IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
218	 33.56	-2	244201..244638	+	145	121634119	-	NMC0243	-	hypothetical protein
219	 55.31	0	244928..247189	+	753	121634120	nuoG	NMC0244	-	NADH dehydrogenase subunit G
220	 53.00	0	247186..248268	+	360	121634121	nuoH	NMC0245	-	NADH dehydrogenase I chain H
221	 52.29	0	248349..248828	+	159	121634122	nuoI	NMC0246	-	NADH dehydrogenase subunit I
222	 53.27	0	248840..249511	+	223	121634123	nuoJ	NMC0247	-	NADH dehydrogenase I chain J
223	 47.06	0	249508..249813	+	101	121634124	nuoK	NMC0248	-	NADH dehydrogenase subunit K
224	 45.83	0	249847..250422	+	191	121634125	-	NMC0249	-	hypothetical protein
225	 39.77	-1	250546..250887	+	113	121634126	-	NMC0250	-	hypothetical protein
226	 51.41	0	250936..252960	+	674	121634127	nuoL	NMC0251	-	NADH dehydrogenase subunit L
227	 51.37	0	253049..254545	+	498	121634128	nuoM	NMC0252	-	NADH dehydrogenase subunit M
228	 55.33	0	254555..256000	+	481	121634129	nuoN	NMC0253	-	NADH dehydrogenase subunit N
229	 56.70	0	256061..256411	+	116	121634130	-	NMC0254	-	putative inner membrane protei
230	 56.86	0	256520..257416	-	298	121634131	ispA	NMC0255	-	geranyltranstransferase
231	 51.11	0	257400..257624	-	74	121634132	xseB	NMC0256	-	exodeoxyribonuclease small subunit
232	 60.71	+1	257735..258658	-	307	121634133	-	NMC0257	-	ribosome-associated GTPase
233	 59.65	+1	258663..260516	-	617	121634134	-	NMC0258	-	putative ABC transporter
234	 56.92	0	260682..261266	-	194	121634135	ruvA	NMC0259	-	Holliday junction DNA helicase motor protein
235	 57.48	0	261348..261728	-	126	121634136	-	NMC0260	-	hypothetical protein
236	 56.67	0	261728..262447	-	239	121634137	-	NMC0261	-	putative periplasmic protein
237	 59.14	+1	262577..263041	-	154	121634138	-	NMC0262	-	putative tRNA/rRNA methyltransferase
238	 58.26	0	263106..263831	-	241	121634139	-	NMC0263	-	hypothetical protein
239	 60.05	+1	263803..264573	+	256	121634140	-	NMC0264	-	putative hydrolase
240	 56.65	0	264575..265363	+	262	121634141	-	NMC0265	-	hypothetical protein
241	 22.56	-2	265817..266113	+	98	121634142	-	NMC0267	-	hypothetical protein
242	 57.37	0	266719..269019	-	766	121634143	recQ	NMC0269	-	ATP-dependent DNA helicase
243	 57.22	0	269085..269867	-	260	121634144	trpC	NMC0270	-	indole-3-glycerol-phosphate synthase
244	 61.96	+1	269918..270874	-	318	121634145	-	NMC0271	-	hypothetical protein
245	 54.65	0	271007..272545	-	512	121634146	-	NMC0272	-	putative inner membrane protein
246	 55.94	0	273004..273702	+	232	121634147	-	NMC0273	-	putative thiol:disulphide interchange protein
247	 54.83	0	273759..274763	-	334	121634148	-	NMC0274	-	hypothetical protein
248	 59.15	+1	274833..277241	+	802	121634149	-	NMC0275	-	putative outer membrane solvent tolerance protein
249	 57.14	0	277343..278560	+	405	121634150	-	NMC0276	-	putative rotamase
250	 40.45	-1	280407..281615	+	402	121634151	-	NMC0277	-	hypothetical protein
251	 41.03	-1	281636..281947	+	103	121634152	-	NMC0278	-	hypothetical protein
