IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.80   STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
363	 50.47	0	415333..416911	-	526	121634264	-	NMC0399	-	Pglb2
364	 51.92	0	416904..418076	-	390	121634265	-	NMC0400	-	hypothetical protein
365	 56.64	0	418090..419173	-	360	121634266	-	NMC0401	-	pseudogene (putative glycosyl transferase)
366	 60.85	+1	419170..420597	-	475	121634267	-	NMC0402	-	putative lipopolysaccharide biosynthesis translocase
367	 60.09	+1	420792..421901	-	369	121634268	ribD	NMC0403	-	putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase
368	 62.37	+1	421934..422398	-	154	121634269	-	NMC0404	-	transcriptional regulator NrdR
369	 58.72	0	422427..423269	-	280	121634270	-	NMC0405	-	hypothetical protein
370	 60.00	+1	424559..425638	-	359	121634271	aroB	NMC0406	-	3-dehydroquinate synthase
371	 57.17	0	425718..426233	-	171	121634272	aroK	NMC0407	-	shikimate kinase
372	 52.40	0	427192..428962	-	589	121634273	pilQ	NMC0408	-	pilus secretin
373	 50.00	0	428981..429526	-	181	121634274	pilP	NMC0409	-	pilus assembly protein
374	 50.93	0	429544..430191	-	215	121634275	pilO	NMC0410	-	pilus assembly protein
375	 50.67	0	430192..430791	-	199	121634276	pilN	NMC0411	-	putative pilus assembly protein
376	 47.85	0	430794..431909	-	371	121634277	pilM	NMC0412	-	putative pilus assembly protein
377	 51.52	0	432061..434457	+	798	121634278	ponA	NMC0414	-	penicillin-binding protein 1
378	 49.68	0	434578..435207	-	209	121634279	-	NMC0415	-	GTPase EngB
379	 50.48	0	435413..436036	+	207	121634280	cyc	NMC0416	-	putative cytochrome C
380	 50.20	0	436250..438265	+	671	121634281	-	NMC0417	-	hypothetical protein
381	 51.85	0	438258..439445	+	395	121634282	-	NMC0418	-	hypothetical protein
382	 57.75	0	439561..440625	+	354	121634283	gcp	NMC0419	-	O-sialoglycoprotein endopeptidase
383	 54.74	0	440669..441565	-	298	121634284	-	NMC0421	-	lipid A biosynthesis lauroyl acyltransferase
384	 56.41	0	441911..443080	+	389	121634285	metK	NMC0422	-	S-adenosylmethionine synthetase
385	 39.88	-1	443572..444223	+	216	121634286	-	NMC0423	-	insertion element IS1016 transposase
386	 56.60	0	444299..445708	-	469	121634287	-	NMC0425	-	putative peptidase
387	 50.26	0	445873..446439	+	188	121634288	-	NMC0426	-	putative oxidoreductase
388	 53.00	0	447005..448321	+	438	121634289	-	NMC0427	-	putative transmembrane transport protein
389	 55.78	0	448529..448675	+	48	121634290	-	NMC0428	-	putative two-component system response regulator
390	 56.59	0	448715..449965	+	416	121634291	-	NMC0429	-	putative two-component system sensor kinase
391	 56.69	0	449999..451492	-	497	121634292	-	NMC0430	-	hypothetical protein
392	 56.74	0	451681..451962	+	93	121634293	-	NMC0431	-	putative glutaredoxin
393	 54.73	0	451983..452426	+	147	121634294	secB	NMC0432	-	preprotein translocase subunit SecB
394	 58.10	0	452512..454554	+	680	121634295	recG	NMC0433	-	putative DNA helicase
395	 62.55	+1	455710..456753	-	347	121634296	argC	NMC0434	-	N-acetyl-gamma-glutamyl-phosphate reductase
396	 53.90	0	456750..457031	-	93	121634297	-	NMC0435	-	hypothetical protein
397	 44.20	-1	457285..458440	+	384	121634298	-	NMC0436	-	hypothetical protein
398	 27.50	-2	458437..458676	+	79	121634299	-	NMC0437	-	putative lipoprotein
399	 45.20	0	458669..459022	+	117	121634300	-	NMC0438	-	hypothetical protein
400	 48.52	0	459083..459861	+	258	121634301	-	NMC0439	-	putative secretion protein
401	 45.54	0	460170..460472	+	100	121634302	-	NMC0440	-	hypothetical protein
402	 32.75	-2	460487..460657	+	56	121634303	-	NMC0441	-	hypothetical protein
403	 46.18	0	461056..462798	+	580	121634304	-	NMC0443	-	putative hemolysin activator
404	 48.64	0	462907..468987	+	2026	121634305	-	NMC0444	-	putative hemagglutinin
405	 25.49	-2	468994..469503	+	169	121634306	-	NMC0445	-	hypothetical protein
406	 34.13	-2	471672..472046	+	124	121634307	-	NMC0447	-	hypothetical protein
407	 48.77	0	472359..473861	+	500	121634308	rte5	NMC0448	-	putative hemagglutinin/hemolysin-related protein
408	 31.82	-2	473880..474143	+	87	121634309	-	NMC0449	-	hypothetical protein
409	 46.61	0	474250..476637	+	795	121634310	-	NMC0450	-	putative hemagglutinin/hemolysin-related protein
410	 25.52	-2	476642..477025	+	127	121634311	-	NMC0451	-	hypothetical protein
411	 50.60	0	477275..479776	+	833	121634312	-	NMC0452	-	putative hemagglutinin
412	 30.47	-2	479773..480261	+	162	121634313	-	NMC0453	-	hypothetical protein
413	 32.23	-2	480449..480721	+	90	121634314	-	NMC0454	-	hypothetical protein
