634322	-	NMC0466	-	hypothetical protein
422	 55.38	0	488804..489175	+	123	121634323	-	NMC0467	-	hypothetical protein
423	 53.36	0	489172..489810	+	212	121634324	-	NMC0468	-	hypothetical protein
424	 59.12	+1	490450..491535	-	361	121634325	-	NMC0469	-	beta-hexosaminidase
425	 56.15	0	491592..493112	-	506	121634326	-	NMC0470	-	putative integral membrane protein
426	 56.60	0	493312..494811	-	499	121634327	-	NMC0471	-	putative periplasmic serine protease
427	 54.13	0	494949..495578	-	209	121634328	nth	NMC0472	-	endonuclease III
428	 59.91	+1	495624..496052	-	142	121634329	-	NMC0473	-	hypothetical protein
429	 53.10	0	496627..497850	+	407	121634330	-	NMC0474	-	putative transmembrane hexose transporter
430	 54.49	0	498141..499520	+	459	121634331	-	NMC0475	-	putative transmembrane transport protein
431	 53.94	0	499649..500473	-	274	121634332	-	NMC0476	-	hypothetical protein
432	 52.91	0	500475..500990	-	171	121634333	-	NMC0477	-	hypothetical protein
433	 56.09	0	501109..502044	+	311	121634334	hemC	NMC0478	-	porphobilinogen deaminase
434	 52.60	0	502447..503640	-	397	121634335	aspC	NMC0479	-	aromatic amino acid aminotransferase
435	 58.03	0	503722..504219	-	165	121634336	-	NMC0480	-	hypothetical protein
436	 55.88	0	504335..504538	+	67	121634337	-	NMC0481	-	hypothetical protein
437	 54.13	0	504706..506292	-	528	121634338	-	NMC0482	-	putative transmembrane transport protein
438	 55.33	0	506561..507283	-	240	121634339	-	NMC0483	-	UDP-2,3-diacylglucosamine hydrolase
439	 59.12	+1	507533..511018	+	1161	121634340	-	NMC0484	-	hypothetical protein
440	 55.01	0	511369..512415	-	348	121634341	adhA	NMC0486	-	alcohol dehydrogenase
441	 51.28	0	512699..513088	-	129	121634342	-	NMC0487	-	putative pilin
442	 55.30	0	513314..514492	+	392	121634343	-	NMC0488	-	putative periplasmic protein
443	 55.25	0	514558..516492	+	644	121634344	-	NMC0489	-	putative ABC transporter ATP-binding protein
444	 53.62	0	516795..517637	-	280	121634345	-	NMC0490	-	putative thiol:disulphide interchange protein
445	 60.18	+1	517734..519923	+	729	121634346	priA	NMC0491	-	primosome assembly protein PriA
446	 54.27	0	519970..521082	-	370	121634347	-	NMC0493	-	putative integral membrane protein
447	 53.81	0	521091..522047	-	318	121634348	-	NMC0494	-	putative transposase
448	 51.84	0	523485..525413	-	642	121634349	dnaK	NMC0495	-	molecular chaperone DnaK
449	 44.69	-1	525621..525893	-	90	121634350	-	NMC0496	-	hypothetical protein
450	 46.58	0	526079..526765	+	228	121634351	-	NMC0497	-	putative transcriptional regulator
451	 45.13	0	526897..527235	+	112	121634352	-	NMC0498	-	iron-sulfur cluster insertion protein ErpA
452	 49.03	0	527395..527859	+	154	121634353	-	NMC0499	-	hypothetical protein
453	 55.03	0	527894..529405	+	503	121634354	ubiB	NMC0500	-	putative ubiquinone biosynthesis protein UbiB
454	 56.78	0	529762..530580	-	272	121634355	cysE	NMC0501	-	serine acetyltransferase
455	 54.75	0	530764..531342	+	192	121634356	grpE	NMC0502	-	heat shock protein
456	 52.31	0	531466..531681	-	71	121634357	-	NMC0503	-	putative periplasmic protein
