IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
308	 58.48	0	344654..346669	-	671	121634209	-	NMC0342	-	putative prolyl endopeptidase
309	 62.55	+1	346765..348075	-	436	121634210	argA	NMC0343	-	N-acetylglutamate synthase
310	 57.70	0	348072..348506	-	144	121634211	-	NMC0344	-	hypothetical protein
311	 54.98	0	348580..349221	-	213	121634212	pyrE	NMC0345	-	orotate phosphoribosyltransferase
312	 61.22	+1	349283..350017	-	244	121634213	-	NMC0346	-	hypothetical protein
313	 60.54	+1	350011..350451	-	146	121634214	-	NMC0347	-	putative acetyltransferase
314	 62.68	+1	350448..351125	-	225	121634215	-	NMC0348	-	hypothetical protein
315	 54.40	0	351263..352102	-	279	121634216	-	NMC0349	-	putative lipoprotein
316	 55.96	0	352242..353306	-	354	121634217	fba	NMC0350	-	fructose-1,6-bisphosphate aldolase
317	 61.76	+1	353500..354417	+	305	121634218	xerC	NMC0351	-	putative integrase/recombinase
318	 58.41	0	354502..356415	+	637	121634219	dxs	NMC0352	-	1-deoxy-D-xylulose-5-phosphate synthase
319	 56.06	0	356500..357828	-	442	121634220	-	NMC0353	-	hypothetical protein
320	 58.02	0	358611..359894	+	427	121634221	hemL	NMC0354	-	glutamate-1-semialdehyde aminotransferase
321	 53.37	0	360300..360863	-	187	121634222	orn	NMC0355	-	oligoribonuclease
322	 59.80	+1	360881..361768	-	295	121634223	prmA	NMC0356	-	ribosomal protein L11 methyltransferase
323	 57.12	0	362029..363390	-	453	121634224	accC	NMC0357	-	putative acetyl-CoA carboxylase biotin carboxylase component
324	 57.89	0	363502..363957	-	151	121634225	accB	NMC0358	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
325	 57.22	0	364274..365353	+	359	121634226	queA	NMC0360	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
326	 47.67	0	365724..366302	-	192	121634227	-	NMC0361	-	hypothetical protein
327	 51.67	0	366541..367440	+	299	121634228	-	NMC0362	-	lysR family transcriptional regulator
328	 56.47	0	367667..370882	-	1071	121634229	carB	NMC0363	-	carbamoyl phosphate synthase large subunit
329	 30.60	-2	370889..371437	-	182	121634230	-	NMC0364	-	hypothetical protein
330	 30.32	-2	371440..372003	-	187	121634231	-	NMC0365	-	hypothetical protein
331	 52.56	0	372581..372970	-	129	121634232	-	NMC0366	-	hypothetical protein
332	 50.96	0	372967..373227	-	86	121634233	-	NMC0367	-	hypothetical protein
333	 43.54	-1	373301..373447	-	48	121634234	-	NMC0368	-	putative integral membrane protein
334	 43.48	-1	373550..373687	-	45	121634235	-	NMC0369	-	hypothetical protein
335	 57.41	0	373733..374866	-	377	121634236	carA	NMC0370	-	carbamoyl phosphate synthase small subunit
336	 51.94	0	376847..379963	-	1038	121634237	pilC1	NMC0371	-	pilus-associated protein
337	 58.33	0	380917..381996	-	359	121634238	-	NMC0372	-	hypothetical protein
338	 55.56	0	382354..382875	+	173	121634239	-	NMC0373	-	putative periplasmic thioredoxin
339	 51.25	0	383218..383658	+	146	121634240	-	NMC0374	-	marR family transcriptional regulator
340	 54.29	0	383773..384273	+	166	121634241	-	NMC0375	-	putative NADH:FMN oxidoreductase
341	 60.20	+1	384289..384984	+	231	121634242	-	NMC0376	-	putative sugar-phosphate nucleotidyl transferase
342	 56.71	0	385215..385646	-	143	121634243	-	NMC0377	-	putative integral membrane protein
343	 55.81	0	385821..387497	+	558	121634244	fhs	NMC0378	-	formate--tetrahydrofolate ligase
344	 55.86	0	387611..388702	+	363	121634245	-	NMC0379	-	translation-associated GTPase
345	 52.73	0	389077..390959	+	626	121634246	-	NMC0380	-	putative lipopolysaccharide modification acyltransferase
346	 56.17	0	391022..392317	+	431	121634247	tyrS	NMC0381	-	tyrosyl-tRNA synthetase
347	 56.32	0	392808..393764	+	318	121634248	ribF	NMC0382	-	bifunctional riboflavin kinase/FMN adenylyltransferase
348	 55.20	0	393905..396694	+	929	121634249	ileS	NMC0383	-	isoleucyl-tRNA synthetase
349	 51.20	0	397998..398495	+	165	121634250	lspA	NMC0384	-	lipoprotein signal peptidase
350	 56.97	0	398524..399492	+	322	121634251	ispH	NMC0385	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
351	 61.97	+1	399579..400238	-	219	121634252	-	NMC0386	-	putative phosphatase
352	 56.43	0	400386..402554	+	722	121634253	-	NMC0387	-	putative TonB-dependent receptor
353	 56.91	0	402624..403556	+	310	121634254	-	NMC0388	-	putative esterase
354	 56.83	0	403990..407424	-	1144	121634255	dnaE	NMC0389	-	DNA polymerase III, alpha subunit
355	 50.21	0	407587..407823	+	78	121634256	-	NMC0390	-	hypothetical protein
356	 57.35	0	407801..408004	+	67	121634257	-	NMC0392	-	hypothetical protein