414	 42.83	-1	480925..481893	+	322	121634315	-	NMC0456	-	hypothetical protein
415	 45.09	0	481896..482831	+	311	121634316	-	NMC0457	-	hypothetical protein
416	 19.35	-2	483601..483879	+	92	121634317	-	NMC0458	-	hypothetical protein
417	 27.23	-2	484162..484620	+	152	121634318	-	NMC0459	-	putative periplasmic protein
418	 56.97	0	485133..486359	-	408	121634319	rbn	NMC0462	-	fused ribonuclease BN/uncharacterized domain-containing protein
419	 55.91	0	486904..487563	+	219	121634320	-	NMC0464	-	hypothetical protein
420	 57.95	0	487591..488106	+	171	121634321	-	NMC0465	-	hypothetical protein
421	 52.96	0	488113..488535	+	140	121634322	-	NMC0466	-	hypothetical protein
422	 55.38	0	488804..489175	+	123	121634323	-	NMC0467	-	hypothetical protein
423	 53.36	0	489172..489810	+	212	121634324	-	NMC0468	-	hypothetical protein
424	 59.12	+1	490450..491535	-	361	121634325	-	NMC0469	-	beta-hexosaminidase
425	 56.15	0	491592..493112	-	506	121634326	-	NMC0470	-	putative integral membrane protein
426	 56.60	0	493312..494811	-	499	121634327	-	NMC0471	-	putative periplasmic serine protease
427	 54.13	0	494949..495578	-	209	121634328	nth	NMC0472	-	endonuclease III
428	 59.91	+1	495624..496052	-	142	121634329	-	NMC0473	-	hypothetical protein
429	 53.10	0	496627..497850	+	407	121634330	-	NMC0474	-	putative transmembrane hexose transporter
430	 54.49	0	498141..499520	+	459	121634331	-	NMC0475	-	putative transmembrane transport protein
431	 53.94	0	499649..500473	-	274	121634332	-	NMC0476	-	hypothetical protein
432	 52.91	0	500475..500990	-	171	121634333	-	NMC0477	-	hypothetical protein
433	 56.09	0	501109..502044	+	311	121634334	hemC	NMC0478	-	porphobilinogen deaminase
434	 52.60	0	502447..503640	-	397	121634335	aspC	NMC0479	-	aromatic amino acid aminotransferase
435	 58.03	0	503722..504219	-	165	121634336	-	NMC0480	-	hypothetical protein
436	 55.88	0	504335..504538	+	67	121634337	-	NMC0481	-	hypothetical protein
437	 54.13	0	504706..506292	-	528	121634338	-	NMC0482	-	putative transmembrane transport protein
438	 55.33	0	506561..507283	-	240	121634339	-	NMC0483	-	UDP-2,3-diacylglucosamine hydrolase
439	 59.12	+1	507533..511018	+	1161	121634340	-	NMC0484	-	hypothetical protein
440	 55.01	0	511369..512415	-	348	121634341	adhA	NMC0486	-	alcohol dehydrogenase
441	 51.28	0	512699..513088	-	129	121634342	-	NMC0487	-	putative pilin
442	 55.30	0	513314..514492	+	392	121634343	-	NMC0488	-	putative periplasmic protein
443	 55.25	0	514558..516492	+	644	121634344	-	NMC0489	-	putative ABC transporter ATP-binding protein
444	 53.62	0	516795..517637	-	280	121634345	-	NMC0490	-	putative thiol:disulphide interchange protein
445	 60.18	+1	517734..519923	+	729	121634346	priA	NMC0491	-	primosome assembly protein PriA
446	 54.27	0	519970..521082	-	370	121634347	-	NMC0493	-	putative integral membrane protein
447	 53.81	0	521091..522047	-	318	121634348	-	NMC0494	-	putative transposase
448	 51.84	0	523485..525413	-	642	121634349	dnaK	NMC0495	-	molecular chaperone DnaK
449	 44.69	-1	525621..525893	-	90	121634350	-	NMC0496	-	hypothetical protein
450	 46.58	0	526079..526765	+	228	121634351	-	NMC0497	-	putative transcriptional regulator
451	 45.13	0	526897..527235	+	112	121634352	-	NMC0498	-	iron-sulfur cluster insertion protein ErpA
452	 49.03	0	527395..527859	+	154	121634353	-	NMC0499	-	hypothetical protein
453	 55.03	0	527894..529405	+	503	121634354	ubiB	NMC0500	-	putative ubiquinone biosynthesis protein UbiB
454	 56.78	0	529762..530580	-	272	121634355	cysE	NMC0501	-	serine acetyltransferase
455	 54.75	0	530764..531342	+	192	121634356	grpE	NMC0502	-	heat shock protein
456	 52.31	0	531466..531681	-	71	121634357	-	NMC0503	-	putative periplasmic protein
457	 52.92	0	531707..532783	-	358	121634358	apbE	NMC0504	-	putative thiamine biosynthesis protein
458	 52.71	0	532914..534131	-	405	121634359	nqrF	NMC0505	-	Na(+)-translocating NADH-quinone reductase subunit F
459	 50.00	0	534145..534738	-	197	121634360	nqrE	NMC0506	-	Na(+)-translocating NADH-quinone reductase subunit E
460	 52.63	0	534742..535368	-	208	121634361	nqrD	NMC0507	-	Na(+)-translocating NADH-quinone reductase subunit D
461	 53.67	0	535368..536144	-	258	121634362	nqrC	NMC0508	-	Na(+)-translocating NADH-quinone reductase subunit C
462	 55.47	0	536137..537369	-	410	121634363	nqrB	NMC0509	-	Na(+)-translocating NADH-quinone reductase subunit B
51.80	MEAN

7.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.