252	 36.32	-2	281951..282151	+	66	121634153	-	NMC0279	-	hypothetical protein
253	 45.89	0	282378..282608	+	76	121634154	-	NMC0280	-	putative periplasmic protein
254	 42.90	-1	282636..282938	+	100	121634155	-	NMC0281	-	putative inner membrane protein
255	 24.82	-2	283053..283334	+	93	121634156	-	NMC0282	-	hypothetical protein
256	 47.37	0	283285..284916	+	543	121634157	tspB	NMC0283	-	TspB protein
257	 44.91	0	285219..285503	+	94	121634158	-	NMC0284	-	putative inner membrane protein
258	 44.70	-1	285504..286691	+	395	121634159	-	NMC0285	-	hypothetical protein
259	 39.29	-1	286906..287862	+	318	121634160	-	NMC0286	-	putative invertase/transposase
260	 55.08	0	288298..290178	-	626	121634161	-	NMC0288	-	hypothetical protein
261	 58.77	0	290487..291119	+	210	121634162	-	NMC0289	-	hypothetical protein
262	 53.61	0	291191..292561	+	456	121634163	purB	NMC0290	-	adenylosuccinate lyase
263	 50.13	0	292641..294509	+	622	121634164	-	NMC0291	-	putative inner membrane trans-acylase protein
264	 58.58	0	295254..297404	-	716	121634165	dinG	NMC0293	-	ATP-dependent DNA helicase DinG
265	 54.98	0	297476..297706	+	76	121634166	-	NMC0294	-	putative inner membrane protein
266	 38.24	-1	298148..300736	+	862	121634167	-	NMC0295	-	putative DNA methylase
267	 51.35	0	301098..302063	+	321	121634168	-	NMC0297	-	insertion element IS1655 transposase
268	 33.33	-2	303055..303426	-	123	121634169	-	NMC0298	-	hypothetical protein
269	 53.03	0	303741..304745	-	334	121634170	-	NMC0299	-	putative transposase for IS1106A3
270	 57.83	0	306449..307195	-	248	121634171	fabG	NMC0302	-	3-ketoacyl-(acyl-carrier-protein) reductase
271	 54.28	0	307257..308822	-	521	121634172	guaA	NMC0303	-	bifunctional GMP synthase/glutamine amidotransferase protein
272	 57.24	0	308922..310979	-	685	121634173	-	NMC0304	-	putative ABC transporter ATP-binding protein
273	 60.19	+1	310925..311851	-	308	121634174	fabD	NMC0305	-	putative malonyl CoA-acyl carrier protein transacylase
274	 53.92	0	311945..312352	-	135	121634175	-	NMC0306	-	putative integral membrane protein
275	 56.70	0	312399..313361	-	320	121634176	fabH	NMC0307	-	3-oxoacyl-(acyl carrier protein) synthase III
276	 34.51	-2	313611..314036	-	141	121634177	-	NMC0308	-	hypothetical protein
277	 39.29	-1	314054..314305	-	83	121634178	-	NMC0309	-	hypothetical protein
278	 57.77	0	314441..315496	-	351	121634179	plsX	NMC0310	-	putative glycerol-3-phosphate acyltransferase PlsX
279	 52.46	0	315584..316111	-	175	121634180	-	NMC0311	-	hypothetical protein
280	 57.78	0	316286..316465	-	59	121634181	rpmF	NMC0312	-	50S ribosomal protein L32
281	 50.79	0	316499..317002	-	167	121634182	-	NMC0313	-	hypothetical protein
282	 55.33	0	317150..317740	+	196	121634183	-	NMC0314	-	Maf-like protein
283	 52.34	0	317787..318512	+	241	121634184	-	NMC0315	-	hypothetical protein
284	 55.19	0	318593..320230	-	545	121634185	-	NMC0316	-	putative inner membrane protein translocase component YidC