357	 31.09	-2	408109..408510	+	133	121634258	-	NMC0393	-	hypothetical protein
358	 60.10	+1	408820..409656	+	278	121634259	-	NMC0394	-	hypothetical protein
359	 57.85	0	409708..411000	-	430	121634260	avtA	NMC0395	-	valine--pyruvate transaminase
360	 56.83	0	411056..412966	-	636	121634261	pglD	NMC0396	-	pilin glycosylation protein
361	 55.44	0	413014..414189	-	391	121634262	pglC	NMC0397	-	pilin glycosylation protein
362	 50.51	0	414660..415346	-	228	121634263	-	NMC0398	-	putative hydrolase, haloacid dehalogenase-like hydrolase
363	 50.47	0	415333..416911	-	526	121634264	-	NMC0399	-	Pglb2
364	 51.92	0	416904..418076	-	390	121634265	-	NMC0400	-	hypothetical protein
365	 56.64	0	418090..419173	-	360	121634266	-	NMC0401	-	pseudogene (putative glycosyl transferase)
366	 60.85	+1	419170..420597	-	475	121634267	-	NMC0402	-	putative lipopolysaccharide biosynthesis translocase
367	 60.09	+1	420792..421901	-	369	121634268	ribD	NMC0403	-	putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase
368	 62.37	+1	421934..422398	-	154	121634269	-	NMC0404	-	transcriptional regulator NrdR
369	 58.72	0	422427..423269	-	280	121634270	-	NMC0405	-	hypothetical protein
370	 60.00	+1	424559..425638	-	359	121634271	aroB	NMC0406	-	3-dehydroquinate synthase
371	 57.17	0	425718..426233	-	171	121634272	aroK	NMC0407	-	shikimate kinase
372	 52.40	0	427192..428962	-	589	121634273	pilQ	NMC0408	-	pilus secretin
373	 50.00	0	428981..429526	-	181	121634274	pilP	NMC0409	-	pilus assembly protein
374	 50.93	0	429544..430191	-	215	121634275	pilO	NMC0410	-	pilus assembly protein
375	 50.67	0	430192..430791	-	199	121634276	pilN	NMC0411	-	putative pilus assembly protein
376	 47.85	0	430794..431909	-	371	121634277	pilM	NMC0412	-	putative pilus assembly protein
377	 51.52	0	432061..434457	+	798	121634278	ponA	NMC0414	-	penicillin-binding protein 1
378	 49.68	0	434578..435207	-	209	121634279	-	NMC0415	-	GTPase EngB
379	 50.48	0	435413..436036	+	207	121634280	cyc	NMC0416	-	putative cytochrome C
380	 50.20	0	436250..438265	+	671	121634281	-	NMC0417	-	hypothetical protein
381	 51.85	0	438258..439445	+	395	121634282	-	NMC0418	-	hypothetical protein
382	 57.75	0	439561..440625	+	354	121634283	gcp	NMC0419	-	O-sialoglycoprotein endopeptidase
383	 54.74	0	440669..441565	-	298	121634284	-	NMC0421	-	lipid A biosynthesis lauroyl acyltransferase
384	 56.41	0	441911..443080	+	389	121634285	metK	NMC0422	-	S-adenosylmethionine synthetase
385	 39.88	-1	443572..444223	+	216	121634286	-	NMC0423	-	insertion element IS1016 transposase
386	 56.60	0	444299..445708	-	469	121634287	-	NMC0425	-	putative peptidase
387	 50.26	0	445873..446439	+	188	121634288	-	NMC0426	-	putative oxidoreductase
388	 53.00	0	447005..448321	+	438	121634289	-	NMC0427	-	putative transmembrane transport protein
389	 55.78	0	448529..448675	+	48	121634290	-	NMC0428	-	putative two-component system response regulator
390	 56.59	0	448715..449965	+	416	121634291	-	NMC0429	-	putative two-component system sensor kinase
391	 56.69	0	449999..451492	-	497	121634292	-	NMC0430	-	hypothetical protein
392	 56.74	0	451681..451962	+	93	121634293	-	NMC0431	-	putative glutaredoxin
393	 54.73	0	451983..452426	+	147	121634294	secB	NMC0432	-	preprotein translocase subunit SecB
394	 58.10	0	452512..454554	+	680	121634295	recG	NMC0433	-	putative DNA helicase
395	 62.55	+1	455710..456753	-	347	121634296	argC	NMC0434	-	N-acetyl-gamma-glutamyl-phosphate reductase
396	 53.90	0	456750..457031	-	93	121634297	-	NMC0435	-	hypothetical protein
397	 44.20	-1	457285..458440	+	384	121634298	-	NMC0436	-	hypothetical protein
398	 27.50	-2	458437..458676	+	79	121634299	-	NMC0437	-	putative lipoprotein
399	 45.20	0	458669..459022	+	117	121634300	-	NMC0438	-	hypothetical protein
400	 48.52	0	459083..459861	+	258	121634301	-	NMC0439	-	putative secretion protein
401	 45.54	0	460170..460472	+	100	121634302	-	NMC0440	-	hypothetical protein
402	 32.75	-2	460487..460657	+	56	121634303	-	NMC0441	-	hypothetical protein
403	 46.18	0	461056..462798	+	580	121634304	-	NMC0443	-	putative hemolysin activator
404	 48.64	0	462907..468987	+	2026	121634305	-	NMC0444	-	putative hemagglutinin
405	 25.49	-2	468994..469503	+	169	121634306	-	NMC0445	-	hypothetical protein
406	 34.13	-2	471672..472046	+	124	121634307	-	NMC0447	-	hypothetical protein
407	 48.77	0	472359..473861	+	500	121634308	rte5	NMC0448	-	putative hemagglutinin/hemolysin-related protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.