457	 52.92	0	531707..532783	-	358	121634358	apbE	NMC0504	-	putative thiamine biosynthesis protein
458	 52.71	0	532914..534131	-	405	121634359	nqrF	NMC0505	-	Na(+)-translocating NADH-quinone reductase subunit F
459	 50.00	0	534145..534738	-	197	121634360	nqrE	NMC0506	-	Na(+)-translocating NADH-quinone reductase subunit E
460	 52.63	0	534742..535368	-	208	121634361	nqrD	NMC0507	-	Na(+)-translocating NADH-quinone reductase subunit D
461	 53.67	0	535368..536144	-	258	121634362	nqrC	NMC0508	-	Na(+)-translocating NADH-quinone reductase subunit C
462	 55.47	0	536137..537369	-	410	121634363	nqrB	NMC0509	-	Na(+)-translocating NADH-quinone reductase subunit B
463	 54.69	0	537372..538715	-	447	121634364	nqrA	NMC0510	-	Na(+)-translocating NADH-quinone reductase subunit A
464	 53.75	0	539063..540502	-	479	121634365	-	NMC0512	-	hypothetical protein
465	 55.28	0	540842..541201	-	119	121634366	-	NMC0513	-	hypothetical protein
466	 50.00	0	541198..541803	-	201	121634367	-	NMC0514	-	hypothetical protein
467	 52.38	0	541850..542332	-	160	121634368	-	NMC0515	-	AsnC family transcriptional regulator
468	 55.19	0	542838..543944	+	368	121634369	gcvT	NMC0516	-	glycine cleavage system aminomethyltransferase T
469	 55.30	0	544107..544493	+	128	121634370	gcvH	NMC0517	-	glycine cleavage system protein H
470	 53.53	0	544645..545892	+	415	121634371	hemA	NMC0518	-	glutamyl-tRNA reductase
471	 50.61	0	546168..546740	+	190	121634372	-	NMC0519	-	putative regulatory protein
472	 53.78	0	546743..547828	+	361	121634373	-	NMC0520	-	hypothetical protein
473	 58.29	0	547886..548506	+	206	121634374	-	NMC0521	-	putative ABC-transporter ATP-binding protein
474	 52.53	0	548723..549217	+	164	121634375	-	NMC0522	-	putative lipoprotein
475	 54.27	0	549351..551012	-	553	121634376	-	NMC0523	-	electron transfer flavoprotein-ubiquinone oxidoreductase
476	 50.64	0	551142..551684	-	180	121634377	-	NMC0524	-	putative peptidase
477	 47.40	0	552629..553282	-	217	121634378	-	NMC0525	-	putative transposase
478	 38.24	-1	553888..554703	+	271	121634379	-	NMC0526	-	putative outer membrane protein
479	 46.45	0	554720..560809	+	2029	121634380	frpC	NMC0527	-	iron-regulated protein FrpC
480	 53.33	0	561089..562003	-	304	121634381	-	NMC0528	-	putative periplasmic binding protein
481	 58.79	0	562080..562955	-	291	121634382	-	NMC0529	-	putative ABC-transporter membrane protein
482	 53.70	0	562979..563734	-	251	121634383	-	NMC0530	-	putative ABC-transporter ATP-binding protein
483	 54.10	0	564026..564391	-	121	121634384	rplS	NMC0531	-	50S ribosomal protein L19
484	 52.67	0	564407..565156	-	249	121634385	trmD	NMC0532	-	tRNA (guanine-N1)-methyltransferase
485	 50.00	0	565156..565665	-	169	121634386	rimM	NMC0533	-	16S rRNA-processing protein
486	 56.10	0	565681..565926	-	81	121634387	rpsP	NMC0534	-	30S ribosomal protein S16
487	 57.85	0	565971..568397	-	808	121634388	-	NMC0535	-	hypothetical protein
488	 53.80	0	568515..569921	-	468	121634389	-	NMC0536	-	putative two-component system sensor kinase