285	 58.56	0	320402..320623	-	73	121634186	-	NMC0317	-	hypothetical protein
286	 55.19	0	320688..321053	-	121	121634187	rnpA	NMC0318	-	ribonuclease P
287	 60.00	+1	321056..321190	-	44	121634188	rpmH	NMC0319	-	50S ribosomal protein L34
288	 54.53	0	321483..323039	+	518	121634189	dnaA	NMC0320	-	putative chromosomal replication initiator protein
289	 56.25	0	323119..324222	+	367	121634190	dnaN	NMC0321	-	DNA polymerase III subunit beta
290	 60.07	+1	324485..326635	-	716	121634191	ppk	NMC0323	-	polyphosphate kinase
291	 53.15	0	326711..327154	-	147	121634192	-	NMC0324	-	putative periplasmic protein
292	 53.10	0	327161..327676	-	171	121634193	mlp	NMC0325	-	lipoprotein
293	 56.94	0	327943..330573	+	876	121634194	leuS	NMC0326	-	leucyl-tRNA synthetase
294	 41.08	-1	330811..331623	+	270	121634195	-	NMC0327	-	putative DNA adenine methylase
295	 39.75	-1	331616..332425	+	269	121634196	-	NMC0328	-	putative modification methylase DpnIIB
296	 34.95	-2	332422..332976	+	184	121634197	-	NMC0329	-	hypothetical protein
297	 51.92	0	333746..334057	-	103	121634198	-	NMC0331	-	putative DNA-binding protein
298	 49.12	0	334054..334395	-	113	121634199	-	NMC0332	-	hypothetical protein
299	 51.00	0	335322..335672	-	116	121634200	secG	NMC0333	-	preprotein translocase subunit SecG
300	 56.20	0	335679..336452	-	257	121634201	tpiA	NMC0334	-	triosephosphate isomerase
301	 57.01	0	336612..337139	+	175	121634202	-	NMC0335	-	hypothetical protein
302	 53.12	0	337241..337897	+	218	121634203	-	NMC0336	-	protein-L-isoaspartate O-methyltransferase
303	 54.63	0	337977..338300	+	107	121634204	-	NMC0337	-	hypothetical protein
304	 62.26	+1	338717..340894	-	725	121634205	-	NMC0338	-	putative ferric siderophore receptor protein
305	 59.26	+1	341008..341331	-	107	121634206	-	NMC0339	-	hypothetical protein
306	 60.87	+1	342383..343348	-	321	121634207	fetB2	NMC0340	-	putative ferric enterobactin transporter binding protein
307	 61.96	+1	343584..344540	+	318	121634208	-	NMC0341	-	AraC family transcriptional regulator
308	 58.48	0	344654..346669	-	671	121634209	-	NMC0342	-	putative prolyl endopeptidase
309	 62.55	+1	346765..348075	-	436	121634210	argA	NMC0343	-	N-acetylglutamate synthase
310	 57.70	0	348072..348506	-	144	121634211	-	NMC0344	-	hypothetical protein
311	 54.98	0	348580..349221	-	213	121634212	pyrE	NMC0345	-	orotate phosphoribosyltransferase
312	 61.22	+1	349283..350017	-	244	121634213	-	NMC0346	-	hypothetical protein
313	 60.54	+1	350011..350451	-	146	121634214	-	NMC0347	-	putative acetyltransferase
314	 62.68	+1	350448..351125	-	225	121634215	-	NMC0348	-	hypothetical protein
315	 54.40	0	351263..352102	-	279	121634216	-	NMC0349	-	putative lipoprotein
316	 55.96	0	352242..353306	-	354	121634217	fba	NMC0350	-	fructose-1,6-bisphosphate aldolase
317	 61.76	+1	353500..354417	+	305	121634218	xerC	NMC0351	-	putative integrase/recombinase
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.