489	 56.78	0	569934..570611	-	225	121634390	-	NMC0537	-	putative two-component system regulator
490	 55.81	0	570801..572615	-	604	121634391	-	NMC0539	-	integral membrane protein
491	 51.41	0	572605..572958	-	117	121634392	-	NMC0540	-	hypothetical protein
492	 52.22	0	572967..573575	-	202	121634393	-	NMC0541	-	hypothetical protein
493	 51.75	0	573628..574398	-	256	121634394	tatC	NMC0542	-	putative sec-independent protein translocase component
494	 56.48	0	574412..575098	-	228	121634395	-	NMC0543	-	putative sec-independent protein translocase component
495	 51.54	0	575352..575675	-	107	121634396	-	NMC0545	-	putative nucleotide-binding protein
496	 50.62	0	575747..576070	-	107	121634397	hisE	NMC0546	-	putative phosphoribosyl-ATP cyclohydrolase
497	 55.77	0	576211..577275	-	354	121634398	-	NMC0547	-	putative zinc-binding alcohol dehydrogenase
498	 57.84	0	577638..578747	-	369	121634399	-	NMC0548	-	hypothetical protein
499	 47.19	0	578875..579141	+	88	121634400	-	NMC0549	-	hypothetical protein
500	 53.69	0	579350..581206	+	618	121634401	secD	NMC0550	-	preprotein translocase subunit SecD
501	 49.04	0	581210..582145	+	311	121634402	secF	NMC0551	-	preprotein translocase subunit SecF
502	 54.81	0	582368..582637	+	89	121634403	rpsO	NMC0552	-	30S ribosomal protein S15
503	 50.04	0	583019..584143	+	374	121634404	-	NMC0553	-	putative polyamine permease ATP-binding protein
504	 49.59	0	584159..585124	+	321	121634405	-	NMC0554	-	putative polyamine permease inner membrane protein
505	 50.00	0	585124..586011	+	295	121634406	-	NMC0555	-	putative polyamine permease inner membrane protein
506	 51.08	0	586137..587432	+	431	121634407	-	NMC0556	-	putative oxidoreductase
507	 57.32	0	587677..588981	-	434	121634408	amtB	NMC0557	-	putative ammonium transporter
508	 52.78	0	590199..590594	-	131	121634409	-	NMC0558	-	putative IS1106 transposase
509	 54.76	0	591470..592729	-	419	121634410	rho	NMC0560	-	transcription termination factor Rho
510	 54.93	0	592949..595333	-	794	121634411	ppsA	NMC0561	-	phosphoenolpyruvate synthase
511	 52.92	0	595744..596565	+	273	121634412	-	NMC0562	-	hypothetical protein
512	 60.63	+1	596804..597466	-	220	121634413	-	NMC0563	-	putative phosphatase
513	 56.96	0	597479..598333	-	284	121634414	-	NMC0565	-	hypothetical protein
514	 56.89	0	598734..599357	+	207	121634415	-	NMC0566	-	putative periplasmic carrier protein
515	 54.87	0	599609..600769	+	386	121634416	-	NMC0567	-	putative polyamine permease substrate-binding protein
516	 31.02	-2	600903..602082	+	390	121634417	-	NMC0568	-	putative glycosyl transferase
517	 58.57	0	602123..602653	+	176	121634418	-	NMC0569	-	hypothetical protein
518	 54.26	0	602822..604417	-	531	121634419	prfC	NMC0570	-	peptide chain release factor 3
519	 54.55	0	604524..604919	-	131	121634420	hisI	NMC0571	-	phosphoribosyl-AMP cyclohydrolase
520	 61.20	+1	604950..605717	-	255	121634421	hisF	NMC0572	-	imidazole glycerol phosphate synthase subunit HisF
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.